Innate immunity to prions: anti-prion systems turn a tsunami of prions into a slow drip.


Journal

Current genetics
ISSN: 1432-0983
Titre abrégé: Curr Genet
Pays: United States
ID NLM: 8004904

Informations de publication

Date de publication:
Dec 2021
Historique:
received: 07 06 2021
accepted: 07 07 2021
revised: 06 07 2021
pubmed: 29 7 2021
medline: 24 2 2022
entrez: 28 7 2021
Statut: ppublish

Résumé

The yeast prions (infectious proteins) [URE3] and [PSI+] are essentially non-functional (or even toxic) amyloid forms of Ure2p and Sup35p, whose normal function is in nitrogen catabolite repression and translation termination, respectively. Yeast has an array of systems working in normal cells that largely block infection with prions, block most prion formation, cure most nascent prions and mitigate the toxic effects of those prions that escape the first three types of systems. Here we review recent progress in defining these anti-prion systems, how they work and how they are regulated. Polymorphisms of the prion domains partially block infection with prions. Ribosome-associated chaperones ensure proper folding of nascent proteins, thus reducing [PSI+] prion formation and curing many [PSI+] variants that do form. Btn2p is a sequestering protein which gathers [URE3] amyloid filaments to one place in the cells so that the prion is often lost by progeny cells. Proteasome impairment produces massive overexpression of Btn2p and paralog Cur1p, resulting in [URE3] curing. Inversely, increased proteasome activity, by derepression of proteasome component gene transcription or by 60S ribosomal subunit gene mutation, prevents prion curing by Btn2p or Cur1p. The nonsense-mediated decay proteins (Upf1,2,3) cure many nascent [PSI+] variants by associating with Sup35p directly. Normal levels of the disaggregating chaperone Hsp104 can also cure many [PSI+] prion variants. By keeping the cellular levels of certain inositol polyphosphates / pyrophosphates low, Siw14p cures certain [PSI+] variants. It is hoped that exploration of the yeast innate immunity to prions will lead to discovery of similar systems in humans.

Identifiants

pubmed: 34319422
doi: 10.1007/s00294-021-01203-1
pii: 10.1007/s00294-021-01203-1
doi:

Substances chimiques

Amyloid 0
Amyloidogenic Proteins 0
Fungal Proteins 0
Molecular Chaperones 0
Prions 0

Types de publication

Journal Article Review

Langues

eng

Sous-ensembles de citation

IM

Pagination

833-847

Informations de copyright

© 2021. This is a U.S. government work and not under copyright protection in the U.S.; foreign copyright protection may apply.

