Barcode sequencing and a high-throughput assay for chronological lifespan uncover ageing-associated genes in fission yeast.

Bar-seq S. pombe cellular ageing competitive growth lifespan mutants longevity parallel genetic screen

Journal

Microbial cell (Graz, Austria)
ISSN: 2311-2638
Titre abrégé: Microb Cell
Pays: Austria
ID NLM: 101632887

Informations de publication

Date de publication:
05 Jul 2021
Historique:
received: 03 03 2021
revised: 20 04 2021
accepted: 26 04 2021
entrez: 12 7 2021
pubmed: 13 7 2021
medline: 13 7 2021
Statut: epublish

Résumé

Ageing-related processes are largely conserved, with simple organisms remaining the main platform to discover and dissect new ageing-associated genes. Yeasts provide potent model systems to study cellular ageing owing their amenability to systematic functional assays under controlled conditions. Even with yeast cells, however, ageing assays can be laborious and resource-intensive. Here we present improved experimental and computational methods to study chronological lifespan in

Identifiants

pubmed: 34250083
doi: 10.15698/mic2021.07.754
pii: MIC0271E115
pmc: PMC8246024
doi:

Types de publication

Journal Article

Langues

eng

Pagination

146-160

Subventions

Organisme : Wellcome Trust
Pays : United Kingdom
Organisme : Arthritis Research UK
ID : FC001134
Pays : United Kingdom

Informations de copyright

Copyright: © 2021 Romila et al.

Déclaration de conflit d'intérêts

Conflict of Interest: The authors declare to have no conflicts of interest.

Références

Elife. 2020 Jun 16;9:
pubmed: 32543370
Nature. 2017 Aug 22;548(7668):387-388
pubmed: 28836615
Mol Cell Biol. 2017 Jun 15;37(13):
pubmed: 28373292
Open Biol. 2019 Feb 28;9(2):180241
pubmed: 30938578
Sci Rep. 2016 May 09;6:25533
pubmed: 27156886
Hum Genet. 2020 Mar;139(3):277-290
pubmed: 31144030
Mol Microbiol. 2021 Apr;115(4):623-642
pubmed: 33064911
Mech Ageing Dev. 2017 Jan;161(Pt B):288-305
pubmed: 27181083
PLoS Genet. 2010 Jul 15;6(7):e1001024
pubmed: 20657825
Sci Rep. 2016 Jan 25;6:19629
pubmed: 26804466
G3 (Bethesda). 2014 Dec 01;5(1):145-55
pubmed: 25452419
Nat Commun. 2017 Feb 21;8:14256
pubmed: 28220799
Trends Cell Biol. 2011 Oct;21(10):569-76
pubmed: 21824781
G3 (Bethesda). 2014 Mar 20;4(3):547-52
pubmed: 24474170
Yeast. 1998 Jul;14(10):943-51
pubmed: 9717240
Nucleic Acids Res. 2017 Jan 4;45(D1):D877-D887
pubmed: 27899610
Genome Biol. 2010;11(6):R60
pubmed: 20537132
Methods Enzymol. 1991;194:795-823
pubmed: 2005825
Biochim Biophys Acta Mol Cell Res. 2019 May;1866(5):957-970
pubmed: 30796938
Am J Hum Genet. 2009 Oct;85(4):521-7
pubmed: 19781681
Annu Rev Biochem. 2011;80:885-916
pubmed: 21495846
J Hum Genet. 2003;48(8):415-419
pubmed: 12938016
Cell. 2013 Jun 6;153(6):1194-217
pubmed: 23746838
Sci Rep. 2017 Mar 10;7:44257
pubmed: 28281664
Nature. 2010 Mar 25;464(7288):513-9
pubmed: 20336133
Science. 2003 Feb 28;299(5611):1342-6
pubmed: 12610293
Elife. 2021 Jan 26;10:
pubmed: 33494859
PLoS Genet. 2014 Feb 27;10(2):e1004168
pubmed: 24586198
Cell Death Differ. 2019 Mar;26(4):630-639
pubmed: 30647432
Ageing Res Rev. 2016 Dec;32:2-12
pubmed: 27125853
Front Cell Dev Biol. 2020 Apr 15;8:239
pubmed: 32373609
Front Cell Dev Biol. 2019 Nov 28;7:301
pubmed: 31850341
Curr Genomics. 2012 Nov;13(7):533-47
pubmed: 23633913
Aging Cell. 2013 Aug;12(4):563-73
pubmed: 23551936
PLoS Genet. 2009 Mar;5(3):e1000408
pubmed: 19266076
Front Genet. 2015 Nov 16;6:330
pubmed: 26635866
Nat Commun. 2020 Apr 24;11(1):1973
pubmed: 32332728
Exp Gerontol. 2009 Aug;44(8):493-502
pubmed: 19409973
Yeast. 2018 May;35(5):387-396
pubmed: 29277922
Nature. 1993 Dec 2;366(6454):461-4
pubmed: 8247153
FEMS Microbiol Lett. 2007 Jan;266(1):119-27
pubmed: 17233722
Mol Cell. 2016 Mar 3;61(5):654-666
pubmed: 26942670
Nucleic Acids Res. 2019 Jan 8;47(D1):D506-D515
pubmed: 30395287
Genetics. 2018 Oct;210(2):733-744
pubmed: 30072377
Geriatr Gerontol Int. 2010 Jul;10 Suppl 1:S32-40
pubmed: 20590840
Nucleic Acids Res. 2019 Jan 8;47(D1):D821-D827
pubmed: 30321395
Aging Cell. 2010 Apr;9(2):105-12
pubmed: 20096035
Bioinformatics. 2010 Jan 1;26(1):139-40
pubmed: 19910308
Curr Genet. 2017 Oct;63(5):839-843
pubmed: 28444510
Microb Cell. 2019 Aug 20;6(9):397-413
pubmed: 31528631
Methods Mol Biol. 2021;2196:229-233
pubmed: 32889725
Nat Methods. 2012 Mar 04;9(4):357-9
pubmed: 22388286
Cell Metab. 2012 Jul 3;16(1):55-67
pubmed: 22768839
Bioinformatics. 2014 Mar 1;30(5):614-20
pubmed: 24142950
J Biol Chem. 2007 Sep 7;282(36):26132-9
pubmed: 17617668
Biochim Biophys Acta. 2013 May;1830(5):3143-53
pubmed: 22995213
Ophthalmology. 2018 May;125(5):664-670
pubmed: 29310965
Commun Integr Biol. 2012 Mar 1;5(2):134-9
pubmed: 22808316
Nat Biotechnol. 2010 Jun;28(6):617-623
pubmed: 20473289
Medicines (Basel). 2019 Sep 03;6(3):
pubmed: 31484367
Nucleic Acids Res. 2018 Jan 4;46(D1):D1083-D1090
pubmed: 29121237
EMBO J. 2010 Mar 3;29(5):981-91
pubmed: 20075862
Biol Open. 2014 Feb 15;3(2):161-71
pubmed: 24463365
Mol Syst Biol. 2014 Nov 28;10:764
pubmed: 25432776
J Biol Methods. 2018 Dec 18;5(4):e106
pubmed: 31453256
PLoS One. 2019 Jul 17;14(7):e0219926
pubmed: 31314787
Cell Metab. 2010 Jun 9;11(6):453-65
pubmed: 20519118
Exp Gerontol. 2016 Dec 15;86:113-123
pubmed: 27125759
Aging Cell. 2006 Aug;5(4):345-57
pubmed: 16822282
Genome Res. 2020 May;30(5):697-710
pubmed: 32277013
Nat Rev Genet. 2002 Mar;3(3):165-75
pubmed: 11972154
J Neurochem. 2017 Nov;143(4):418-431
pubmed: 28397282
Nat Commun. 2019 Apr 3;10(1):1523
pubmed: 30944313
Mol Syst Biol. 2020 Mar;16(3):e9195
pubmed: 32187448
Genes Dev. 2006 Jan 15;20(2):174-84
pubmed: 16418483
Cell. 2012 Oct 26;151(3):671-83
pubmed: 23101633
Bioinformatics. 2013 Jul 01;29(13):1671-8
pubmed: 23658422
Curr Biol. 2012 Sep 11;22(17):R741-52
pubmed: 22975005
Nat Rev Microbiol. 2006 Feb;4(2):113-20
pubmed: 16415927
Bioinformatics. 2010 Mar 15;26(6):841-2
pubmed: 20110278
PLoS Genet. 2010 Apr 22;6(4):e1000921
pubmed: 20421943
Front Genet. 2020 May 14;11:468
pubmed: 32477409
Crit Rev Biochem Mol Biol. 2016;51(2):86-95
pubmed: 26523839

