Genetic connectivity of two marine gastropods in the Mediterranean Sea: seascape genetics reveals species-specific oceanographic drivers of gene flow.

Dendropoma lebeche Gibbula divaricata UNICOR genetic connectivity landscape genomics marine conservation multivariate optimization population genetics seascape genetics

Journal

Molecular ecology
ISSN: 1365-294X
Titre abrégé: Mol Ecol
Pays: England
ID NLM: 9214478

Informations de publication

Date de publication:
10 2021
Historique:
revised: 18 06 2021
received: 11 12 2020
accepted: 23 06 2021
pubmed: 15 7 2021
medline: 21 10 2021
entrez: 14 7 2021
Statut: ppublish

Résumé

Oceanographic features such as currents, waves, temperature and salinity, together with life history traits, control patterns and rates of gene flow and contribute to shaping the population genetic structure of marine organisms. Seascape genetics is an emerging discipline that adopts a spatially explicit approach to examine biotic and abiotic factors that drive gene flow in marine environments. In this study, we examined factors that contribute to genetic differentiation in two coastal Mediterranean gastropods whose geographical ranges overlap but which inhabit different environments. The two species differ in several life history traits and in their dispersal capabilities. Genetic differentiation was relatively low for the trochid species Gibbula divaricata (F

Identifiants

pubmed: 34260775
doi: 10.1111/mec.16080
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

4608-4629

Informations de copyright

© 2021 John Wiley & Sons Ltd.