Références

Albanese V, Reissmann S, Frydman J (2010) A ribosome-anchored chaperone network that facilitates eukaryotic ribosome biogenesis. J Cell Biol 189:69–81
pubmed: 20368619 pmcid: 2854368
Alper T, Haig DA, Clarke MC (1966) The exceptionally small size of the scrapie agent. Biochem Biophys Res Commun 22:278–284
pubmed: 4957205
Amor AJ, Castanzo DT, Delany SP, Selechnik DM, van Ooy A, Cameron DM (2015) The ribosome-associated complex antagonizes prion formation in yeast. Prion 9:144–164
pubmed: 25739058 pmcid: 4601405
Barbitoff YA, Matveenko AG, Moskalnko SE, Zemlyanko OM, Newnam GP, Patel A, Chernova TA, Chernoff YO, Zhouravleva GA (2017) To CURe or not to CURe? Differential effects of the chaperone sorting factor Cur1 on yeast prions are mediated by the chaperone Sis1. Mol Microbiol 105:242–257
pubmed: 28431189
Bateman DA, Wickner RB (2012) [PSI+] prion transmission barriers protect Saccharomyces cerevisiae from infection: intraspecies ‘species barriers.’ Genetics 190:569–579
pubmed: 22095075 pmcid: 3276615
Bateman D, Wickner RB (2013) The [PSI+] prion exists as a dynamic cloud of variants. Plos Genet 9:e1003257
pubmed: 23382698 pmcid: 3561065
Baudin-Baillieu A, Fernandez-Bellot E, Reine F, Coissac E, Cullin C (2003) Conservation of the prion properties of Ure2p through evolution. Mol Biol Cell 14:3449–3458
pubmed: 12925776 pmcid: 181580
Baxa U, Taylor KL, Wall JS, Simon MN, Cheng N, Wickner RB, Steven A (2003) Architecture of Ure2p prion filaments: the N-terminal domain forms a central core fiber. J Biol Chem 278:43717–43727
pubmed: 12917441
Baxa U, Wickner RB, Steven AC, Anderson D, Marekov L, Yau W-M, Tycko R (2007) Characterization of β-sheet structure in Ure2p1-89 yeast prion fibrils by solid state nuclear magnetic resonance. Biochemistry 46:13149–13162
pubmed: 17953455
Bergstrom CT, Lipsitch M, Levin BR (2000) Natural selection, infectious transfer and the existence conditions for bacterial plasmids. Genetics 155:1505–1519
pubmed: 10924453 pmcid: 1461221
Bezsonov EE, Edskes HE, Wickner RB (2021) Innate immunity to yeast prions: Btn2p and Cur1p curing of the [URE3] prion is prevented by 60S ribosomal protein deficiency or ubiquitin/proteasome system overactivity. Genetics 217(4):iyab013. https://doi.org/10.1093/genetics/iyab013
Bolton DC, McKinley MP, Prusiner SB (1982) Identification of a protein that purifies with the scrapie prion. Science 218:1309–1311
pubmed: 6815801
Brachmann A, Baxa U, Wickner RB (2005) Prion generation in vitro: amyloid of Ure2p is infectious. Embo J 24:3082–3092
pubmed: 16096644 pmcid: 1201353
Chakravarty AK, Smejkal T, Itakura AK, Garcia DM, Jarosz DF (2020) A non-amyloid prion particle that activates a heritable gene expression program. Mol Cell 77:251–265
pubmed: 31757755
Chan JCC, Oyler NA, Yau W-M, Tycko R (2005) Parallel β-sheets and polar zippers in amyloid fibrils formed by residues 10–39 of the yeast prion protein Ure2p. Biochemistry 44:10669–10680
pubmed: 16060675
Chen B, Newnam GP, Chernoff YO (2007) Prion species barrier between the closely related yeast proteins is detected despite coaggregation. Proc Natl Acad Sci USA 104:2791–2796
pubmed: 17296932 pmcid: 1815260
Chen B, Thurber KR, Shewmaker F, Wickner RB, Tycko R (2009) Measurement of amyloid fibril mass-per-length by tilted-beam transmission electron microscopy. Proc Natl Acad Sci USA 106:14339–14344
