Identification of transfer RNA-derived fragments and their potential roles in aortic dissection.


Journal

Genomics
ISSN: 1089-8646
Titre abrégé: Genomics
Pays: United States
ID NLM: 8800135

Informations de publication

Date de publication:
09 2021
Historique:
received: 28 01 2021
revised: 19 05 2021
accepted: 27 06 2021
pubmed: 3 7 2021
medline: 1 4 2022
entrez: 2 7 2021
Statut: ppublish

Résumé

Emerging evidence suggests that majority of the transfer RNA (tRNA)-derived small RNA, including tRNA-derived fragments (tRFs) and tRNA halves (tiRNAs), play a significant role in the molecular mechanisms underlying some human diseases. However, expression of tRFs/tiRNAs and their potential roles in aortic dissection (AD) remain unclear. This study examined the expression characteristics and explored the functional roles of tRFs/tiRNAs in AD using RNA-sequencing, bioinformatics, real-time quantitative reverse transcription polymerase chain reaction, and loss- and gain-of-function analysis. Results revealed that a total of 41 tRFs/tiRNAs were dysregulated in the AD group compared to the control group. Among them, 12 were upregulated and 29 were downregulated (fold change≥1.5 and p < 0.05). RT-qPCR results revealed that expressions of tRF-1:30-chrM.Met-CAT was significantly upregulated, while that of tRF-54:71-chrM.Trp-TCA and tRF-1:32-chrM.Cys-GCA were notably downregulated; expression patterns were consistent with the RNA sequencing data. Bioinformatic analysis showed that a variety of related pathways might be involved in the pathogenesis of AD. Functionally, tRF-1:30-chrM.Met-CAT could facilitate proliferation, migration, and phenotype switching in vascular smooth muscle cells (VSMCs), which might serve as a significant regulator in the progression of AD. In summary, the study illustrated that tRFs/tiRNAs expressed in AD tissues have potential biological functions and may act as promising biomarkers or therapeutic targets for AD.

Identifiants

pubmed: 34214628
pii: S0888-7543(21)00256-1
doi: 10.1016/j.ygeno.2021.06.039
pii:
doi:

Substances chimiques

Biomarkers 0
RNA, Transfer 9014-25-9

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

3039-3049

Informations de copyright

Copyright © 2021 Elsevier Inc. All rights reserved.

Auteurs

Xiuxiu Fu (X)

Department of Cardiac Ultrasound, The Affiliated Hospital of Qingdao University, Qingdao 266000, China.

Xingqiang He (X)

Department of Cardiology, Xijing Hospital, Fourth Military Medical University, 169 West Changle Road, Xi'an 710032, People's Republic of China.

Yanyan Yang (Y)

Department of Immunology, Basic Medicine School, Qingdao University, No. 308 Ningxia Road, Qingdao 266071, People's Republic of China.

Shaoyan Jiang (S)

Department of Cardiology, The Affiliated Cardiovascular Hospital of Qingdao University, Qingdao 266000, People's Republic of China.

Shizhong Wang (S)

The department of Cardiology surgery, The Affiliated Hospital of Qingdao University, Qingdao 266000, China.

Xingang Peng (X)

The department of emergency general surgery, The Affiliated Hospital of Qingdao University, Qingdao 266000, China.

Guozhang Tang (G)

Department of Cardiac Ultrasound, The Affiliated Hospital of Qingdao University, Qingdao 266000, China.

Tingyu Zong (T)

Department of Cardiac Ultrasound, The Affiliated Hospital of Qingdao University, Qingdao 266000, China.

Xiaolu Li (X)

Department of Cardiac Ultrasound, The Affiliated Hospital of Qingdao University, Qingdao 266000, China.

Ying Zhang (Y)

Department of Cardiac Ultrasound, The Affiliated Hospital of Qingdao University, Qingdao 266000, China.

Yulin Zou (Y)

Department of Cardiac Ultrasound, The Affiliated Hospital of Qingdao University, Qingdao 266000, China.

Tao Yu (T)

Department of Cardiac Ultrasound, The Affiliated Hospital of Qingdao University, Qingdao 266000, China; Institute for Translational Medicine, The Affiliated Hospital of Qingdao University, No. 38 Dengzhou Road, Qingdao 266021, People's Republic of China.. Electronic address: yutao0112@qdu.edu.cn.

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