Références

Ahanchédé, A., Alfaya, J. E. F., Andersen, L. W., Azam, D., Bautista, M. A. M., Besnard, A. L., Bigatti, G., Bouétard, A., Coutellec, M.-A., Ewédjè, E.-E., Fuseya, R., GarcÍa-Jiménez, R., Haratian, M., Hardy, O. J., Holm, L.-E., Hoy, C. W., Koshimizu, E., Loeschcke, V., López-Márquez, V., … Yu, H. (2013). Permanent genetic resources added to molecular ecology resources database 1 August 2012-30 September 2012. Molecular Ecology Resources, 13, 158-159. https://doi.org/10.1111/1755-0998.12035
Airoldi, L., Balata, D., & Beck, M. W. (2008). The gray zone: relationships between habitats loss and marine diversity and their applications in conservation. Journal of Experimental Marine Biology and Ecology, 366, 8-15.
Akaike, H. (1973). Information theory and an extension of the maximum likelihood principle. In: Proceedings 2nd International Symposium on Information Theory (pp. 267-281). Budapest.
Alfaya, J. E. F., López-Márquez, V., García-Jiménez, R., Fernández- Álvarez, F. A., Bigatti, G., & Machordom, A. (2014). Development and characterization of microsatellite loci in the entocommensal Malacobdella arrokeana (Nemertea: Bdellonemertea), from Patagonia (Argentina) and cross-amplification in 34 nemertean species. Conservation Genetics Resources, 6(1), 147-150. https://doi.org/10.1007/s12686-013-0029-z
Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W., & Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research, 25, 3389-3402. https://doi.org/10.1093/nar/25.17.3389
Bahri-Sfar, L., Lemaire, C., Kalthoum, O., Hassine, B., & Bonhomme, F. (2000). Fragmentation of sea bass populations in the western and eastern Mediterranean as revealed by microsatellite polymorphism. Proceedings of the Royal Society B: Biological Sciences, 267(1446), 929-935. https://doi.org/10.1098/rspb.2000.1092
Barale, V., Schiller, C., Tacchi, R., & Marechal, C. (2005). Trends and interactions of physical and bio-geo-chemical features in the Adriatic Sea as derived from satellite observations. Science of the Total Environment, 353, 68-81. https://doi.org/10.1016/j.scitotenv.2005.09.060
Barco, A., Evans, J., Schembri, P. J., Taviani, M., & Oliverio, M. (2013). Testing the applicability of DNA barcoding for Mediterranean species of top-shells (Gastropoda, Trochidae, Gibbula s.l.). Marine Biology Research, 8, 785-793. https://doi.org/10.1080/17451000.2013.765585
Belkhir, K., Borsa, P., Chikhi, L., Raufaste, N., & Bonhomme, F. (2004). GENETIX 4.05. logiciel sous Windows TM pour la génétique des populations. Laboratoire Génome, Populations, Interactions, CNRS UMR 5000, Université de Montpellier II, Montpellier (France).
Bellisario, B., Camisa, F., Abbattista, C., & Cimmaruta, R. (2019). A network approach to identify bioregions in the distribution of Mediterranean amphipods associated with Posidonia oceanica meadows. PeerJ, 7, e6786. https://doi.org/10.7717/peerj.6786
Borsa, P., Blanquer, A., & Berrebi, P. (1997). Genetic structure of the flounders Platichthys flesus and P. stellatus at different geographic scales. Marine Biology, 129, 233-246. https://doi.org/10.1007/s002270050164
Bothwell, H. M., Cushman, S. A., Woolbright, S. A., Hersch-Green, E. I., Evans, L. M., Whitham, T. G., & Allan, G. J. (2017). Conserving threatened riparian ecosystems in the American West: Precipitation gradients and river networks drive genetic connectivity and diversity in a foundation riparian tree (Populus angustifolia). Molecular Ecology, 26, 5114-5132. https://doi.org/10.1111/mec.14281
Brownstein, M. J. (1996). Modulation of non-templated nucleotide addition by Taq DNA polymerase: primer modifications that facilitate genotyping. BioTechniques, 20, 1004-1010. https://doi.org/10.2144/96206st01
Calderón, I., Ortega, N., Duran, S., Becerro, M., Pascual, M., & Turon, X. (2007). Finding the relevant scale: clonality and genetic structure in a marine invertebrate (Crambe crambe, Porifera). Molecular Ecology, 16, 1799-1810. https://doi.org/10.1111/j.1365-294X.2007.03276.x
