Molecular detection and genomic characterization of diverse hepaciviruses in African rodents.

Hepatits C virus cross-species transmission hepacivirus co-infection recombination rodent hepacivirus

Journal

Virus evolution
ISSN: 2057-1577
Titre abrégé: Virus Evol
Pays: England
ID NLM: 101664675

Informations de publication

Date de publication:
Jan 2021
Historique:
entrez: 5 7 2021
pubmed: 6 7 2021
medline: 6 7 2021
Statut: epublish

Résumé

Hepatitis C virus (HCV; genus

Identifiants

pubmed: 34221451
doi: 10.1093/ve/veab036
pii: veab036
pmc: PMC8242229
doi:

Types de publication

Journal Article

Langues

eng

Pagination

veab036

Subventions

Organisme : Wellcome Trust
Pays : United Kingdom

Informations de copyright

© The Author(s) 2021. Published by Oxford University Press.

Références

mBio. 2013 Apr 09;4(2):e00216-13
pubmed: 23572554
J Virol. 2015 Jun;89(11):5876-82
pubmed: 25787289
AIDS Res Hum Retroviruses. 1995 Nov;11(11):1423-5
pubmed: 8573403
Mol Biol Evol. 2018 Dec 1;35(12):3041-3043
pubmed: 30351396
J Comput Biol. 2012 May;19(5):455-77
pubmed: 22506599
Sci China Life Sci. 2019 May;62(5):701-704
pubmed: 30701456
Virology. 2015 Feb;476:249-256
pubmed: 25559385
AIDS Res Hum Retroviruses. 2005 Jan;21(1):98-102
pubmed: 15665649
Methods Mol Biol. 2009;537:39-64
pubmed: 19378139
Annu Rev Virol. 2016 Sep 29;3(1):53-75
pubmed: 27741408
Arch Virol. 2019 Feb;164(2):509-522
pubmed: 30460488
Proc Natl Acad Sci U S A. 2020 Apr 28;117(17):9423-9430
pubmed: 32284401
One Health Outlook. 2019 Dec 12;1:5
pubmed: 33829126
Emerg Infect Dis. 2010 Apr;16(4):692-5
pubmed: 20350390
Genetics. 2006 Mar;172(3):1411-25
pubmed: 16387887
Curr Opin Virol. 2016 Feb;16:1-7
pubmed: 26517843
J Virol. 2012 Feb;86(4):2212-20
pubmed: 22114341
PLoS Pathog. 2013;9(6):e1003438
pubmed: 23818848
Integr Zool. 2009 Jun;4(2):196-212
pubmed: 21392290
Bioinformatics. 2000 Jun;16(6):562-3
pubmed: 10980155
PLoS Pathog. 2017 Jan 11;13(1):e1006073
pubmed: 28076397
Science. 2017 Jul 14;357(6347):204-208
pubmed: 28706073
Bioinformatics. 2014 Nov 15;30(22):3276-8
pubmed: 25095880
Hepatol Res. 2015 Dec;45(13):1292-8
pubmed: 25689487
Virology. 2015 Oct;484:93-102
pubmed: 26086431
BMC Genomics. 2018 Aug 16;19(1):617
pubmed: 30115009
Emerg Infect Dis. 2012 Dec;18(12):1976-82
pubmed: 23171728
Proc Natl Acad Sci U S A. 2013 May 14;110(20):8194-9
pubmed: 23610427
J Virol. 2019 Jan 17;93(3):
pubmed: 30404810
Proc Natl Acad Sci U S A. 2015 Jun 2;112(22):7039-44
pubmed: 26038558
BMC Evol Biol. 2010 Jul 13;10:210
pubmed: 20626897
Bioinformatics. 2014 Aug 1;30(15):2114-20
pubmed: 24695404
BMC Ecol Evol. 2021 May 19;21(1):89
pubmed: 34011264
Nature. 2018 Apr;556(7700):197-202
pubmed: 29618816
J Virol. 2015 Jul;89(14):7007-15
pubmed: 25926652
Bioinformatics. 2019 Feb 1;35(3):526-528
pubmed: 30016406
Virus Evol. 2015 May 26;1(1):vev003
pubmed: 27774277
Virus Evol. 2020 Aug 20;6(2):veaa064
pubmed: 33240526
Virus Evol. 2020 Apr 25;6(2):veaa033
pubmed: 32704383
Philos Trans R Soc Lond B Biol Sci. 2013 Feb 04;368(1614):20120205
pubmed: 23382427
Nat Commun. 2019 Mar 7;10(1):1113
pubmed: 30846697
J Hepatol. 2017 Oct;67(4):680-686
pubmed: 28619439
Vector Borne Zoonotic Dis. 2017 Apr;17(4):278-280
pubmed: 28075239
BMC Evol Biol. 2008 Jul 10;8:199
pubmed: 18616808
J Virol. 1999 Jan;73(1):152-60
pubmed: 9847317
J Virol. 2006 Nov;80(22):11094-104
pubmed: 17071929
Biodivers Data J. 2019 Dec 20;7:e46948
pubmed: 31885462
Mol Biol Evol. 2018 Jan 1;35(1):247-251
pubmed: 29029186
Bioinformatics. 2010 Aug 1;26(15):1907-9
pubmed: 20525823
J Virol. 2012 Jun;86(11):6171-8
pubmed: 22491452
Viruses. 2011 Oct;3(10):2006-24
pubmed: 22069526
mBio. 2014 Oct 14;5(5):e01933-14
pubmed: 25316698
Proc Natl Acad Sci U S A. 2011 Jul 12;108(28):11608-13
pubmed: 21610165
J Virol. 2013 Aug;87(16):8971-81
pubmed: 23740998
Nat Methods. 2012 Mar 04;9(4):357-9
pubmed: 22388286
Viruses. 2018 Feb 28;10(3):
pubmed: 29495551
Sci Adv. 2018 Mar 28;4(3):eaar6603
pubmed: 29670947
Methods Ecol Evol. 2015 Jan;6(1):83-91
pubmed: 25893087
J Gen Virol. 2019 Aug;100(8):1234-1240
pubmed: 31282853
Mol Biol Evol. 2015 Jan;32(1):268-74
pubmed: 25371430
Genome Biol Evol. 2015 Oct 21;7(11):2996-3008
pubmed: 26494702
J Virol. 2016 Dec 16;91(1):
pubmed: 27795428
Mol Biol Evol. 2020 Feb 1;37(2):599-603
pubmed: 31633786
Genetics. 2006 Apr;172(4):2665-81
pubmed: 16489234
Mol Biol Evol. 2020 Nov 1;37(11):3363-3379
pubmed: 32895707
Sci Rep. 2019 Oct 18;9(1):14953
pubmed: 31628350
Virus Evol. 2016 Apr 09;2(1):vew007
pubmed: 27774300
BMC Evol Biol. 2011 May 19;11:131
pubmed: 21595904
Hepatology. 2015 Jan;61(1):77-87
pubmed: 25069599
Bioinformatics. 2011 Mar 15;27(6):863-4
pubmed: 21278185
Mol Biol Evol. 2016 Jul;33(7):1870-4
pubmed: 27004904
Crit Rev Microbiol. 2007;33(4):231-42
pubmed: 18033594
Nature. 2013 Jun 20;498(7454):310-1
pubmed: 23783626
Science. 1989 Apr 21;244(4902):359-62
pubmed: 2523562
Nucleic Acids Res. 2004 Mar 19;32(5):1792-7
pubmed: 15034147
J Gen Virol. 2016 Nov;97(11):2894-2907
pubmed: 27692039
Nat Rev Microbiol. 2017 Mar;15(3):161-168
pubmed: 28134265
PLoS One. 2020 Jan 3;15(1):e0227114
pubmed: 31899786
Mol Biol Evol. 2010 Feb;27(2):221-4
pubmed: 19854763
Emerg Infect Dis. 2012 Dec;18(12):2047-50
pubmed: 23171649

