Genome Analysis of a Verrucomicrobial Endosymbiont With a Tiny Genome Discovered in an Antarctic Lake.
Antarctic microbiology
Bacterial endosymbionts
extreme genome reduction
genetic code 4
metagenome
Journal
Frontiers in microbiology
ISSN: 1664-302X
Titre abrégé: Front Microbiol
Pays: Switzerland
ID NLM: 101548977
Informations de publication
Date de publication:
2021
2021
Historique:
received:
01
03
2021
accepted:
23
04
2021
entrez:
18
6
2021
pubmed:
19
6
2021
medline:
19
6
2021
Statut:
epublish
Résumé
Organic Lake in Antarctica is a marine-derived, cold (-13∘C), stratified (oxic-anoxic), hypersaline (>200 gl
Identifiants
pubmed: 34140946
doi: 10.3389/fmicb.2021.674758
pmc: PMC8204192
doi:
Types de publication
Journal Article
Langues
eng
Pagination
674758Informations de copyright
Copyright © 2021 Williams, Allen, Ivanova, Huntemann, Haque, Hancock, Brazendale and Cavicchioli.
Déclaration de conflit d'intérêts
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Références
Int J Syst Evol Microbiol. 2007 May;57(Pt 5):959-963
pubmed: 17473241
Environ Microbiol. 2016 Sep;18(8):2548-64
pubmed: 26914459
BMC Microbiol. 2013 Apr 01;13:74
pubmed: 23548081
Mol Biol Evol. 1993 May;10(3):512-26
pubmed: 8336541
Int J Syst Evol Microbiol. 2004 Sep;54(Pt 5):1469-1476
pubmed: 15388697
Proc Natl Acad Sci U S A. 2008 Apr 8;105(14):5555-60
pubmed: 18391199
Proc Natl Acad Sci U S A. 2016 Sep 13;113(37):E5416-24
pubmed: 27573819
Proc Natl Acad Sci U S A. 1996 Apr 2;93(7):2873-8
pubmed: 8610134
Genome Biol Evol. 2012;4(2):136-54
pubmed: 22179582
Biochemistry. 2014 Jan 14;53(1):152-60
pubmed: 24321018
Biochim Biophys Acta. 1991 Jan 22;1056(2):93-125
pubmed: 1671559
Bioinformatics. 2009 Jul 15;25(14):1754-60
pubmed: 19451168
Microbiol Mol Biol Rev. 2004 Dec;68(4):745-70
pubmed: 15590782
Curr Biol. 2011 Aug 23;21(16):1366-72
pubmed: 21835622
PeerJ. 2019 Jul 26;7:e7359
pubmed: 31388474
ISME J. 2010 Feb;4(2):242-52
pubmed: 19907504
Nat Rev Microbiol. 2011 Nov 08;10(1):13-26
pubmed: 22064560
Genome Biol Evol. 2013;5(9):1675-88
pubmed: 23918810
NAR Genom Bioinform. 2020 Jul 03;2(3):lqaa047
pubmed: 33575599
ISME J. 2009 Sep;3(9):1012-35
pubmed: 19404327
BMC Genomics. 2009 Nov 06;10:514
pubmed: 19895685
Appl Environ Microbiol. 2000 Jul;66(7):2898-905
pubmed: 10877784
Nat Commun. 2018 Nov 30;9(1):5114
pubmed: 30504855
mBio. 2019 Jun 18;10(3):
pubmed: 31213566
PLoS Comput Biol. 2012;8(9):e1002687
pubmed: 23028285
Proc Natl Acad Sci U S A. 2012 Jun 26;109(26):10426-31
pubmed: 22699510
PLoS Biol. 2004 Mar;2(3):E69
pubmed: 15024419
Appl Environ Microbiol. 2005 Mar;71(3):1473-9
pubmed: 15746350
Microbiome. 2020 Apr 3;8(1):48