Calvo, M., Alda, F., Oliverio, M., Templado, J., & Machordom, A. (2015). Surviving the Messinian salinity crisis? Divergence patterns in the genus Dendropoma (Gastropoda: Vermetidae) in the Mediterranean Sea. Molecular Phylogenetics and Evolution, 91, 17-26. https://doi.org/10.1016/j.ympev.2015.05.004
Calvo, M., Templado, J., Oliverio, M., & Machordom, A. (2009). Hidden Mediterranean biodiversity: molecular evidence for a cryptic species complex within the reef building gastropod Dendropoma petraeum (Mollusca: Caenogastropoda). Biological Journal of the Linnean Society, 96, 898-912. https://doi.org/10.1111/j.1095-8312.2008.01167.x
Calvo, M., Templado, J., & Penchaszadeh, P. E. (1998). Reproductive biology of the gregarious Mediterranean vermetid gastropod Dendropoma petraeum. Journal Marine Biological Association of United Kingdom, 78, 525-549. https://doi.org/10.1017/S0025315400041606
Carreras, C., García-Cisneros, A., Wangesnsteen, O. S., Ordóñez, V., Palacín, C., Pascual, M., & Turon, X. (2019). East is East and West is West: population genomics and hierarchical analyses reveal genetic structure and adaptation footprints in the key stone species Paracentrotus lividus (Echinoidea). Diversity and Distributions, 26, 382-398. https://doi.org/10.1111/ddi.13016
Castillo, J. A., Epps, C. W., Davis, A. R., & Cushman, S. A. (2014). Landscape effects on gene flow for a climate-sensitive montane species, the American pika. Molecular Ecology, 23, 843-856. https://doi.org/10.1111/mec.12650
Catalano, K. A., Dedrick, A., Stuart, M. R., Puritz, J. B., Montes, H. R., & Pinsky, M. L. (2020). Quantifying dispersal variability among nearshore marine populations. Molecular Ecology, 30(10), 2366-2377. https://doi.org/10.1111/mec.15732
Chemello, R. (2009). Le biocostruzioni marine in Mediterraneo. Lo stato delle conoscenze sui reef a Vermeti. Biologia Marina Mediterranea, 16, 2-18.
Chemello, R., Giacalone, A., La Marca, E. C., Templado, J., & Milazzo, M. (2014). Distribution and conservation needs of a neglected ecosystem: the Mediterranean vermetid reef. 2nd Mediterranean Symposium on the conservation of Coralligenous & other Calcareous Bio-Concretions, Portorož, Slovenia, 29-30 October 2014. Proceedings (pp. 203-204). Tunis.
Chemello, R., & Silenzi, S. (2011). Vermetid reefs in the Mediterranean Sea as archives of sea-level and surface temperature changes. Chemical Ecology, 27, 121-127. https://doi.org/10.1080/02757540.2011.554405
Chukhchin, V. D. (1960). Pelagic larvae of Gastropod mollusks of the Black Sea. In P. Chanley, & R. Robertson (Eds.), Akademiia Nauk SSSR, Trudy Sevastopol’ skoi Biologicheskoi Stantsii, 13(21) (pp. 92-113). Trans. E. C. Wells. Virginia Institute of Marine Science Gloucester Point.
Coll, M., Piroddi, C., Steenbeek, J., Kaschner, K., Ben Rais Lasram, F., Aguzzi, J., Ballesteros, E., Bianchi, C. N., Corbera, J., Dailianis, T., Danovaro, R., Estrada, M., Froglia, C., Galil, B. S., Gasol, J. M., Gertwagen, R., Gil, J., Guilhaumon, F., Kesner-Reyes, K., … Voultsiadou, E. (2010). The Biodiversity of the Mediterranean Sea: Estimates, Patterns, and Threats. PLoS One, 5(8), e11842. https://doi.org/10.1371/journal.pone.0011842
Courchamp, F., Berec, L., & Gascoigne, J. (2008). Allee effects in Ecology and Conservation. Oxford University Press.
Cowen, R. K., & Sponaugle, S. (2009). Larval dispersal and marine population connectivity. Annual Review of Marine Science, 1, 443-466. https://doi.org/10.1146/annurev.marine.010908.163757
Cushman, S. A., Elliot, N. B., Bauer, D., Kesch, K., Bahaa-el-din, L., Bothwell, H., Flyman, M., Mtare, G., Macdonald, D. W., & Loveridge, A. J. (2018). Prioritizing core areas, corridors and conflict hotspots for lion conservation in southern Africa. PLoS One, 13(7), e0196213. https://doi.org/10.1371/journal.pone.0196213
Cushman, S. A., Landguth, E. L., & Flather, C. H. (2013b). Evaluating population connectivity for species of conservation concern in the American Great Plains. Biodiversity and Conservation, 22, 2583-2605. https://doi.org/10.1007/s10531-013-0541-1
Cushman, S. A., McKelvey, K. S., Hayden, J., & Schwartz, M. K. (2006). Gene flow in complex landscapes: Testing multiple hypotheses with causal modelling. American Naturalist, 168, 486-499. https://doi.org/10.1086/506976
