Gene-rich UV sex chromosomes harbor conserved regulators of sexual development.
Journal
Science advances
ISSN: 2375-2548
Titre abrégé: Sci Adv
Pays: United States
ID NLM: 101653440
Informations de publication
Date de publication:
06 2021
06 2021
Historique:
received:
24
02
2021
accepted:
14
05
2021
entrez:
1
7
2021
pubmed:
2
7
2021
medline:
9
4
2022
Statut:
epublish
Résumé
Nonrecombining sex chromosomes, like the mammalian Y, often lose genes and accumulate transposable elements, a process termed degeneration. The correlation between suppressed recombination and degeneration is clear in animal XY systems, but the absence of recombination is confounded with other asymmetries between the X and Y. In contrast, UV sex chromosomes, like those found in bryophytes, experience symmetrical population genetic conditions. Here, we generate nearly gapless female and male chromosome-scale reference genomes of the moss
Identifiants
pubmed: 34193417
pii: 7/27/eabh2488
doi: 10.1126/sciadv.abh2488
pmc: PMC8245031
pii:
doi:
Substances chimiques
DNA Transposable Elements
0
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Research Support, U.S. Gov't, Non-P.H.S.
Langues
eng
Sous-ensembles de citation
IM
Informations de copyright
Copyright © 2021 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution NonCommercial License 4.0 (CC BY-NC).
Références
Nature. 2019 Oct;574(7780):679-685
pubmed: 31645766
Philos Trans R Soc Lond B Biol Sci. 2000 Nov 29;355(1403):1563-72
pubmed: 11127901
Nat Commun. 2014 Oct 27;5:5134
pubmed: 25346115
Nat Biotechnol. 2015 Mar;33(3):290-5
pubmed: 25690850
BMC Bioinformatics. 2008 Dec 29;9:559
pubmed: 19114008
BMC Bioinformatics. 2009 Dec 15;10:421
pubmed: 20003500
Nat Plants. 2018 Jan;4(1):36-45
pubmed: 29296005
Nat Commun. 2018 Dec 6;9(1):5213
pubmed: 30523281
Mol Biol Evol. 1994 Sep;11(5):725-36
pubmed: 7968486
Bioinformatics. 2012 Dec 1;28(23):3150-2
pubmed: 23060610
Am J Bot. 2014 Oct;101(10):1588-96
pubmed: 25326608
PLoS One. 2011 Jan 31;6(1):e16526
pubmed: 21304975
Nat Biotechnol. 2020 Oct;38(10):1203-1210
pubmed: 33020633
J Plant Physiol. 2011 Nov 1;168(16):2001-5
pubmed: 21696844
Nature. 2007 Sep 27;449(7161):463-7
pubmed: 17721507
Evolution. 2013 Oct;67(10):2811-22
pubmed: 24094335
Bioinformatics. 2006 Jul 1;22(13):1658-9
pubmed: 16731699
Am J Bot. 2014 Sep;101(9):1572-6
pubmed: 25253715
Genome Biol Evol. 2017 Dec 1;9(12):3384-3397
pubmed: 29216360
Nat Rev Genet. 2013 Feb;14(2):113-24
pubmed: 23329112
Mol Phylogenet Evol. 2016 May;98:29-40
pubmed: 26811877
Evolution. 2013 Feb;67(2):567-72
pubmed: 23356627
Biol Sex Differ. 2020 Jul 21;11(1):42
pubmed: 32693839
BMC Bioinformatics. 2019 Sep 14;20(1):473
pubmed: 31521110
J Cell Biol. 1999 Feb 8;144(3):473-81
pubmed: 9971742
Nat Plants. 2018 Jul;4(7):460-472
pubmed: 29967517
Bioinformatics. 2017 Oct 1;33(19):3088-3090
pubmed: 28575171
Mol Biol Evol. 2013 Apr;30(4):772-80
pubmed: 23329690
PLoS One. 2014 May 02;9(5):e91929
pubmed: 24786468
Nat Biotechnol. 2011 May 15;29(7):644-52
pubmed: 21572440
Cell Syst. 2016 Jul;3(1):95-8
pubmed: 27467249
Nature. 2010 Jan 14;463(7278):178-83
pubmed: 20075913
Genome Res. 2010 Sep;20(9):1297-303
pubmed: 20644199
BMC Evol Biol. 2007 Aug 02;7:130
pubmed: 17683536
Cytogenet Genome Res. 2005;110(1-4):462-7
pubmed: 16093699
Bioinformatics. 2014 Aug 1;30(15):2114-20
pubmed: 24695404
Genome Biol. 2014;15(12):550
pubmed: 25516281
BMC Bioinformatics. 2005 Feb 15;6:31
pubmed: 15713233
Bioinformatics. 2014 May 1;30(9):1312-3
pubmed: 24451623
Genome Res. 1998 Mar;8(3):195-202
pubmed: 9521923
Genome Biol Evol. 2018 Nov 1;10(11):2882-2898
pubmed: 30239709
Genetics. 2018 Sep;210(1):3-13
pubmed: 30166445
Mol Biol Evol. 2016 Jun;33(6):1635-8
