Multiscale modeling meets machine learning: What can we learn?

Machine learning biomedicine multiscale modeling physics-based simulation

Journal

Archives of computational methods in engineering : state of the art reviews
ISSN: 1886-1784
Titre abrégé: Arch Comput Methods Eng
Pays: Netherlands
ID NLM: 101728768

Informations de publication

Date de publication:
May 2021
Historique:
entrez: 7 6 2021
pubmed: 8 6 2021
medline: 8 6 2021
Statut: ppublish

Résumé

Machine learning is increasingly recognized as a promising technology in the biological, biomedical, and behavioral sciences. There can be no argument that this technique is incredibly successful in image recognition with immediate applications in diagnostics including electrophysiology, radiology, or pathology, where we have access to massive amounts of annotated data. However, machine learning often performs poorly in prognosis, especially when dealing with sparse data. This is a field where classical physics-based simulation seems to remain irreplaceable. In this review, we identify areas in the biomedical sciences where machine learning and multiscale modeling can mutually benefit from one another: Machine learning can integrate physics-based knowledge in the form of governing equations, boundary conditions, or constraints to manage ill-posted problems and robustly handle sparse and noisy data; multiscale modeling can integrate machine learning to create surrogate models, identify system dynamics and parameters, analyze sensitivities, and quantify uncertainty to bridge the scales and understand the emergence of function. With a view towards applications in the life sciences, we discuss the state of the art of combining machine learning and multiscale modeling, identify applications and opportunities, raise open questions, and address potential challenges and limitations. We anticipate that it will stimulate discussion within the community of computational mechanics and reach out to other disciplines including mathematics, statistics, computer science, artificial intelligence, biomedicine, systems biology, and precision medicine to join forces towards creating robust and efficient models for biological systems.

Identifiants

pubmed: 34093005
doi: 10.1007/s11831-020-09405-5
pmc: PMC8172124
mid: NIHMS1562951
doi:

Types de publication

Journal Article

Langues

eng

Pagination

1017-1037

Subventions

Organisme : NIBIB NIH HHS
ID : R01 EB014877
Pays : United States
Organisme : NCI NIH HHS
ID : R01 CA197491
Pays : United States
Organisme : NHLBI NIH HHS
ID : U01 HL142518
Pays : United States
Organisme : NIBIB NIH HHS
ID : U01 EB022546
Pays : United States
Organisme : NIBIB NIH HHS
ID : U01 EB017695
Pays : United States
Organisme : NHLBI NIH HHS
ID : U01 HL116323
Pays : United States
Organisme : NIAMS NIH HHS
ID : R01 AR074525
Pays : United States
Organisme : NHLBI NIH HHS
ID : U01 HL116330
Pays : United States
Organisme : NHLBI NIH HHS
ID : U01 HL119578
Pays : United States
Organisme : NIBIB NIH HHS
ID : U24 EB028998
Pays : United States

Déclaration de conflit d'intérêts

Conflict of Interest On behalf of all authors, the corresponding author states that there is no conflict of interest.

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Auteurs

Grace C Y Peng (GCY)

National Institutes of Health, Bethesda, Maryland, USA.

Mark Alber (M)

University of California, Riverside, USA.

Adrian Buganza Tepole (AB)

Purdue University, Lafayette, Indiana, USA.

William R Cannon (WR)

Pacific Northwest National Laboratory, Richland, Washington, USA.

Suvranu De (S)

Rensselaer Polytechnic Institute, Troy, New York, USA.

Salvador Dura-Bernal (S)

State University of New York, New York, USA.

Krishna Garikipati (K)

University of Michigan Ann Arbor, Michigan, USA.

George Karniadakis (G)

Brown University, Providence, Rhode Island, USA.

William W Lytton (WW)

State University of New York, New York, USA.

Paris Perdikaris (P)

University of Pennsylvania, Philadelphia, Pennsylvania, USA.

Linda Petzold (L)

University of California, Santa Barbara, California, USA.

Ellen Kuhl (E)

Stanford University, Stanford, California, USA.

Classifications MeSH