pubmed: 32245390
Arch Microbiol. 2008 Oct;190(4):427-37
pubmed: 18523755
Proc Natl Acad Sci U S A. 2013 Nov 12;110(46):18590-5
pubmed: 24167248
Appl Environ Microbiol. 2012 Mar;78(5):1544-55
pubmed: 22194293
Genome Biol Evol. 2019 May 1;11(5):1398-1416
pubmed: 30980669
Science. 2008 Nov 14;322(5904):1108-9
pubmed: 19008447
Nat Microbiol. 2019 Jul;4(7):1088-1095
pubmed: 31036911
Proc Natl Acad Sci U S A. 2012 Sep 18;109(38):E2561-8
pubmed: 22908292
Proc Natl Acad Sci U S A. 1985 Apr;82(8):2306-9
pubmed: 3887399
Trends Biochem Sci. 2005 Mar;30(3):133-41
pubmed: 15752985
PLoS One. 2014 Jan 15;9(1):e85182
pubmed: 24454815
Front Microbiol. 2019 Nov 08;10:2478
pubmed: 31781051
Proc Biol Sci. 2019 Jul 24;286(1907):20190693
pubmed: 31311477
Genome Biol Evol. 2014 Jul;6(7):1875-93
pubmed: 25115011
J Eukaryot Microbiol. 2019 Mar;66(2):281-293
pubmed: 30028565
ISME J. 2014 May;8(5):1008-19
pubmed: 24335826
BMC Genomics. 2007 Jun 12;8:163
pubmed: 17565672
Genome Biol Evol. 2010;2:708-18
pubmed: 20829280
Nat Microbiol. 2017 Nov;2(11):1533-1542
pubmed: 28894102
Appl Environ Microbiol. 2011 Jul;77(13):4446-54
pubmed: 21571878
PLoS Pathog. 2013;9(9):e1003655
pubmed: 24086138
ISME J. 2017 Mar;11(3):766-776
pubmed: 27801909
Environ Microbiol Rep. 2010 Aug;2(4):554-9
pubmed: 23766225
Nat Genet. 2002 Nov;32(3):402-7
pubmed: 12219091
Nature. 2007 Dec 6;450(7171):879-82
pubmed: 18004300
Environ Microbiol Rep. 2016 Oct;8(5):865-873
pubmed: 27518440
Methods. 2016 Jun 1;102:3-11
pubmed: 27012178
Genome Biol Evol. 2015 Sep 10;7(9):2727-46
pubmed: 26362082
ISME J. 2018 Jan;12(1):124-135
pubmed: 28914880
Int J Syst Evol Microbiol. 2007 Jul;57(Pt 7):1377-1385
pubmed: 17625161
Nat Rev Genet. 2001 Jan;2(1):49-58
pubmed: 11253070
Curr Opin Biotechnol. 2006 Jun;17(3):241-9
pubmed: 16704931
Int J Syst Evol Microbiol. 2008 Nov;58(Pt 11):2491-500
pubmed: 18984682
Microbiome. 2020 Aug 9;8(1):116
pubmed: 32772914
Proc Natl Acad Sci U S A. 2015 Aug 18;112(33):10169-76
pubmed: 25713367
J Biol Chem. 2007 Feb 16;282(7):4427-4436
pubmed: 17166831
Nat Rev Microbiol. 2015 Nov;13(11):691-706
pubmed: 26456925
Biol Rev Camb Philos Soc. 2015 May;90(2):408-27
pubmed: 24838025
Environ Microbiol. 2005 Jul;7(7):916-32
pubmed: 15946289
Proc Natl Acad Sci U S A. 2011 Apr 12;108(15):6163-8
pubmed: 21444812
J Insect Physiol. 1999 Jan;45(1):1-6
pubmed: 12770389
Mol Biol Evol. 2013 Dec;30(12):2725-9
pubmed: 24132122
Philos Trans R Soc Lond B Biol Sci. 2010 Mar 12;365(1541):749-63
pubmed: 20124342
EMBO J. 1999 Jul 15;18(14):3981-9
pubmed: 10406803
Nucleic Acids Res. 2003 Mar 15;31(6):1673-82
pubmed: 12626709
Proc Natl Acad Sci U S A. 1986 Apr;83(8):2434-7