pubmed: 19706519 pmcid: 2732815
Cheng Z, Mugler CF, Keskin A, Hodapp S, Chan LY-L, Weis K, Mertins P, Regev A, Jovanovic M, Brar GA (2019) Small and large ribosomal subunit deficiencies lead to distinct gene expression signatures that reflect cellular growth rate. Mol Cell 73:36–47
pubmed: 30503772
Chernoff YO, Kiktev DA (2016) Dual role of ribosome-associated chaperones in prion formation and propagation. Curr Genet 62:677–685
pubmed: 26968706
Chernoff YO, Lindquist SL, Ono B-I, Inge-Vechtomov SG, Liebman SW (1995) Role of the chaperone protein Hsp104 in propagation of the yeast prion-like factor [psi
pubmed: 7754373
Chernoff YO, Newnam GP, Kumar J, Allen K, Zink AD (1999) Evidence for a protein mutator in yeast: role of the Hsp70-related chaperone Ssb in formation, stability and toxicity of the [PSI+] prion. Mol Cell Biol 19:8103–8112
pubmed: 10567536 pmcid: 84895
Chernoff YO, Galkin AP, Lewitin E, Chernova TA, Newnam GP, Belenkiy SM (2000) Evolutionary conservation of prion-forming abilities of the yeast Sup35 protein. Molec Microbiol 35:865–876
Collins SR, Douglass A, Vale RD, Weissman JS (2004) Mechanism of prion propagation: amyloid growth occurs by monomer addition. Plos Biol 2:1582–1590
Cooper TG (2002) Transmitting the signal of excess nitrogen in Saccharomyces cerevisiae from the Tor proteins to the GATA factors: connecting the dots. FEMS Microbiol Revs 26:223–238
Cox BS (1965) PSI, a cytoplasmic suppressor of super-suppressor in yeast. Heredity 20:505–521
Cox BS, Tuite MF, McLaughlin CS (1988) The Psi factor of yeast: a problem in inheritance. Yeast 4:159–179
pubmed: 3059716
Cox BS, Ness F, Tuite MF (2003) Analysis of the generation and segregation of propagons: entities that propagate the [PSI+] prion in yeast. Genetics 165:23–33
pubmed: 14504215 pmcid: 1462756
Czaplinski K, Ruiz-Echevarria MJ, Paushkin SV, Han X, Weng Y, Perlick HA, Dietz HC, Ter-Avanesyan MD, Peltz SW (1998) The surveillance complex interacts with the translation release factors to enhance termination and degrade aberrant mRNAs. Genes Dev 12:1665–1677
pubmed: 9620853 pmcid: 316864
de Oliveira GAP, Petronilho EC, Pedrote MM, Marques MA, Vieira T, Cino EA, Silva JL (2020) The status of p53 oligomeric and aggregation states in cancer. Biomolecules 10:548
pmcid: 7226498
Debets AJ, Dalstra HJ, Slakhorst M, Koopmanschap B, Hoekstra RF, Saupe SJ (2012) High natural prevalence of a fungal prion. Proc Natl Acad Sci USA 109:10432–10437
pubmed: 22691498 pmcid: 3387057
DePace AH, Santoso A, Hillner P, Weissman JS (1998) A critical role for amino-terminal glutamine/asparagine repeats in the formation and propagation of a yeast prion. Cell 93:1241–1252
pubmed: 9657156
Dergalev AA, Alexandrovg A, Ivannikov RI, Ter-Avanesyan MD, Kushnirov VV (2019) Yeast Sup35 prion structure: two types, four parts, many variants. Int J Mol Sci 20:2633. https://doi.org/10.3390/ijms20112633
doi: 10.3390/ijms20112633 pmcid: 6600473
Derkatch IL, Chernoff YO, Kushnirov VV, Inge-Vechtomov SG, Liebman SW (1996) Genesis and variability of [PSI] prion factors in Saccharomyces cerevisiae. Genetics 144:1375–1386
pubmed: 8978027 pmcid: 1207691
