PHOTONAI-A Python API for rapid machine learning model development.


Journal

PloS one
ISSN: 1932-6203
Titre abrégé: PLoS One
Pays: United States
ID NLM: 101285081

Informations de publication

Date de publication:
2021
Historique:
received: 30 03 2021
accepted: 20 06 2021
entrez: 21 7 2021
pubmed: 22 7 2021
medline: 9 11 2021
Statut: epublish

Résumé

PHOTONAI is a high-level Python API designed to simplify and accelerate machine learning model development. It functions as a unifying framework allowing the user to easily access and combine algorithms from different toolboxes into custom algorithm sequences. It is especially designed to support the iterative model development process and automates the repetitive training, hyperparameter optimization and evaluation tasks. Importantly, the workflow ensures unbiased performance estimates while still allowing the user to fully customize the machine learning analysis. PHOTONAI extends existing solutions with a novel pipeline implementation supporting more complex data streams, feature combinations, and algorithm selection. Metrics and results can be conveniently visualized using the PHOTONAI Explorer and predictive models are shareable in a standardized format for further external validation or application. A growing add-on ecosystem allows researchers to offer data modality specific algorithms to the community and enhance machine learning in the areas of the life sciences. Its practical utility is demonstrated on an exemplary medical machine learning problem, achieving a state-of-the-art solution in few lines of code. Source code is publicly available on Github, while examples and documentation can be found at www.photon-ai.com.

Identifiants

pubmed: 34288935
doi: 10.1371/journal.pone.0254062
pii: PONE-D-21-10500
pmc: PMC8294542
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

e0254062

Déclaration de conflit d'intérêts

The authors have declared that no competing interests exist.

Références

Front Neuroinform. 2014 Feb 21;8:14
pubmed: 24600388
PLoS One. 2017 Jul 20;12(7):e0181001
pubmed: 28727739
BMC Med Inform Decis Mak. 2020 Feb 3;20(1):16
pubmed: 32013925

Auteurs

Ramona Leenings (R)

Institute for Translational Psychiatry, University of Münster, Münster, Germany.
Faculty of Mathematics and Computer Science, University of Münster, Münster, Germany.

Nils Ralf Winter (NR)

Institute for Translational Psychiatry, University of Münster, Münster, Germany.

Lucas Plagwitz (L)

Institute for Translational Psychiatry, University of Münster, Münster, Germany.

Vincent Holstein (V)

Institute for Translational Psychiatry, University of Münster, Münster, Germany.

Jan Ernsting (J)

Institute for Translational Psychiatry, University of Münster, Münster, Germany.
Faculty of Mathematics and Computer Science, University of Münster, Münster, Germany.

Kelvin Sarink (K)

Institute for Translational Psychiatry, University of Münster, Münster, Germany.

Lukas Fisch (L)

Institute for Translational Psychiatry, University of Münster, Münster, Germany.

Jakob Steenweg (J)

Institute for Translational Psychiatry, University of Münster, Münster, Germany.

Leon Kleine-Vennekate (L)

Institute for Translational Psychiatry, University of Münster, Münster, Germany.

Julian Gebker (J)

Institute for Translational Psychiatry, University of Münster, Münster, Germany.

Daniel Emden (D)

Institute for Translational Psychiatry, University of Münster, Münster, Germany.

Dominik Grotegerd (D)

Institute for Translational Psychiatry, University of Münster, Münster, Germany.

Nils Opel (N)

Institute for Translational Psychiatry, University of Münster, Münster, Germany.

Benjamin Risse (B)

Faculty of Mathematics and Computer Science, University of Münster, Münster, Germany.

Xiaoyi Jiang (X)

Faculty of Mathematics and Computer Science, University of Münster, Münster, Germany.

Udo Dannlowski (U)

Institute for Translational Psychiatry, University of Münster, Münster, Germany.

Tim Hahn (T)

Institute for Translational Psychiatry, University of Münster, Münster, Germany.

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Classifications MeSH