Wastewater monitoring as a supplementary surveillance tool for capturing SARS-COV-2 community spread. A case study in two Greek municipalities.

COVID-19 Machine learning RNA RT-PCR SARS-CoV-2 Wastewater-based epidemiology (WBE)

Journal

Environmental research
ISSN: 1096-0953
Titre abrégé: Environ Res
Pays: Netherlands
ID NLM: 0147621

Informations de publication

Date de publication:
09 2021
Historique:
received: 27 02 2021
revised: 16 07 2021
accepted: 16 07 2021
pubmed: 27 7 2021
medline: 7 9 2021
entrez: 26 7 2021
Statut: ppublish

Résumé

A pilot study was conducted from late October 2020 until mid-April 2021, aiming to examine the association between SARS-CoV-2 RNA concentrations in untreated wastewater and recorded COVID-19 cases in two Greek municipalities. A population of Random Forest and Linear Regression Machine Learning models was trained and evaluated incorporating the concentrations of SARS-CoV-2 RNA in 111 wastewater samples collected from the inlets of two Wastewater Treatment Plants, along with physicochemical parameters of the wastewater influent. The model's predictions were adequately associated with the 7-day cumulative cases with the correlation coefficients (after 5-fold cross validation) ranging from 0.754 to 0.960 while the mean relative errors ranged from 30.42% to 59.46%. Our results provide indications that wastewater-based predictions can be applied in diverse settings and in prolonged time periods, although the accuracy of these predictions may be mitigated. Wastewater-based epidemiology can support and strengthen epidemiological surveillance.

Identifiants

pubmed: 34310965
pii: S0013-9351(21)01043-4
doi: 10.1016/j.envres.2021.111749
pmc: PMC8302483
pii:
doi:

Substances chimiques

RNA, Viral 0
Waste Water 0

Types de publication

Letter Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

111749

Informations de copyright

Copyright © 2021 Elsevier Inc. All rights reserved.

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Auteurs

Michalis Koureas (M)

Laboratory of Hygiene and Epidemiology, Faculty of Medicine, University of Thessaly, 22 Papakyriazi str, Larissa, Greece.

Grigoris D Amoutzias (GD)

Bioinformatics Laboratory, Department of Biochemistry and Biotechnology, School of Health Sciences, University of Thessaly, Biopolis, Larissa, 41500, Greece.

Alexandros Vontas (A)

Laboratory of Hygiene and Epidemiology, Faculty of Medicine, University of Thessaly, 22 Papakyriazi str, Larissa, Greece.

Maria Kyritsi (M)

Laboratory of Hygiene and Epidemiology, Faculty of Medicine, University of Thessaly, 22 Papakyriazi str, Larissa, Greece.

Ourania Pinaka (O)

Laboratory of Hygiene and Epidemiology, Faculty of Medicine, University of Thessaly, 22 Papakyriazi str, Larissa, Greece.

Argyrios Papakonstantinou (A)

Municipal Water Supply and Sewerage Company of Larissa (DEYAL), Thessaly, Greece.

Katerina Dadouli (K)

Laboratory of Hygiene and Epidemiology, Faculty of Medicine, University of Thessaly, 22 Papakyriazi str, Larissa, Greece.

Marina Hatzinikou (M)

Laboratory of Hygiene and Epidemiology, Faculty of Medicine, University of Thessaly, 22 Papakyriazi str, Larissa, Greece.

Anastasia Koutsolioutsou (A)

Hellenic National Public Health Organisation, Chimarras 6, 15125, Marousi Attica, Greece.

Varvara A Mouchtouri (VA)

Laboratory of Hygiene and Epidemiology, Faculty of Medicine, University of Thessaly, 22 Papakyriazi str, Larissa, Greece.

Matthaios Speletas (M)

Department of Immunology and Histocompatibility, Faculty of Medicine, University of Thessaly, Larissa, Greece.

Sotirios Tsiodras (S)

Hellenic National Public Health Organisation, Chimarras 6, 15125, Marousi Attica, Greece; Fourth Department of Internal Medicine, National and Kapodistrian University of Athens, School of Medicine, Attikon University Hospital, Athens, Greece.

Christos Hadjichristodoulou (C)

Laboratory of Hygiene and Epidemiology, Faculty of Medicine, University of Thessaly, 22 Papakyriazi str, Larissa, Greece. Electronic address: xhatzi@uth.gr.

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