Determining soil particle-size distribution from infrared spectra using machine learning predictions: Methodology and modeling.


Journal

PloS one
ISSN: 1932-6203
Titre abrégé: PLoS One
Pays: United States
ID NLM: 101285081

Informations de publication

Date de publication:
2021
Historique:
received: 29 04 2020
accepted: 16 05 2021
entrez: 20 7 2021
pubmed: 21 7 2021
medline: 29 10 2021
Statut: epublish

Résumé

Accuracy of infrared (IR) models to measure soil particle-size distribution (PSD) depends on soil preparation, methodology (sedimentation, laser), settling times and relevant soil features. Compositional soil data may require log ratio (ilr) transformation to avoid numerical biases. Machine learning can relate numerous independent variables that may impact on NIR spectra to assess particle-size distribution. Our objective was to reach high IRS prediction accuracy across a large range of PSD methods and soil properties. A total of 1298 soil samples from eastern Canada were IR-scanned. Spectra were processed by Stochastic Gradient Boosting (SGB) to predict sand, silt, clay and carbon. Slope and intercept of the log-log relationships between settling time and suspension density function (SDF) (R2 = 0.84-0.92) performed similarly to NIR spectra using either ilr-transformed (R2 = 0.81-0.93) or raw percentages (R2 = 0.76-0.94). Settling times of 0.67-min and 2-h were the most accurate for NIR predictions (R2 = 0.49-0.79). The NIR prediction of sand sieving method (R2 = 0.66) was more accurate than sedimentation method(R2 = 0.53). The NIR 2X gain was less accurate (R2 = 0.69-0.92) than 4X (R2 = 0.87-0.95). The MIR (R2 = 0.45-0.80) performed better than NIR (R2 = 0.40-0.71) spectra. Adding soil carbon, reconstituted bulk density, pH, red-green-blue color, oxalate and Mehlich3 extracts returned R2 value of 0.86-0.91 for texture prediction. In addition to slope and intercept of the SDF, 4X gain, method and pre-treatment classes, soil carbon and color appeared to be promising features for routine SGB-processed NIR particle-size analysis. Machine learning methods support cost-effective soil texture NIR analysis.

Identifiants

pubmed: 34283823
doi: 10.1371/journal.pone.0233242
pii: PONE-D-20-12450
pmc: PMC8291647
doi:

Substances chimiques

Soil 0
Carbon 7440-44-0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

e0233242

Commentaires et corrections

Type : ErratumIn

Déclaration de conflit d'intérêts

The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. This does not alter our adherence to PLOS ONE policies on sharing data and materials.

Références

Environ Sci Technol. 2002 Feb 15;36(4):639-45
pubmed: 11878378
PLoS One. 2013 Jun 19;8(6):e66409
pubmed: 23840459
PLoS One. 2017 May 4;12(5):e0176510
pubmed: 28472043
Soil Sci Soc Am J. 2016;80(3):613-622
pubmed: 29657354

Auteurs

Elizabeth Jeanne Parent (EJ)

Department of Soils and Agrifood Engineering, Université Laval, Québec, Canada.

Serge-Étienne Parent (SÉ)

Department of Soils and Agrifood Engineering, Université Laval, Québec, Canada.

Léon Etienne Parent (LE)

Department of Soils and Agrifood Engineering, Université Laval, Québec, Canada.

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Classifications MeSH