Water-biomolecule clusters studied by photoemission spectroscopy and multilevel atomistic simulations: hydration or solvation?


Journal

Physical chemistry chemical physics : PCCP
ISSN: 1463-9084
Titre abrégé: Phys Chem Chem Phys
Pays: England
ID NLM: 100888160

Informations de publication

Date de publication:
21 Jul 2021
Historique:
pubmed: 8 7 2021
medline: 10 8 2021
entrez: 7 7 2021
Statut: ppublish

Résumé

The properties of mixed water-uracil nanoaggregates have been probed by core electron-photoemission measurements to investigate supramolecular assembly in the gas phase driven by weak interactions. The interpretation of the measurements has been assisted by multilevel atomistic simulations, based on semi-empirical tight-binding and DFT-based methods. Our protocol established a positive-feedback loop between experimental and computational techniques, which has enabled a sound and detailed atomistic description of such complex heterogeneous molecular aggregates. Among biomolecules, uracil offers interesting and generalized skeletal features; its structure encompasses an alternation of hydrophilic H-bond donor and acceptor sites and hydrophobic moieties, typical in biomolecular systems, that induces a supramolecular core-shell-like organization of the mixed clusters with a water core and an uracil shell. This structure is far from typical models of both solid-state hydration, with water molecules in defined positions, or liquid solvation, where disconnected uracil molecules are completely surrounded by water.

Identifiants

pubmed: 34231588
doi: 10.1039/d1cp02031e
doi:

Substances chimiques

Solvents 0
Water 059QF0KO0R
Uracil 56HH86ZVCT

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

15049-15058

Auteurs

Giuseppe Mattioli (G)

CNR-Istituto di Struttura della Materia, Area della Ricerca di Roma 1, CP 10, Monterotondo Scalo, Italy. lorenzo.avaldi@ism.cnr.it.

Lorenzo Avaldi (L)

CNR-Istituto di Struttura della Materia, Area della Ricerca di Roma 1, CP 10, Monterotondo Scalo, Italy. lorenzo.avaldi@ism.cnr.it.

Paola Bolognesi (P)

CNR-Istituto di Struttura della Materia, Area della Ricerca di Roma 1, CP 10, Monterotondo Scalo, Italy. lorenzo.avaldi@ism.cnr.it.

John D Bozek (JD)

Synchrotron SOLEIL, L'Orme de Merisiers, 91192, Saint Aubin, BP48, 1192, Gif-sur-Yvette Cedex, France.

Mattea C Castrovilli (MC)

CNR-Istituto di Struttura della Materia, Area della Ricerca di Roma 1, CP 10, Monterotondo Scalo, Italy. lorenzo.avaldi@ism.cnr.it.

Jacopo Chiarinelli (J)

CNR-Istituto di Struttura della Materia, Area della Ricerca di Roma 1, CP 10, Monterotondo Scalo, Italy. lorenzo.avaldi@ism.cnr.it.

Alicja Domaracka (A)

Normandie Univ., ENSICAEN, UNICAEN, CEA, CNRS, CIMAP, 14000 Caen, France.

Suvasthika Indrajith (S)

Normandie Univ., ENSICAEN, UNICAEN, CEA, CNRS, CIMAP, 14000 Caen, France.

Sylvain Maclot (S)

Physics Department, University of Gothenburg, Origovägen 6B, 41296 Göteborg, Sweden.

Aleksandar R Milosavljević (AR)

Synchrotron SOLEIL, L'Orme de Merisiers, 91192, Saint Aubin, BP48, 1192, Gif-sur-Yvette Cedex, France.

Chiara Nicolafrancesco (C)

Synchrotron SOLEIL, L'Orme de Merisiers, 91192, Saint Aubin, BP48, 1192, Gif-sur-Yvette Cedex, France and Normandie Univ., ENSICAEN, UNICAEN, CEA, CNRS, CIMAP, 14000 Caen, France.

Patrick Rousseau (P)

Normandie Univ., ENSICAEN, UNICAEN, CEA, CNRS, CIMAP, 14000 Caen, France.

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Classifications MeSH