Auteurs

Magda Bletsa (M)

Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Leuven, Belgium.

Bram Vrancken (B)

Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Leuven, Belgium.

Sophie Gryseels (S)

Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Leuven, Belgium.
Department of Biology, Evolutionary Ecology Group, University of Antwerp, Antwerp, Belgium.

Ine Boonen (I)

Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Leuven, Belgium.

Antonios Fikatas (A)

Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Leuven, Belgium.

Yiqiao Li (Y)

Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Leuven, Belgium.

Anne Laudisoit (A)

EcoHealth Alliance, New York, NY, USA.

Sebastian Lequime (S)

Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Leuven, Belgium.

Josef Bryja (J)

Institute of Vertebrate Biology of the Czech Academy of Sciences, Brno, Czech Republic.

Rhodes Makundi (R)

Pest Management Center -Sokoine University of Agriculture, Morogoro, Tanzania.

Yonas Meheretu (Y)

Department of Biology and Institute of Mountain Research & Development, Mekelle University, Mekelle, Ethiopia.

Benjamin Dudu Akaibe (BD)

Department of Ecology and Animal Resource Management, Faculty of Science, Biodiversity Monitoring Center, University of Kisangani, Kisangani, Democratic Republic of the Congo.

Sylvestre Gambalemoke Mbalitini (SG)

Department of Ecology and Animal Resource Management, Faculty of Science, Biodiversity Monitoring Center, University of Kisangani, Kisangani, Democratic Republic of the Congo.

Frederik Van de Perre (F)

Department of Biology, Evolutionary Ecology Group, University of Antwerp, Antwerp, Belgium.

Natalie Van Houtte (N)

Department of Biology, Evolutionary Ecology Group, University of Antwerp, Antwerp, Belgium.

Jana Těšíková (J)

Institute of Vertebrate Biology of the Czech Academy of Sciences, Brno, Czech Republic.
Department of Botany and Zoology, Faculty of Science, Masaryk University, Brno, Czech Republic.

Elke Wollants (E)

Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Leuven, Belgium.

Marc Van Ranst (M)

Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Leuven, Belgium.

Oliver G Pybus (OG)

Department of Zoology, University of Oxford, Oxford, UK.
Department of Pathobiology and Population Sciences, The Royal Veterinary College, London, UK.

Jan Felix Drexler (JF)

Charite-Universitatsmedizin Berlin, Berlin, Germany.
German Center for Infection Research (DZIF), Berlin, Germany.

Erik Verheyen (E)

Department of Biology, Evolutionary Ecology Group, University of Antwerp, Antwerp, Belgium.
OD Taxonomy and Phylogeny-Royal Belgian Institute of Natural Sciences, Brussels, Belgium.

Herwig Leirs (H)

Department of Biology, Evolutionary Ecology Group, University of Antwerp, Antwerp, Belgium.

Joelle Gouy de Bellocq (J)

Institute of Vertebrate Biology of the Czech Academy of Sciences, Brno, Czech Republic.

Philippe Lemey (P)

Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Leuven, Belgium.

Classifications MeSH