Derkatch IL, Bradley ME, Zhou P, Chernoff YO, Liebman SW (1997) Genetic and environmental factors affecting the de novo appearance of the [PSI+] prion in Saccharomyces cerevisiae. Genetics 147:507–519
pubmed: 9335589 pmcid: 1208174
Derkatch IL, Bradley ME, Hong JY, Liebman SW (2001) Prions affect the appearance of other prions: the story of [PIN]. Cell 106:171–182
pubmed: 11511345
Diaz-Avalos R, King CY, Wall JS, Simon M, Caspar DLD (2005) Strain-specific morphologies of yeast prion amyloids. Proc Natl Acad Sci USA 102:10165–10170
pubmed: 16006506 pmcid: 1177419
Diringer H, Gelderblom H, Hilmert H, Ozel M, Edelbluth C, Kimberlin RH (1983) Scrapie infectivity, fibrils and low molecular weight protein. Nature 306:476–478
pubmed: 6685822
Doel SM, McCready SJ, Nierras CR, Cox BS (1994) The dominant PNM2
pubmed: 8088511 pmcid: 1206025
Dorweiler JE, Obaoye JO, Oddo MJ, Shilati FM, Scheidemantle GM, Coleman TJ, Reilly JA, Smith GR, Manogaran AL (2020) DMSO-mediated curing of several yeast prion variants involves Hsp104 expression and protein solubilization, and is decreased in several autophagy related (atg) mutants. PLoS ONE 15:e0229796
pubmed: 32134970 pmcid: 7058316
Edmunds DR, Kauffman MJ, Schumaker BA, Lindzey FG, Cook WE, Kreeger TJ, Grogan RG, Cornish TE (2016) Chronic wasting disease drives population decline white-tailed deer. PLoS ONE 11:e0161127
pubmed: 27575545 pmcid: 5004924
Edskes HK, Wickner RB (2002) Conservation of a portion of the S cerevisiae Ure2p prion domain that interacts with the full—length protein. Proc Natl Acad Sci USA 99(Suppl. 4):16384–16391
pubmed: 12177423 pmcid: 139898
Edskes HK, Gray VT, Wickner RB (1999) The [URE3] prion is an aggregated form of Ure2p that can be cured by overexpression of Ure2p fragments. Proc Natl Acad Sci USA 96:1498–1503
pubmed: 9990052 pmcid: 15494
Edskes HE, Mukhamedova M, Edskes BK, Wickner RB (2018) Hermes transposon mutagenesis shows [URE3] prion pathology prevented by a ubiquitin-targeting protein: evidence for carbon/nitrogen assimilation cross-talk and a second function for Ure2p. Genetics 209:789–800
pubmed: 29769283 pmcid: 6028256
Edskes HE, Stroobant EE, DeWilde M, Bezsonov EE, Wickner RB (2021) Proteasome control of [URE3] prion propagation by degradation of anti-prion proteins Cur1 and Btn2 in Saccharomyces cerevisiae. Genetics 218(1):iyab037. https://doi.org/10.1093/genetics/iyab037
Futcher AB, Cox BS (1983) Maintenance of the 2 μm circle plasmid in populations of Saccharomyces cerevisiae. J Bacteriol 154:612–622
pubmed: 6341357 pmcid: 217508
Futcher B, Reid E, Hickey DA (1988) Maintenance of the 2 micron circle plasmid of Saccharomyces cerevisiae by sexual transmission: an example of selfish DNA. Genetics 118:411–415
pubmed: 3284783 pmcid: 1203295
Gallina I, Colding C, Henriksen P, Beli P, Nakamura K, Offman J, Mathiasen DP, Silva S, Hoffmann E, Groth A, Choudhary C, Lisby M (2015) Cmr1/WDR76 defines a nuclear genotoxic stress body linking genome integrity and protein quality control. Nat Commun 6:6533
pubmed: 25817432
Gartenberg MR, Smith JS (2016) The nuts and bolts of transcriptionally silent chromatin in Saccharomyces cerevisiae. Genetics 203:1563–1599
pubmed: 27516616 pmcid: 4981263
Gasch AP, Spellman PT, Kao CM, Carmel-Harel O, Eisen MB, Storz G, Botstein D, Brown PO (2000) Genomic expression programs in the response of yeast cells to environmental changes. Mol Biol Cell 11:4241–4257
