The avian W chromosome is a refugium for endogenous retroviruses with likely effects on female-biased mutational load and genetic incompatibilities.
Haldane's rule
W chromosome
endogenous retrovirus
sex chromosome
transcriptome
transposable element
Journal
Philosophical transactions of the Royal Society of London. Series B, Biological sciences
ISSN: 1471-2970
Titre abrégé: Philos Trans R Soc Lond B Biol Sci
Pays: England
ID NLM: 7503623
Informations de publication
Date de publication:
13 09 2021
13 09 2021
Historique:
entrez:
26
7
2021
pubmed:
27
7
2021
medline:
3
11
2021
Statut:
ppublish
Résumé
It is a broadly observed pattern that the non-recombining regions of sex-limited chromosomes (Y and W) accumulate more repeats than the rest of the genome, even in species like birds with a low genome-wide repeat content. Here, we show that in birds with highly heteromorphic sex chromosomes, the W chromosome has a transposable element (TE) density of greater than 55% compared to the genome-wide density of less than 10%, and contains over half of all full-length (thus potentially active) endogenous retroviruses (ERVs) of the entire genome. Using RNA-seq and protein mass spectrometry data, we were able to detect signatures of female-specific ERV expression. We hypothesize that the avian W chromosome acts as a refugium for active ERVs, probably leading to female-biased mutational load that may influence female physiology similar to the 'toxic-Y' effect in
Identifiants
pubmed: 34304594
doi: 10.1098/rstb.2020.0186
pmc: PMC8310711
doi:
Banques de données
figshare
['10.6084/m9.figshare.c.5450746']
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
20200186Références
Science. 2019 Apr 5;364(6435):74-78
pubmed: 30948549
Science. 2014 Dec 12;346(6215):1311-20
pubmed: 25504712
Nat Commun. 2015 Jun 04;6:7330
pubmed: 26040272
Nucleic Acids Res. 2019 Jan 8;47(D1):D427-D432
pubmed: 30357350
Mol Ecol. 2018 Jan;27(1):99-111
pubmed: 29171119
Lancet. 2012 Mar 10;379(9819):915-922
pubmed: 22325189
Mob DNA. 2015 Jun 02;6:11
pubmed: 26045719
Nat Rev Genet. 2013 Feb;14(2):113-24
pubmed: 23329112
Ann N Y Acad Sci. 2017 Feb;1389(1):164-185
pubmed: 27997700
Nat Commun. 2020 Nov 2;11(1):5537
pubmed: 33139741
BMC Genomics. 2019 Jan 5;20(1):4
pubmed: 30611188
PLoS Genet. 2020 Jul 16;16(7):e1008872
pubmed: 32673310
Proc Biol Sci. 2020 Jun 10;287(1928):20200690
pubmed: 32486979
Nucleic Acids Res. 2009 Nov;37(21):7002-13
pubmed: 19786494
Front Genet. 2018 Nov 16;9:481
pubmed: 30505316
Evolution. 2018 Mar;72(3):568-577
pubmed: 29430636
Genome Res. 2005 Jan;15(1):126-36
pubmed: 15256510
Nat Ecol Evol. 2020 Jun;4(6):853-862
pubmed: 32313175
Nature. 2010 Apr 1;464(7289):757-62
pubmed: 20360741
Proc Natl Acad Sci U S A. 2013 Apr 16;110(16):6453-8
pubmed: 23547111
Genome Biol Evol. 2020 Jun 1;12(6):750-763
pubmed: 32315410
Genetics. 1977 Aug;86(4):813-33
pubmed: 17248751
Biol Sex Differ. 2017 Aug 17;8(1):28
pubmed: 28818098
Proc Natl Acad Sci U S A. 2010 Sep 7;107(36):15826-31
pubmed: 20798037
Science. 2015 Nov 20;350(6263):928-32
pubmed: 26586757
Mol Biol Evol. 2015 Oct;32(10):2716-25
pubmed: 26108680
Genetics. 2010 Sep;186(1):109-18
pubmed: 20551438
Genome Biol. 2014;15(12):550
pubmed: 25516281
Front Plant Sci. 2020 May 20;11:644
pubmed: 32508870
Nat Commun. 2020 Jul 7;11(1):3403
pubmed: 32636372
Ageing Res Rev. 2020 Jan;57:100995
pubmed: 31786372
Trends Genet. 2018 Jul;34(7):492-503
pubmed: 29716744
Nat Commun. 2019 Nov 29;10(1):5468
pubmed: 31784533
Annu Rev Genet. 2018 Nov 23;52:131-157
pubmed: 30476449
Trends Genet. 2020 Jul;36(7):510-522
pubmed: 32448494
PLoS Biol. 2009 Oct;7(10):e1000234