Cushman, S. A., Wasserman, T. N., Landguth, E. L., & Shirk, A. J. (2013a). Re-evaluating causal modelling with Mantel tests in landscape genetics. Diversity, 5, 51-72. https://doi.org/10.3390/d5010051
Do, C., Waples, R. S., Peel, D., Macbeth, G. M., Tillett, B. J., & Ovenden, J. R. (2014). NeEstimator V2: re-implementation of software for the estimation of contemporary effective population size (Ne) from genetic data. Molecular Ecology Resources., 14, 209-214.
Duarte, C. M., Agustí, S., Kennedy, H., & Vaqué, D. (1999). The Mediterranean climate as a template for Mediterranean marine ecosystems: the example of the northeast Spain littoral. Progress in Oceanography, 44, 245-270. https://doi.org/10.1016/S0079-6611(99)00028-2
Dulvy, N. K., Sadovy, Y., & Reynolds, J. D. (2003). Extinction vulnerability in marine populations. Fish and Fisheries, 4, 25-64. https://doi.org/10.1046/j.1467-2979.2003.00105.x
Dunning, J. B., Danielson, B. J., & Pulliam, H. R. (1992). Ecological processes that affect populations in complex landscapes. Oikos, 65, 169-175. https://doi.org/10.2307/3544901
Earl, D. A., & vonHoldt, B. M. (2012). STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conservation Genetics Resources, 42, 359-361. https://doi.org/10.1007/s12686-011-9548-7
Evanno, G., Regnaut, S., & Goudet, J. (2005). Detecting the number of clusters of individuals using the software structure: a simulation study. Molecular Ecology, 14, 2611-2620. https://doi.org/10.1111/j.1365-294X.2005.02553.x
Excoffier, L., Laval, G., & Schneider, S. (2005). ARLEQUIN (version 3.0): An integrated software package for population genetics data analysis. Evolutionary Bioinformatics, 1, 47-50. https://doi.org/10.1177/117693430500100003
Ferentinos, G., & Kastanos, N. (1988). Water circulation patterns in the Otranto Straits. eastern Mediterranean. Continental Shelf Research, 8, 1025-1041. https://doi.org/10.1016/0278-4343(88)90037-4
Fernández, V., Dietrich, D. E., Haney, R. L., & Tintoré, J. (2005). Mesoscale, seasonal and interannual variability in the Mediterranean Sea using a numerical ocean model. Progress in Oceanography, 66, 321-340. https://doi.org/10.1016/j.pocean.2004.07.010
Folmer, O., Black, M., Hoeh, W., Lutz, R., & Vrijenhoek, R. (1994). DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology, 3, 294-299.
Fordyce, A. J., Ainsworth, T. D., Heron, S. F., & Leggat, W. (2019). Marine heatwave hotspots in coral reef environments: physical drivers, ecophysiological outcomes and impact upon structural complexity. Frontiers in Marine Science, 6, 498. https://doi.org/10.3389/fmars.2019.0
Galarza, J. A., Turner, G. F., Macpherson, E., & Rico, C. (2009). Patterns of genetic differentiation between two cooccurring demersal species: the red mullet (Mullus barbatus) and the striped red mullet (Mullus surmuletus). Canadian Journal of Fisheries and Aquatic Sciences, 66, 1478-1490. https://doi.org/10.1139/F09-098
Galil, B. S. (2013). Going going gone: the loss of a reef-building gastropod (Mollusca: Gastropoda: Vermetidae) in the Mediterranean Sea. Zoology of the Middle East, 59(2), 179-182. https://doi.org/10.1080/09397140.2013.810885
Gissi, E., Fraschetti, S., & Micheli, F. (2019). Incorporating change in marine spatial planning: A review. Environmental Science and Policy, 92, 191-200. https://doi.org/10.1016/j.envsci.2018.12.002
Goslee, S. C., & Urban, D. L. (2007). The ecodist package for dissimilarity-based analysis of ecological data. Journal of Statistical Software, 22, 1-19. https://doi.org/10.18637/jss.v022.i07
Halpern, B. (2003). The impact of marine reserves: Do reserves work and does reserve size matter? Ecological Applications, 13(sp. 1),117-137.
Harrison, H. B., Bode, M., Willamson, D. H., Berumen, M. L., & Jones, G. P. (2020). A connectivity portfolio effect stabilizes marine reserve performance. Proceedings of the National Academy of Sciences, 117(41), 25595-25600. https://doi.org/10.1073/pnas.1920580117