pubmed: 11102521 pmcid: 15070
Glover JR, Lindquist S (1998) Hsp104, Hsp70, and Hsp40: a novel chaperone system that rescues previously aggregated proteins. Cell 94:73–82
pubmed: 9674429
Glover JR, Kowal AS, Shirmer EC, Patino MM, Liu J-J, Lindquist S (1997) Self-seeded fibers formed by Sup35, the protein determinant of [PSI+], a heritable prion-like factor of S. cerevisiae. Cell 89:811–819
pubmed: 9182769
Gorkovskiy A, Thurber KR, Tycko R, Wickner RB (2014) Locating folds of the in-register parallel β-sheet of the Sup35p prion domain infectious amyloid. Proc Natl Acad Sci USA 111:E4615–E4622
pubmed: 25313080 pmcid: 4217437
Gorkovskiy A, Reidy M, Masison DC, Wickner RB (2017) Hsp104 at normal levels cures many [PSI+] variants in a process promoted by Sti1p, Hsp90 and Sis1p. Proc Natl Acad Sci USA 114:E4193–E4202
pubmed: 28484020 pmcid: 5448221
Griffith JS (1967) Self-replication and scrapie. Nature 215:1043–1044
pubmed: 4964084
Hallstrom TC, Katzmann DJ, Torres RJ, Sharp WJ, Moye-Rowley WS (1998) Regulation of transcription factor Pdr1p function by an Hsp70 protein in Saccharomyces cerevisiae. Mol Cell Biol 18:1147–1155
pubmed: 9488429 pmcid: 108827
Harper DC, Theos AC, Herman KE, Tenza D, Raposo G, Marks MS (2008) Premelanosome amyloid-like fibrils are composed of only Golgi-processed forms of Pmel17 that have been proteolytically processed in endosomes. J Biol Chem 283:2307–2322
pubmed: 17991747
Harris JM, Nguyen PP, Patel MJ, Sporn ZA, Hines JK (2014) Functional diversification of Hsp40: distinct J-protein functional requirements for two prions allow for chaperone-dependent prion selection. PLOS Genet 10:e41004510
He F, Jacobson A (2015) Nonsense-mediated mRNA decay: degradation of defective transcripts is only part of the story. Ann Rev Genet 49:339–366
pubmed: 26436458
Helsen CW, Glover JR (2012) Insight into molecular basis of curing of [PSI+] prion by overexpression of 104-kDa heat shock protein (Hsp104). J Biol Chem 287:542–556
pubmed: 22081611
Higurashi T, Hines JK, Sahi C, Aron R, Craig EA (2008) Specificity of the J-protein Sis1 in the propagation of 3 yeast prions. Proc Natl Acad Sci USA 105:16596–16601
pubmed: 18955697 pmcid: 2575465
Hosoda N, Kobayashii T, Uchida N, Funakoshi Y, Kikuchi Y, Hoshino S, Katada T (2003) Translation termination factor eRF3 mediates mRNA decay through the regulation of deadenylation. J Biol Chem 278:38287–38291
pubmed: 12923185
Hua Z, Vierstra RD (2011) The cullin-ring ubiquitin-protein ligases. Ann Rev Plant Path 62:299–334
Huang Y-W, Kushnirov NV, King C-Y (2021) Mutable yeast prion variants are stabilized by a defective Hsp104 chaperone. Mol Microbiol 115(4):774–788. https://doi.org/10.1111/mmi.14643
Hung GC, Masison DC (2006) N-terminal domain of yeast Hsp104 chaperone is dispensable for thermotolerance and prion propagation but necessary for curing prions by Hsp104 overexpression. Genetics 173:611–620
pubmed: 16582428 pmcid: 1526498
Iconomidou VA, Hamodrakas SJ (2008) Natural protective amyloids. Curr Protein Pept Sci 9:291–309
pubmed: 18537684
Jain N, Chapman MR (2019) Bacterial functional amyloids: order from disorder. Biochim Biophys Acta Proteins Proteom 1867:954–960