pubmed: 26921390
Curr Biol. 2020 Feb 24;30(4):573-588.e7
pubmed: 32004456
Plant J. 2018 Feb;93(3):515-533
pubmed: 29237241
Science. 2007 Oct 12;318(5848):245-50
pubmed: 17932292
Nucleic Acids Res. 1994 Jul 11;22(13):2437-46
pubmed: 8041603
Evolution. 2015 Mar;69(3):694-708
pubmed: 25582562
Nature. 2014 Apr 24;508(7497):494-9
pubmed: 24759411
Mol Biol Evol. 2007 Aug;24(8):1586-91
pubmed: 17483113
Methods Mol Biol. 2003;236:3-20
pubmed: 14501055
J Evol Biol. 2008 May;21(3):727-36
pubmed: 18373660
New Phytol. 2017 Mar;213(4):1909-1924
pubmed: 27870062
Nucleic Acids Res. 1999 Jan 15;27(2):573-80
pubmed: 9862982
Mol Ecol Resour. 2015 Jan;15(1):203-15
pubmed: 24862584
Plant Cell. 2005 Jul;17(7):1941-52
pubmed: 15965119
Cell. 2017 Oct 5;171(2):287-304.e15
pubmed: 28985561
Bioinformatics. 2015 Oct 1;31(19):3210-2
pubmed: 26059717
Bioinformatics. 2019 Jun 1;35(12):2153-2155
pubmed: 30398564
Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W609-12
pubmed: 16845082
PLoS Comput Biol. 2005 Jul;1(2):166-75
pubmed: 16110336
Genome Res. 2000 Apr;10(4):516-22
pubmed: 10779491
Nucleic Acids Res. 2003 Oct 1;31(19):5654-66
pubmed: 14500829
Genetics. 2008 Jul;179(3):1425-35
pubmed: 18562651
Mol Cell Biol. 2002 May;22(9):3078-88
pubmed: 11940665
Science. 1999 Oct 29;286(5441):964-7
pubmed: 10542153
Bioinformatics. 2010 Apr 1;26(7):976-8
pubmed: 20179076
BMC Evol Biol. 2017 Dec 6;17(1):242
pubmed: 29207942
Genomics Proteomics Bioinformatics. 2006 Nov;4(4):259-63
pubmed: 17531802
Nat Methods. 2017 Nov;14(11):1072-1074
pubmed: 28945707
Curr Biol. 2016 Jul 11;26(13):1782-1789
pubmed: 27345166
Gene. 1990 Mar 1;87(1):23-9
pubmed: 2110097
Mol Biol Evol. 2018 Dec 1;35(12):3041-3043
pubmed: 30351396
Genome Res. 1998 Mar;8(3):186-94
pubmed: 9521922
Proc Natl Acad Sci U S A. 2011 May 10;108(19):7884-9
pubmed: 21518873
Biochem Biophys Res Commun. 2016 Dec 9;481(3-4):239-244
pubmed: 27815071
Genome Biol Evol. 2010 Jul 19;2:488-503
pubmed: 20644220
Bioinformatics. 2010 Apr 1;26(7):873-81
pubmed: 20147302
Genetics. 2007 Aug;176(4):2489-500
pubmed: 17603096
Science. 2011 May 20;332(6032):960-3
pubmed: 21551031
Mol Ecol. 2005 Apr;14(4):1121-32
pubmed: 15773940
Nucleic Acids Res. 2012 Jan;40(2):e11
pubmed: 22102584
Genome Biol. 2019 Nov 14;20(1):238
pubmed: 31727128
Planta. 2016 Jul;244(1):275-84
pubmed: 27100110
New Phytol. 2015 Apr;206(1):352-367
pubmed: 25530158
Trends Genet. 2011 Sep;27(9):350-7
pubmed: 21962970
Bioinformatics. 2010 Jul 1;26(13):1669-70
pubmed: 20472542
Genome Res. 2002 Apr;12(4):656-64
pubmed: 11932250
Curr Biol. 2011 Sep 13;21(17):1475-9
pubmed: 21889890
Plant J. 2018 Jul;95(1):168-182
pubmed: 29681058
Bioinformatics. 2009 Aug 1;25(15):1972-3
pubmed: 19505945
Nucleic Acids Res. 2002 Apr 1;30(7):1575-84
pubmed: 11917018
Nat Methods. 2015 Apr;12(4):357-60
pubmed: 25751142
Curr Biol. 2014 Sep 8;24(17):1945-57
pubmed: 25176635
Methods Mol Biol. 2016;1418:283-334
pubmed: 27008021
Bioinformatics. 2007 Apr 15;23(8):1026-8
pubmed: 17309896
Nucleic Acids Res. 2012 Jan;40(Database issue):D1202-10
pubmed: 22140109
Nucleic Acids Res. 2000 Jan 1;28(1):27-30
pubmed: 10592173
Nat Methods. 2013 Jun;10(6):563-9
pubmed: 23644548
Trends Ecol Evol. 2009 Feb;24(2):94-102
pubmed: 19100654
Science. 2010 Apr 16;328(5976):351-4
pubmed: 20395508
Mol Biol Evol. 2010 Jul;27(7):1495-503
pubmed: 20142438
Cold Spring Harb Protoc. 2009 Feb;2009(2):pdb.prot5136
pubmed: 20147066
Genome Res. 1998 Mar;8(3):175-85
pubmed: 9521921
Nucleic Acids Res. 1999 Jan 1;27(1):260-2
pubmed: 9847196
Bioinformatics. 2016 Mar 1;32(5):767-9
pubmed: 26559507
Bioinformatics. 2010 Mar 15;26(6):841-2
pubmed: 20110278
EMBO J. 2019 Mar 15;38(6):
pubmed: 30609993
Genome Biol. 2015 Aug 06;16:157
pubmed: 26243257