Polyphenol oxidase genes as integral part of the evolutionary history of domesticated tetraploid wheat.

Catechol Oxidase / genetics Domestication Evolution, Molecular Genome-Wide Association Study Haplotypes Polymorphism, Single Nucleotide Tetraploidy Triticum / enzymology
Breeding Haplotype Polyphenol oxidase SNP Triticum turgidum

Journal

Genomics
ISSN: 1089-8646
Titre abrégé: Genomics
Pays: United States
ID NLM: 8800135

Informations de publication

Date de publication:
09 2021
Historique:
received: 29 12 2020
revised: 14 04 2021
accepted: 23 06 2021
pubmed: 29 6 2021
medline: 1 4 2022
entrez: 28 6 2021
Statut: ppublish

Résumé

Studying and understanding the genetic basis of polyphenol oxidases (PPO)-related traits plays a crucial role in genetic improvement of crops. A tetraploid wheat collection (T. turgidum ssp., TWC) was analyzed using the 90K wheat SNP iSelect assay and phenotyped for PPO activity. A total of 21,347 polymorphic SNPs were used to perform genome-wide association analysis (GWA) in TWC and durum wheat sub-groups, detecting 23 and 85 marker-trait associations (MTA). In addition, candidate genes responsible for PPO activity were predicted. Based on the 23 MTAs detected in TWC, two haplotypes associated with low and high PPO activity were identified. Four SNPs were developed and validated providing one reliable marker (IWB75732) for marker assisted selection. The 23 MTAs were used to evaluate the genetic divergence (F

Identifiants

DOI: 10.1016/j.ygeno.2021.06.030 PMID: 34182080
pubmed: 34182080
pii: S0888-7543(21)00247-0
doi: 10.1016/j.ygeno.2021.06.030
pii:
doi:

Substances chimiques

Catechol Oxidase EC 1.10.3.1

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

2989-3001

Commentaires et corrections

Type : ErratumIn

Informations de copyright

Copyright © 2021 Elsevier Inc. All rights reserved.

Auteurs

Francesca Taranto (F)

National Research Council (CNR), Institute of Biosciences and Bioresources (CNR-IBBR), 80055 Portici, NA, Italy. Electronic address: francesca.taranto@ibbr.cnr.it.

Giacomo Mangini (G)

National Research Council (CNR), Institute of Biosciences and Bioresources (CNR-IBBR), 70126 Bari, BA, Italy. Electronic address: giacomo.mangini@ibbr.cnr.it.

Monica Marilena Miazzi (MM)

Department of Soil, Plant and Food Sciences, University of Bari Aldo Moro, 70126 Bari, Italy.

Piergiorgio Stevanato (P)

DAFNAE, Università degli Studi di Padova, 35020 Legnaro, Italy.

Pasquale De Vita (P)

Council for Agricultural Research and Economics (CREA), Research Centre for Cereal and Industrial Crops (CREA-CI), 71122 Foggia, Italy.

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Classifications MeSH

questionsmedicales.fr › Enzymes et coenzymes › Enzymes › Oxidoreductases › Oxygénases › Mixed function oxygenases › Catechol oxidase › Polyphenol oxidase genes as integral part of...
questionsmedicales.fr › Technologie, industrie et agriculture › Agriculture › Domestication › Polyphenol oxidase genes as integral part of...
questionsmedicales.fr › Phénomènes biologiques › Évolution biologique › Évolution moléculaire › Polyphenol oxidase genes as integral part of...
questionsmedicales.fr › Environnement et santé publique › Santé publique › Méthodes épidémiologiques › Épidémiologie moléculaire › Étude d'association pangénomique › Polyphenol oxidase genes as integral part of...
questionsmedicales.fr › Phénomènes génétiques › Génotype › Haplotypes › Polyphenol oxidase genes as integral part of...
questionsmedicales.fr › Phénomènes génétiques › Variation génétique › Polymorphisme génétique › Polymorphisme de nucléotide simple › Polyphenol oxidase genes as integral part of...
questionsmedicales.fr › Phénomènes génétiques › Ploïdies › Polyploïdie › Tétraploïdie › Polyphenol oxidase genes as integral part of...
questionsmedicales.fr › Eucaryotes › Viridiplantae › Streptophyta › Embryophyta › Tracheobionta › Magnoliopsida › Poaceae › Triticum › Polyphenol oxidase genes as integral part of...