Auteurs

Catalina A Romila (CA)

Institute of Healthy Ageing and Department of Genetics, Evolution & Environment, University College London, London WC1E 6BT, UK.
These authors contributed equally.

StJohn Townsend (S)

Institute of Healthy Ageing and Department of Genetics, Evolution & Environment, University College London, London WC1E 6BT, UK.
The Francis Crick Institute, Molecular Biology of Metabolism Laboratory, London, NW1 1AT, UK.
These authors contributed equally.

Michal Malecki (M)

Institute of Healthy Ageing and Department of Genetics, Evolution & Environment, University College London, London WC1E 6BT, UK.
Current address: Institute of Genetics and Biotechnology, Faculty of Biology, University of Warsaw, Poland.

Stephan Kamrad (S)

Institute of Healthy Ageing and Department of Genetics, Evolution & Environment, University College London, London WC1E 6BT, UK.
The Francis Crick Institute, Molecular Biology of Metabolism Laboratory, London, NW1 1AT, UK.
Current address: Charité Universitätsmedizin Berlin, Department of Biochemistry, Germany.

María Rodríguez-López (M)

Institute of Healthy Ageing and Department of Genetics, Evolution & Environment, University College London, London WC1E 6BT, UK.

Olivia Hillson (O)

Institute of Healthy Ageing and Department of Genetics, Evolution & Environment, University College London, London WC1E 6BT, UK.

Cristina Cotobal (C)

Institute of Healthy Ageing and Department of Genetics, Evolution & Environment, University College London, London WC1E 6BT, UK.

Markus Ralser (M)

The Francis Crick Institute, Molecular Biology of Metabolism Laboratory, London, NW1 1AT, UK.
Charité Universitätsmedizin Berlin, Department of Biochemistry, Germany.

Jürg Bähler (J)

Institute of Healthy Ageing and Department of Genetics, Evolution & Environment, University College London, London WC1E 6BT, UK.

Classifications MeSH