pubmed: 31195143 pmcid: 6661199
Jaunmuktane Z, Mead S, Ellis M, Wadsworth JD, Nicoll AJ, Kenny J, Launchbury F, Linehan J, Richard-Loendt A, Walker AS, Rudge P, Collinge J, Brandner S (2015) Evidence for human transmission of amyloid-β pathology and cerebral amyloid angiopathy. Nature 525:247–250
pubmed: 26354483
Johnston JA, Ward CL, Kopito RR (1999) Aggresomes: a cellular response to misfolded proteins. J Cell Biol 143:1883–1898
Jonkers W, Rep M (2009) Lessons from fungal F-box proteins. Eukaryot Cell 8:677–695
pubmed: 19286981 pmcid: 2681605
Kama R, Robinson M, Gerst JE (2007) Btn2, a Hook1 ortholog and potential Batten disease-related protein, mediates late endosome-Golgi protein sorting in yeast. Mol Cell Biol 27:605–621
pubmed: 17101785
Kanneganti V, Kama R, Gerst JE (2011) Btn3 is a negative regulator of Btn2-mediated endosomal protein trafficking and prion curing in yeast. Mol Biol Cell 22:1648–1663
pubmed: 21441304 pmcid: 3093318
Kelly AC, Shewmaker FP, Kryndushkin D, Wickner RB (2012) Sex, prions and plasmids in yeast. Proc Natl Acad Sci USA 109:E2683–E2690
pubmed: 22949655 pmcid: 3479589
Kiktev DA, Melomed MM, Lu CD, Newnam GP, Chernoff YO (2015) Feedback control of prion formation and propagation by the ribosome-associated chaperone complex. Mol Microbiol 96:621–632
pubmed: 25649498 pmcid: 4452204
Kim S, Kwon S-H, Kam T-I, Panicker N, Karuppagounder SS, Lee S, Lee JH, Kim WR, Kook M, Foss CA, Shen C, Lee H, Kulkami S, Pasricha PJ, Lee G, Pomper MG, Dawson VL, Dawson TM, Ko HS (2019) Transneuronal propagation of pathologic α-synuclein from the gut to the brain models Parkinson’s disease. Neuron 103:627–641
pubmed: 31255487 pmcid: 6706297
King CY (2001) Supporting the structural basis of prion strains: induction and identification of [PSI] variants. J Mol Biol 307:1247–1260
pubmed: 11292339
King C-Y, Diaz-Avalos R (2004) Protein-only transmission of three yeast prion strains. Nature 428:319–323
pubmed: 15029195
King C-Y, Tittmann P, Gross H, Gebert R, Aebi M, Wuthrich K (1997) Prion-inducing domain 2–114 of yeast Sup35 protein transforms in vitro into amyloid-like filaments. Proc Natl Acad Sci USA 94:6618–6622
pubmed: 9192614 pmcid: 21207
Kirkland PA, Reidy M, Masison DC (2011) Functions of yeast Hsp40 chaperone Sis1p dispensable for prion propagation but important for prion curing and protection from prion toxicity. Genetics 188:565–577
pubmed: 21555396 pmcid: 3176549
Koplin A, Preissler S, Ilina Y, Kock M, Scior A, Erhardt M, Deuerling E (2010) A dual function for chaperones SSB-RAC and the NAC nascent polypeptide-associated complex on ribosomes. J Cell Biol 189:57–68
pubmed: 20368618 pmcid: 2854369
Kryndushkin D, Wickner RB (2007) Nucleotide exchange factors for Hsp70s are required for [URE3] prion propagation in Saccharomyces cerevisiae. Mol Biol Cell 18:2149–2154
pubmed: 17392510 pmcid: 1877104
Kryndushkin D, Shewmaker F, Wickner RB (2008) Curing of the [URE3] prion by Btn2p, a Batten disease-related protein. EMBO J 27:2725–2735
pubmed: 18833194 pmcid: 2572181
Kryndushkin D, Ihrke G, Piermartiri TC, Shewmaker F (2012) A yeast model of optineurin proteinopathy reveals a unique aggregation pattern associated with cellular toxicity. Mol Microbiol 86:1531–1547
pubmed: 23078282
