Glycan-protein cross-linking mass spectrometry reveals sialic acid-mediated protein networks on cell surfaces.


Journal

Chemical science
ISSN: 2041-6520
Titre abrégé: Chem Sci
Pays: England
ID NLM: 101545951

Informations de publication

Date de publication:
01 Jul 2021
Historique:
received: 08 02 2021
accepted: 17 05 2021
entrez: 14 7 2021
pubmed: 15 7 2021
medline: 15 7 2021
Statut: epublish

Résumé

A cross-linking method is developed to elucidate glycan-mediated interactions between membrane proteins through sialic acids. The method provides information on previously unknown extensive glycomic interactions on cell membranes. The vast majority of membrane proteins are glycosylated with complicated glycan structures attached to the polypeptide backbone. Glycan-protein interactions are fundamental elements in many cellular events. Although significant advances have been made to identify protein-protein interactions in living cells, only modest advances have been made on glycan-protein interactions. Mechanistic elucidation of glycan-protein interactions has thus far remained elusive. Therefore, we developed a cross-linking mass spectrometry (XL-MS) workflow to directly identify glycan-protein interactions on the cell membrane using liquid chromatography-mass spectrometry (LC-MS). This method involved incorporating azido groups on cell surface glycans through biosynthetic pathways, followed by treatment of cell cultures with a synthesized reagent,

Identifiants

pubmed: 34257876
doi: 10.1039/d1sc00814e
pii: d1sc00814e
pmc: PMC8246274
doi:

Types de publication

Journal Article

Langues

eng

Pagination

8767-8777

Subventions

Organisme : NIGMS NIH HHS
ID : R01 GM049077
Pays : United States

Informations de copyright

This journal is © The Royal Society of Chemistry.

Déclaration de conflit d'intérêts

There are no conflicts with this report.

Références

Proc Natl Acad Sci U S A. 2015 Dec 1;112(48):14876-81
pubmed: 26578804
Anal Bioanal Chem. 2017 Jan;409(2):395-410
pubmed: 27590322
Nat Rev Immunol. 2008 Nov;8(11):874-87
pubmed: 18846099
J Comput Chem. 2004 Oct;25(13):1605-12
pubmed: 15264254
Cell. 2015 Jul 16;162(2):425-440
pubmed: 26186194
J Mass Spectrom. 2009 May;44(5):694-706
pubmed: 19132714
Anal Chem. 2018 Jan 2;90(1):144-165
pubmed: 29160693
Biochemistry. 2009 Aug 4;48(30):7261-70
pubmed: 19527073
Biomolecules. 2015 Sep 01;5(3):2056-72
pubmed: 26340640
Nucleic Acids Res. 2019 Jan 8;47(D1):D459-D463
pubmed: 30329070
J Am Chem Soc. 2008 Mar 19;130(11):3278-9
pubmed: 18293988
Trends Mol Med. 2008 Aug;14(8):351-60
pubmed: 18606570
Proc Natl Acad Sci U S A. 2020 Jan 7;117(1):93-102
pubmed: 31848235
Nat Commun. 2018 Apr 17;9(1):1519
pubmed: 29666374
J Exp Clin Cancer Res. 2017 May 12;36(1):65
pubmed: 28494797
Carbohydr Res. 2009 Aug 17;344(12):1387-90
pubmed: 19508951
Mol Cell Proteomics. 2010 Jun;9(6):1339-51
pubmed: 20172905
Proc Natl Acad Sci U S A. 2015 Jun 2;112(22):6955-60
pubmed: 25971727
Chem Rev. 2020 May 27;120(10):4355-4454
pubmed: 32319757
Chem Rev. 2018 Sep 12;118(17):7886-7930
pubmed: 29553244
Chem Soc Rev. 2013 May 21;42(10):4284-96
pubmed: 23257905
Chem Sci. 2019 May 14;10(24):6199-6209
pubmed: 31360427
Cell Syst. 2018 Jan 24;6(1):136-141.e5
pubmed: 29199018
Int J Cancer. 1998 Jan 5;75(1):105-11
pubmed: 9426697
Nat Biotechnol. 2012 Oct;30(10):997-1001
pubmed: 22983091
Cell Signal. 2014 Dec;26(12):2683-93
pubmed: 25172424
J Mol Biol. 2016 Feb 22;428(4):720-725
pubmed: 26410586
Glycobiology. 2017 Jul 1;27(7):601-618
pubmed: 28430973
Nat Protoc. 2020 Aug;15(8):2668-2704
pubmed: 32681150
Nat Protoc. 2018 Dec;13(12):2864-2889
pubmed: 30382245
Nat Commun. 2019 Jul 30;10(1):3404
pubmed: 31363125
Chem Sci. 2020 Aug 17;11(35):9501-9512
pubmed: 34094216
Nat Chem Biol. 2005 Jul;1(2):93-7
pubmed: 16408005
Exp Cell Res. 2008 Oct 1;314(16):2941-50
pubmed: 18703050
FEBS Lett. 2006 May 15;580(11):2637-45
pubmed: 16650408
Bioinformatics. 2015 Oct 1;31(19):3222-4
pubmed: 26026169
J Biol Chem. 2004 Aug 20;279(34):35201-9
pubmed: 15201278
Nat Commun. 2017 May 19;8:15473
pubmed: 28524877
Nat Rev Mol Cell Biol. 2019 Aug;20(8):457-473
pubmed: 31182865
J Cell Biol. 2012 Apr 2;197(1):131-40
pubmed: 22451694
Anal Chem. 2019 Aug 6;91(15):10236-10244
pubmed: 31283178
Anal Chem. 2020 Jul 7;92(13):9086-9094
pubmed: 32441507

Auteurs

Yixuan Xie (Y)

Department of Chemistry, University of California Davis California USA.

Siyu Chen (S)

Department of Chemistry, University of California Davis California USA.

Qiongyu Li (Q)

Department of Chemistry, University of California Davis California USA.

Ying Sheng (Y)

Department of Chemistry, Biochemistry, Molecular, Cellular and Developmental Biology Graduate Group, University of California Davis California USA.

Michael Russelle Alvarez (MR)

Institute of Chemistry, University of the Philippines Los Baños Laguna Philippines.

Joeriggo Reyes (J)

Marine Science Institute, University of the Philippines Diliman Quezon City Philippines.

Gege Xu (G)

Department of Chemistry, University of California Davis California USA.

Kemal Solakyildirim (K)

Department of Chemistry, University of California Davis California USA.
Department of Chemistry, Erzincan Binali Yildirim University Erzincan Turkey cblebrilla@ucdavis.edu.

Carlito B Lebrilla (CB)

Department of Chemistry, University of California Davis California USA.
Department of Biochemistry, University of California Davis California USA.

Classifications MeSH