A reference-based multi-lattice indexing method integrating prior information correction and iterative refinement in protein crystallography.

MCDPS data reduction indexing algorithm multi-crystal data processing suite multi-crystal diffraction protein crystallography

Journal

Acta crystallographica. Section A, Foundations and advances
ISSN: 2053-2733
Titre abrégé: Acta Crystallogr A Found Adv
Pays: United States
ID NLM: 101620182

Informations de publication

Date de publication:
01 Jul 2021
Historique:
received: 20 01 2021
accepted: 01 04 2021
entrez: 1 7 2021
pubmed: 2 7 2021
medline: 15 12 2021
Statut: ppublish

Résumé

A new multi-lattice indexing method based on the principle of whole-pattern matching given cell dimensions and space-group symmetry is presented for macromolecular crystallography. The proposed method, termed the multi-crystal data processing suite (MCDPS), features a local correction for prior information accompanied by iterative refinement of experimental parameters, both of which are numerically and experimentally demonstrated to be critical for accurately identifying multiple crystal lattices. Further analysis of data reduction and structure determination with conventional single-crystal programs reveals that the processed multi-lattice data sets are comparable in quality to typical single-crystal ones in terms of crystallographic metrics. Importantly, it is confirmed that careful exclusion of overlapping reflections prior to scaling is necessary to guarantee an accurate data reduction result. The potential for multi-lattice indexing in solving the general macroscopic twinning problem is also explored.

Identifiants

pubmed: 34196290
pii: S2053273321003521
doi: 10.1107/S2053273321003521
doi:

Substances chimiques

Macromolecular Substances 0
Proteins 0

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

277-288

Subventions

Organisme : National Basic Research Program of China
ID : 2017YFA0504900
Organisme : Beijing Municipal Science & Technology Commission
ID : Z191100007219007
Organisme : Strategic Priority Research Program of CAS
ID : XDB37040302
Organisme : CAS Emergency Research Project on African Swine Fever
ID : KJZD-SW-L06-01

Auteurs

Qiang Zhou (Q)

Beijing Synchrotron Radiation Facility, Institute of High Energy Physics, Chinese Academy of Sciences, Beijing, 100049, People's Republic of China.

Zeng Qiang Gao (ZQ)

Beijing Synchrotron Radiation Facility, Institute of High Energy Physics, Chinese Academy of Sciences, Beijing, 100049, People's Republic of China.

Zheng Dong (Z)

Beijing Synchrotron Radiation Facility, Institute of High Energy Physics, Chinese Academy of Sciences, Beijing, 100049, People's Republic of China.

Yu Meng Jiang (YM)

Beijing Synchrotron Radiation Facility, Institute of High Energy Physics, Chinese Academy of Sciences, Beijing, 100049, People's Republic of China.

Zhun She (Z)

Beijing Synchrotron Radiation Facility, Institute of High Energy Physics, Chinese Academy of Sciences, Beijing, 100049, People's Republic of China.

Zhi Geng (Z)

Beijing Synchrotron Radiation Facility, Institute of High Energy Physics, Chinese Academy of Sciences, Beijing, 100049, People's Republic of China.

Yu Hui Dong (YH)

Beijing Synchrotron Radiation Facility, Institute of High Energy Physics, Chinese Academy of Sciences, Beijing, 100049, People's Republic of China.

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Classifications MeSH