Kaszta, Z., Cushman, S. A., & Macdonald, D. W. (2020). Prioritizing habitat core areas and corridos for a large carnivore across its range. Animal Conservartion, 23, 607-616. https://doi.org/10.1111/acv12575
Kopelman, N. M., Mayze, J., Jakobsson, M., Rosenberg, N. A., & Mayrose, I. (2015). Clumpak: a program for identifying clustering modes and packaging population structure inferences across K. Molecular Ecology Resources, 15, 1179-1191. https://doi.org/10.1111/1755-0998.12387
Landguth, E. L., Hand, B. K., Glassy, J. M., Cushman, S. A., & Sawaya, M. (2012). UNICOR: A species connectivity and corridor network simulator. Ecography, 35, 9-14. https://doi.org/10.1111/j.1600-0587.2011.07149.x
Landguth, E. L., Holden, Z. A., Mahalovich, M. F., & Cushman, S. A. (2017). Using landscape genetics simulations for planting blister rust resistant whitebark pine in the US Northern Rocky Mountains. Frontiers in Genetics, 8, 9. https://doi.org/10.3389/fgene.2017.00009
Lejeusne, C., Chevaldonné, P., Pergent-Martini, C., Boudouresque, C. F., & Pérez, T. (2010). Climate change effects on a miniature ocean: The highly diverse, highly impacted Mediterranean Sea. Trends in Ecology & Evolution, 25, 250-260. https://doi.org/10.1016/j.tree.2009.10.009
Li, Y.-L., & Liu, J.-X. (2017). StructureSelector: A web-based software to select and visualize the optimal number of clusters using multiple methods. Molecular Ecology Resources, 18, 176-177. https://doi.org/10.1111/1755-0998.12719
López-Márquez, V., Cushman, S. A., Templado, J., Wan, H. Y., Bothwell, H. M., Kruschel, C., Macic, V., & Machordom, A. (2019a). Seascape genetics and connectivity modelling for an endangered Mediterranean coral in the northern Ionian and Adriatic seas. Landscape Ecology, 34, 2649-2668. https://doi.org/10.1007/s10980-019-00911-x
López-Márquez, V., García-Jiménez, R., Calvo, M., Templado, J., & Machordom, A. (2018). Isolation of microsatellite loci for the endangered vermetid gastropod Dendropoma lebeche using Illumina MiSeq next generations sequencing technology. Molecular Biology Reports, 45, 2775-2781. https://doi.org/10.1007/s11033-018-4346-x
López-Márquez, V., García-Jiménez, R., Templado, J., & Machordom, A. (2016). Development and characterization of 26 novel microsatellite loci for the trochid gastropod Gibbula divaricata (Linnaeus, 1758), using Illumina MiSeq next generation sequencing technology. PeerJ, 4, e1789. https://doi.org/10.7717/peerj.1789
López-Márquez, V., Templado, J., Buckley, D., Marino, I., Boscari, E., Micu, D., Zane, L., & Machordom, A. (2019b). Connectivity among populations of the top shell Gibbula divaricata in the Adriatic Sea. Frontiers in Genetics, 10, 1-13. https://doi.org/10.3389/fgene.2019.00177
Lo Brutto, S., Arculeo, M., & Grant, W. S. (2011). Climate change and population genetic structure of marine species. Chemistry and Ecology, 27(2), 107-119. https://doi.org/10.1080/02757540.2010.547486
Lotze, H. K., Coll, M., Magera, A. M., Ward-Paige, C., & Airoldi, L. (2011). Recovery of marine animal populations and ecosystems. Trends in Ecology and Evolution, 26, 595-605. https://doi.org/10.1016/j.tree.2011.07.008
Lowe, C. D., Martin, L. E., Montagnes, D. J. S., & Watts, P. C. (2012). A legacy of contrasting spatial genetic structure on either side of the Atlantic-Mediterranean transition zone in a marine protist. Proceedings of the National Academy of Sciences of the United States of America, 109, 20998-21003. https://doi.org/10.1073/pnas.1214398110
Luttikhuizen, P. C., Campos, J., van Bleijswijk, J., Peijnenburg, K. T. C. A., & van der Veer, H. W. (2008). Phylogeography of the common shrimp, Crangon crangon (L.) across its distribution range. Molecular Phylogenetics and Evolution, 46, 1015-1030. https://doi.org/10.1016/j.ympev.2007.11.011
Machordom, A., Araujo, R., Erpenbeck, D., & Ramos, M. A. (2003). Phylogeograhy and conservation genetics of endangered European Margaritiferidae (Bivalvia: Unionoidea). Biological Journal of the Linnean Society, 78, 235-252. https://doi.org/10.1046/j.1095-8312.2003.00158.x