pubmed: 19859525
G3 (Bethesda). 2017 Jan 5;7(1):109-117
pubmed: 27852011
Annu Rev Genet. 2012;46:651-75
pubmed: 23145912
Genome Res. 2021 Mar;31(3):497-511
pubmed: 33408157
PLoS Genet. 2014 Jan;10(1):e1004075
pubmed: 24415954
Trends Genet. 2017 Apr;33(4):266-282
pubmed: 28236503
Genetics. 1925 Mar;10(2):148-78
pubmed: 17246267
Genomics. 2020 Mar;112(2):1660-1673
pubmed: 31669705
Proc Natl Acad Sci U S A. 1998 Apr 14;95(8):4415-8
pubmed: 9539751
Mol Ecol Resour. 2018 Nov;18(6):1188-1195
pubmed: 30035372
Nature. 2021 Apr;592(7856):737-746
pubmed: 33911273
Proc Natl Acad Sci U S A. 2020 Apr 28;117(17):9451-9457
pubmed: 32300014
Proc Natl Acad Sci U S A. 2015 Jan 13;112(2):464-9
pubmed: 25535393
Nucleic Acids Res. 2003 Jan 1;31(1):28-33
pubmed: 12519941
PLoS One. 2012;7(9):e46347
pubmed: 23029488
Trends Genet. 2020 Jul;36(7):474-489
pubmed: 32473745
BMC Bioinformatics. 2008 Jan 14;9:18
pubmed: 18194517
Genome Res. 2021 Jan 21;:
pubmed: 33479023
Nucleic Acids Res. 2007;35(15):4964-76
pubmed: 17636050
Mol Ecol Resour. 2021 Jan;21(1):263-286
pubmed: 32937018
Database (Oxford). 2019 Jan 1;2019:
pubmed: 31210271
Genome Res. 2013 Sep;23(9):1474-85
pubmed: 23800453
Proc Biol Sci. 2007 Dec 22;274(1629):3097-104
pubmed: 17939988
Nucleic Acids Res. 2019 May 7;47(8):e47
pubmed: 30783653
J Genomics. 2014 May 01;2:94-103
pubmed: 25057325
Genes (Basel). 2019 Apr 13;10(4):
pubmed: 31013951
Asian J Androl. 2015 May-Jun;17(3):373-80
pubmed: 25814157
Anim Behav. 1997 Apr;53(Pt 4):853-64
pubmed: 11540408
Evolution. 2019 Mar;73(3):609-620
pubmed: 30675905
Chromosome Res. 2012 Jan;20(1):21-33
pubmed: 22038285
Zoolog Sci. 2016 Feb;33(1):73-7
pubmed: 26853871
Proc Natl Acad Sci U S A. 2000 Dec 19;97(26):14484-7
pubmed: 11106377
J Evol Biol. 2015 Nov;28(11):1940-7
pubmed: 26230387
Nat Protoc. 2016 Dec;11(12):2301-2319
pubmed: 27809316
Bioinformatics. 2013 Jan 1;29(1):15-21
pubmed: 23104886
Vet World. 2016 Jul;9(7):783-91
pubmed: 27536043
Trends Genet. 2017 Nov;33(11):871-881
pubmed: 28935117
J Neuroendocrinol. 2009 Mar;21(4):377-86
pubmed: 19207816
Mol Biol Evol. 2015 Dec;32(12):3064-78
pubmed: 26399483
Nature. 2020 Nov;587(7833):252-257
pubmed: 33177665
PLoS One. 2017 Sep 8;12(9):e0184087
pubmed: 28886064
Biol Lett. 2020 Mar;16(3):20190867
pubmed: 32126186
Genome Biol Evol. 2019 Aug 1;11(8):2376-2390
pubmed: 31329234
Bioessays. 2013 Aug;35(8):717-24
pubmed: 23733656
Sci Adv. 2015 Dec 11;1(11):e1501005
pubmed: 26824065
Proc Natl Acad Sci U S A. 2001 May 8;98(10):5677-82
pubmed: 11320221
PLoS Genet. 2021 Apr 22;17(4):e1009438
pubmed: 33886541
Nature. 2015 Nov 5;527(7576):91-4
pubmed: 26444239
Evolution. 1987 Jul;41(4):911-914
pubmed: 28564364
Genome Res. 2010 Apr;20(4):512-8
pubmed: 20357053
Nucleic Acids Res. 2011 Jan;39(Database issue):D70-4
pubmed: 21036865
Evolution. 2006 Jul;60(7):1372-81
pubmed: 16929654
Mol Biol Evol. 2015 Jul;32(7):1880-9
pubmed: 25788450
Philos Trans R Soc Lond B Biol Sci. 2017 Dec 19;372(1736):
pubmed: 29109221
Curr Opin Genet Dev. 2017 Dec;47:17-23
pubmed: 28830007
Genome Biol Evol. 2020 Dec 6;12(12):2370-2383
pubmed: 33022046
BMC Bioinformatics. 2009 Dec 15;10:421
pubmed: 20003500
Nat Commun. 2016 Jul 04;7:12087
pubmed: 27373494
PLoS Biol. 2014 Jul 01;12(7):e1001899
pubmed: 24983465
J Evol Biol. 2017 Jul;30(7):1400-1408
pubmed: 28510293
Science. 2014 Dec 12;346(6215):1246338
pubmed: 25504727
Genes (Basel). 2018 May 15;9(5):
pubmed: 29762547
Trends Ecol Evol. 2009 Jul;24(7):386-93
pubmed: 19409650
Nat Genet. 2017 Mar;49(3):387-394
pubmed: 28135246
Mol Biol Evol. 2013 Apr;30(4):806-10
pubmed: 23329687
Curr Biol. 2018 May 21;28(10):1620-1627.e5
pubmed: 29731307