pubmed: 16593686
Annu Rev Microbiol. 2005;59:155-89
pubmed: 16153167
Front Microbiol. 2020 Jan 10;10:2978
pubmed: 31998265
Microbiome. 2018 Jun 20;6(1):113
pubmed: 29925429
Proc Natl Acad Sci U S A. 2000 Feb 15;97(4):1813-7
pubmed: 10660683
Environ Microbiol. 2021 Jan;23(1):36-50
pubmed: 32686279
BMC Genomics. 2018 Jan 19;19(1):63
pubmed: 29351734
Stand Genomic Sci. 2016 Feb 24;11:17
pubmed: 26918089
Proc Natl Acad Sci U S A. 2003 Aug 5;100(16):9388-93
pubmed: 12886019
J Bacteriol. 2006 Jul;188(13):4737-48
pubmed: 16788183
mSystems. 2017 Nov 21;2(6):
pubmed: 29181447
PLoS One. 2016 Nov 9;11(11):e0165442
pubmed: 27828996
Biology (Basel). 2017 Jan 18;6(1):
pubmed: 28106766
Prog Lipid Res. 2013 Jul;52(3):249-76
pubmed: 23500459
Int J Syst Evol Microbiol. 2007 Mar;57(Pt 3):532-537
pubmed: 17329779
Genome Res. 2015 Jul;25(7):1043-55
pubmed: 25977477
Genome Res. 2004 Jul;14(7):1394-403
pubmed: 15231754
Curr Biol. 2016 May 23;26(10):1274-84
pubmed: 27185558
Science. 2006 Oct 13;314(5797):312-3
pubmed: 17038625
Nucleic Acids Res. 1990 Jan 11;18(1):173-80
pubmed: 2308823
Appl Environ Microbiol. 2007 Oct;73(19):6270-6
pubmed: 17675420
J Biol Chem. 2009 Apr 3;284(14):9011-5
pubmed: 19028688
Curr Opin Microbiol. 2010 Feb;13(1):73-8
pubmed: 20044299
Environ Microbiol. 2009 Apr;11(4):1007-15
pubmed: 19170725
Science. 2014 May 23;344(6186):909-13
pubmed: 24855270
J Mol Biol. 2000 Mar 24;297(2):365-80
pubmed: 10715207
Nat Rev Genet. 2008 Mar;9(3):218-29
pubmed: 18268509
Annu Rev Microbiol. 2014;68:195-215
pubmed: 24995872
ISME J. 2018 Mar;12(3):898-908
pubmed: 29362506
Microb Ecol. 2013 Oct;66(3):727-33
pubmed: 23872930
PLoS Genet. 2009 Jul;5(7):e1000565
pubmed: 19609354
Science. 2006 Oct 13;314(5797):267
pubmed: 17038615
Appl Environ Microbiol. 2002 Jun;68(6):3121-5
pubmed: 12039775
FEMS Microbiol Ecol. 2007 Jun;60(3):467-76
pubmed: 17391329
Nucleic Acids Res. 1994 Nov 11;22(22):4673-80
pubmed: 7984417
Int J Syst Evol Microbiol. 2006 Sep;56(Pt 9):2119-2124
pubmed: 16957108
Biol Direct. 2016 Oct 21;11(1):55
pubmed: 27769290
mBio. 2014 Sep 30;5(5):e01697-14
pubmed: 25271287
J Mol Biol. 2007 Nov 30;374(3):837-63
pubmed: 17959197
Nucleic Acids Res. 2004 Mar 19;32(5):1792-7
pubmed: 15034147
Mol Ecol Resour. 2019 Sep;19(5):1292-1308
pubmed: 30985983
Nucleic Acids Res. 2007;35(9):3100-8
pubmed: 17452365
Genome Biol Evol. 2011;3:702-14
pubmed: 21737395
Bioinformatics. 2014 Jul 15;30(14):2068-9
pubmed: 24642063
Sci Rep. 2020 Nov 20;10(1):20311
pubmed: 33219271
Microbiome. 2018 Oct 10;6(1):181
pubmed: 30305166
Environ Microbiol. 2013 Jul;15(7):1988-99
pubmed: 23279075
ISME J. 2013 Oct;7(10):1944-61
pubmed: 23619305