Manni, F., Guerar, E., & Heyer, E. (2004). Geographic patterns of (genetic, morphologic, linguistic) variation: how barriers can be detected by using Monmonier's algorithm. Human Biology, 76, 173-190. https://doi.org/10.1353/hub.2004.0034
Mantel, N. (1967). Detection of disease clustering and a generalized regression approach. Cancer Research, 27, 209-220.
Marie, A. D., Lejeusne, C., Karapatsiou, E., Cuesta, J. A., Drake, P., Macpherson, E., Bernatchez, L., & Rico, C. (2016). Implications for management and conservation of the population genetic structure of the wedge clam Donax trunculus across two biogeographic boundaries. Scientific Reports, 6, 39152. https://doi.org/10.1038/srep39152
Martel, A., & Chia, F.-S. (1991). Foot-raising behaviour and active participation during the initial phase of post-metamorphic drifting in the gastropod Lacuna spp. Marine Ecology Progress Series, 72, 247-254. https://doi.org/10.3354/meps072247
McCauley, D. J., Pinsky, M. L., Palumbi, S. R., Estes, J. A., Joyce, F. H., & Warner, R. R. (2015). Marine defaunation: animal loss in the global ocean. Science, 347(6219), 1255641. https://doi.org/10.1126/science.1255641
McCook, L. J., Ayling, T., Cappo, M., Choat, H., Evans, R. D., De Freitas, D. M., Heupel, M., Hughes, T. P., Jones, G. P., Mapstone, B., Marsh, H., Mills, M., Molloy, F. J., Pitcher, C. R., Pressey, R. L., Russ, G. R., Sutton, S., Sweatman, H., Tobin, R., … Williamson, D. H. (2010). Adaptive management of the Great Barrier Reef: A globally significant demonstration of the benefits of networks of marine reserves. Proceedings of the National Academy of Sciences, 107(43), 18278-18285. https://doi.org/10.1073/pnas.0909335107
Meirmans, P. G. (2006). Using the AMOVA framework to estimate a standardized genetic differentiation measure. Evolution, 60, 2399-2402. https://doi.org/10.1111/j.0014-3820.2006.tb01874.x
Menna, M., Poulain, P.-M., Ciani, D., Doglioli, A., Notarstefano, N., Gerin, R., & Drago, A. (2019). New insights of the Sicily Channel and southern Tyrrhenian Sea variability. Water, 11, 1355. https://doi.org/10.3390/w11071355
Milazzo, M., Fine, M., La Marca, E. C., Alessi, C., & Chemello, R. (2016). Drawing the line at neglected marine ecosystems: ecology of Vermetid reefs in a changing ocean. In S. Rossi (Ed.), Marine animal forests (pp. 1-23). Springer. https://doi.org/10.1007/978-3-319-17001-5_9-1
Millot, C. (1999). Circulation in the Western Mediterranean Sea. Journal of Marine Systems, 20, 423-442. https://doi.org/10.1016/S0924-7963(98)00078-5
Millot, C., & Taupier-Letage, I. (2005). Circulation in the Mediterranean Sea. In A. Saliot (Ed.), The Mediterranean sea. Handbook of environmental chemistry, Vol. 5K (pp. 29-66). Springer: https://doi.org/10.1007/b107143
Monmonier, M. S. (1973). Maximum-difference barriers: an alternative numerical regionalization method. Geographical Analysis, 5, 245-261. https://doi.org/10.1111/j.1538-4632.1973.tb01011.x
Nicastro, K. R., Zardi, G. I., McQuaid, C. D., Teske, P. R., & Barker, N. P. (2008). Coastal topography drives genetic structure in marine mussels. Marine Ecology Progress Series, 368, 189-195. https://doi.org/10.3354/meps07607
Paetkau, D., Slade, R., Burden, M., & Estoup, A. (2004). Genetic assignment methods for the direct, real-time estimation of migration rate using assignment methods: a simulation-based exploration of accuracy and power. Molecular Ecology, 13, 55-65. https://doi.org/10.1046/j.1365-294X.2004.02008.x
Palero, F., Abelló, P., Macpherson, E., Gristina, M., & Pascual, M. (2008). Phylogeography of the European spiny lobster (Palinurus elephas): Influence of current oceanographical features and historical processes. Molecular Phylogenetics and Evolution, 48, 708-717. https://doi.org/10.1016/j.ympev.2008.04.022
Pascual, M., Rives, B., Schunter, C., & Macpherson, E. (2017). Impact of life history traits on gene flow: A multispecies systematic review across oceanographic barriers in the Mediterranean Sea. PLoS One, 12(5), e0176419. https://doi.org/10.1371/journal.pone.0176419
Patarnello, T., Volckaert, F., & Castilho, R. (2007). Pillars of Hercules: is the Atlantic-Mediterranean transition a phylogeographical break? Molecular Ecology, 16, 4426-4444. https://doi.org/10.1111/j.1365-294X.2007.03477.x
Peakal, R., & Smouse, P. E. (2006). GENEALEX 6: Genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes, 6, 288-295. https://doi.org/10.1111/j.1471-8286.2005.01155.x
Pérez-Ruzafa, Á., González-Wangümert, M., Lenfant, P., Marcos, C., & García-Charton, J. A. (2006). Effects of fishing protection on the genetic structure of fish populations. Biological Conservation, 129, 244-255. https://doi.org/10.1016/j.biocon.2005.10.040
Peterman, W. E. (2018). ResistanceGA: An R package for the optimization of resistance surfaces using genetic algorithms. Methods in Ecology and Evolution, 9, 1638-1647. https://doi.org/10.1111/2041-210X.12984
Piry, S., Alapetite, A., Cornuet, J. M., Paetkau, D., Baudouin, L., & Estoup, A. (2004). GENECLASS2: a software for genetic assignment and first-generation migrant detection. Journal of Heredity, 95, 536-539. https://doi.org/10.1093/jhered/esh074
Pritchard, J. K., Stephens, M., & Donnelly, P. (2000). Inference of population structure using multilocus genotype data. Genetics, 155, 945-959. https://doi.org/10.1093/genetics/155.2.945
Przeslawski, R., Ahyong, S., Byrne, M., Wörheide, G., & Hutchings, P. (2008). Beyond coral and fish: the effects of climate change on noncoral benthic invertebrates of tropical reefs. Global Change Biology, 14, 2773-2795. https://doi.org/10.1111/j.1365-2486.2008.01693.x
Puechmaille, S. J. (2016). The program STRUCTURE does not reliably recover the correct population structure when sampling is uneven: subsampling and new estimators alleviate the problem. Molecular Ecology Resources, 16, 608-627. https://doi.org/10.1111/1755-0998.12512
Rannala, B., & Mountain, J. L. (1997). Detecting immigration by using multilocus genotypes. Proceedings of the National Academy of Sciences of the United States of America, 94, 9197-9201. https://doi.org/10.1073/pnas.94.17.9197
Raymond, M., & Rousset, F. (1995). GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. Journal of Heredity, 86, 248-249. https://doi.org/10.1093/oxfordjournals.jhered.a111573
Rice, W. R. (1989). Analyzing tables of statistical tests. Evolution, 43, 223-225. https://doi.org/10.1111/j.1558-5646.1989.tb04220.x
Riesgo, A., Taobada, S., Pérez-Portela, R., Melis, P., Xavier, J. R., Blasco, G., & López-Legentil, S. (2019). Genetic diversity, connectivity and gene flow along the distribution of the emblematic Atlanto-Mediterranean sponge Petrosia ficiformis (Haplosclerida, Demospongiae). BioMed Central Evolutionary Biology, 19, 24. https://doi.org/10.1186/s12862-018-1343-6
Rindi, F., Pasella, M. N., Lee, M.-F.- E., & Verbruggen, H. (2020). Phylogeography of the Mediterranean green seaweed Halimeda tuna (Ulvophyceae, Chlorophyta). Journal of Phycology, 56, 1109-1113. https://doi.org/10.1111/jpy.13006
Rio, M. H., Poulain, P. M., Pascual, A., Mauri, E., Larnicol, G., & Santoleri, R. (2007). A mean dynamic topography of the Mediterranean Sea computed from altimetric data, in-situ measurements and a general circulation model. Journal of Marine Systems, 65, 484-508. https://doi.org/10.1016/j.jmarsys.2005.02
Ruiz, S., Pascual, A., Garau, B., Faugère, Y., Alvarez, A., & Tintoré, J. (2009). Mesoscale dynamics of the Balearic Front, integrating glider, ship and satellite data. Journal of Marine Systems, 78, S3-S16. https://doi.org/10.1016/j.jmarsys.2009.01.007
Sala, E., & Knowlton, N. (2006). Global marine biodiversity trends. Annual Review of Environmental Resources, 31, 93-122. https://doi.org/10.1146/annurev.energy.31.020105.100235
Sale, P. F., Cowen, R. K., Danilovicz, B. S., Jones, G. P., Kritzer, J. P., Lindeman, K. C., Planes, S., Polunin, N., Russ, G., & Sadovy, Y. (2005). Critical science gaps impede use of no-take fishery reserves. Trends in Ecology and Evolution, 20(2), 74-80. https://doi.org/10.1016/j.tree.2004.11.007
Selkoe, K. A., D’Aloia, C. C., Crandall, E. D., Iacchei, M., Liggins, L., Puritz, J. B., von der Heyden, S., & Toonen, R. J. (2016). A decade of seascape genetics: contributions to basic and applied marine connectivity. Marine Ecology Progress Series, 554, 1-19. https://doi.org/10.3354/meps11792
Selkoe, K. A., Scribner, K. T., & Galindo, H. M. (2015). Waterscape genetics-applications of landscape genetics to rivers, lakes, and seas. In N. Balkenhol, S. Cushman, A. Storfer, & L. Waits (Eds.), Landscape genetics: concepts, methods, applications (pp. 220-246). John Wiley & Sons.
Shirk, A. J., Cushman, S. A., Waring, K. M., Wehenkel, C. A., Leal-Sáenz, A., Toney, C., & Lopez-Sanchez, C. A. (2018). Southwestern white pine (Pinus strobiformis) species distribution models project a large range shift and contraction due to regional climatic changes. Forest Ecology and Management, 411, 176-186. https://doi.org/10.1016/j.foreco.2018.01.025
Shirk, A. J., Landguth, E. L., & Cushman, S. A. (2017). A comparision of regression methods for model selection in individual-based landscape analysis. Molecular Ecology Resources, 18, 55-67. https://doi.org/10.1111/1755-0998.12709
Shirk, A. J., Wallin, D. O., Cushman, S. A., Rice, C. G., & Warheit, K. I. (2010). Inferring landscape effects on gene flow: A new model selection framework. Molecular Ecology, 19, 3603-3619. https://doi.org/10.1111/j.1365-294X.2010.04745.x
Templado, J. (2011). Familia Trochidae. In S. Gofas, D. Moreno, & C. Salas (Eds.), Moluscos marinos de Andalucía (pp. 104-117). Universidad de Málaga.
Templado, J. (2014). Future trends of Mediterranean biodiversity. In S. Goffredo, & Z. Dubinsky (Eds.), The Mediterranean Sea. Its history and present challenges (479-498). Springer.
Templado, J., Calvo, M., Luque, A. A., Garvía, A., Maldonado, M., & Moro, L. (2004). Guía de los invertebrados y peces marinos españoles protegidos por la legislación nacional e internacional. Ministerio de Medio Ambiente, Serie Técnica.
Templado, J., Richter, A., & Calvo, M. (2016). Reef building Mediterranean vermetid gastropods: disentangling the Dendropoma petraeum species complex. Mediterranean Marine Science, 17(1), 13-31. https://doi.org/10.12681/mms.1333
Tintoré, J., La Violette, P. E., Blade, I., & Cruzado, A. (1988). A study of an intense density front in the eastern Alboran Sea: The Almeria-Oran Front. Journal of Physical Oceanography, 18, 1384-1397. https://doi.org/10.1175/1520-0485(1988)018<1384:ASOAID>2.0.CO;2
Treml, E. A., Halpin, P. N., Urban, D. L., & Pratson, L. F. (2008). Modeling population connectivity by ocean currents, a graph-theoretic approach for marine conservation. Landscape Ecology, 23, 19-36. https://doi.org/10.1007/s10980-007-9138-y
Van Oosterhout, C., Hutchinson, W. F., Wills, D. P. M., & Shipley, P. (2004). MICROCHECKER: software for identifying and correcting genotyping errors in microsatellite data. Molecular Ecology Notes, 4, 535-538. https://doi.org/10.1111/j.1471-8286.2004.00684.x
Vartia, S., Collins, P. C., Cross, T. F., Fitzgerald, R. D., Gauthier, D. T., McGinnity, P., Mirimim, L., & Carlsson, J. (2014). Multiplexing with three-primer PCR for rapid and economical microsatellite validation. Hereditas, 151, 43-54. https://doi.org/10.1111/hrd2.00044
Waples, R. S., & Do, C. (2008). LDNE: a program for estimating effective population size from data on linkage disequilibrium. Molecular Ecology Resources, 8, 753-756.
Yang, J., Cushman, S. A., Yang, J., Yang, M., & Bao, T. (2013). Effects of climatic gradients on genetic differentiation of Caragana on the Ordos Plateau, China. Landscape Ecology, 28, 1729-1741. https://doi.org/10.1007/s10980-013-9913-x

Auteurs

Violeta López-Márquez (V)

Museo Nacional de Ciencias Naturales (MNCN-CSIC), Madrid, Spain.

Samuel A Cushman (SA)

USDA Forest Service Rocky Mountain Research Station, Flagstaff, AZ, USA.

José Templado (J)

Museo Nacional de Ciencias Naturales (MNCN-CSIC), Madrid, Spain.

Ho Yi Wan (HY)

Department of Wildlife, Humboldt State University, Arcata, CA, USA.

Helen M Bothwell (HM)

Research School of Biology, Australian National University, Canberra, ACT, Australia.

Annie Machordom (A)

Museo Nacional de Ciencias Naturales (MNCN-CSIC), Madrid, Spain.

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