Kumar J, Masison DC (2021) Yeast J-protein Sis1 prevents prion toxicity by maintaining prion protein solubility. Genetics Submitted
Kumar N, Gaur D, Gupta A, Puri A, Sharma D (2015) Hsp90-associated immunophilin homolog Cpr7 is required for the mitotic stability of [URE3] prion in Saccharomyces cerevisiae. PLOS Genet 11:e1005567
pubmed: 26473735 pmcid: 4608684
Kumar S, Dine EA, Paddock E, Steinberg DN, Greene LE, Masison DC (2020) Mutations outside the Ure2 amyloid-forming region disrupt [URE3] prion propagation and alter interactions with protein quality control factors. Mol Cell Biol 40:e00294–20
pubmed: 32868289 pmcid: 7556844
Kushnirov VV, Kochneva-Pervukhova NV, Cechenova MB, Frolova NS, Ter-Avanesyan MD (2000a) Prion properties of the Sup35 protein of yeast Pichia methanolica. EMBO J 19:324–331
pubmed: 10654931 pmcid: 305569
Kushnirov VV, Kryndushkin DS, Boguta M, Smirnov VN, Ter-Avanesyan MD (2000b) Chaperones that cure yeast artificial [PSI+] and their prion-specific effects. Curr Biol 10:1443–1446
pubmed: 11102806
Lacroute F (1971) Non-Mendelian mutation allowing ureidosuccinic acid uptake in yeast. J Bacteriol 106:519–522
pubmed: 5573734 pmcid: 285125
Li X, Kandel ER, Derkatch IL (2014) Functional role of Tia1/Pub1 and Sup35 prion domains: directing protein synthesis machinery to the tubulin cytoskeleton. Mol Cell 55:305–318
pubmed: 24981173 pmcid: 4425694
Luke MM, Sutton A, Arndt KT (1991) Characterization of SIS1, a Saccharomyces cerevisiae homolog of bacterial dnaJ proteins. J Cell Biol 114:623–638
pubmed: 1714460
Lum R, Tkach JM, Vierling E, Glover JR (2004) Evidence for an unfolding/threading mechanism for protein disaggregation by Saccharomyces cerevisiae Hsp104. J Biol Chem 279:29139–29146
pubmed: 15128736
Lum R, Niggemann M, Glover JR (2008) Peptide and protein binding in the axial channel of Hsp104. Insights into the mechanism of protein unfolding. J Biol Chem 283:30139–30146
pubmed: 18755692 pmcid: 2662077
Mackay JP, Matthews JM, Winefield RD, Mackay LG, Haverkamp RG, Templeton MD (2001) The hydrophobin EAS is largely unstructured in solution and functions by forming amyloid-like structures. Struct (camb) 9:83–91
Maffucci T, Falasca M (2020) Signalling properties of inositol polyphosphates. Molecules 25:5281. https://doi.org/10.3390/molecules25225281
doi: 10.3390/molecules25225281 pmcid: 7696153
Maldonado-Baez L, Cole NB, Kramer H, Donaldson JG (2013) Microtubule-dependent endosomal sorting of clathrin-independent cargo by Hook1. J Cell Biol 201:233–247
pubmed: 23589492 pmcid: 3628520
Malinovska L, Kroschwald S, Munder MC, Richter D, Alberti S (2012) Molecular chaperones and stress-inducible protein-sorting factors coordinate the spaciotemporal distribution of protein aggregates. Mol Biol Cell 23:3041–3056
pubmed: 22718905 pmcid: 3418301
Masel J, Griswold CK (2009) The strength of selection against the yeast prion [PSI+]. Genetics 181:1057–1063
pubmed: 19153253 pmcid: 2651042
Masison DC, Wickner RB (1995) Prion-inducing domain of yeast Ure2p and protease resistance of Ure2p in prion-containing cells. Science 270:93–95
pubmed: 7569955
Masison DC, Maddelein M-L, Wickner RB (1997) The prion model for [URE3] of yeast: spontaneous generation and requirements for propagation. Proc Natl Acad Sci USA 94:12503–12508
pubmed: 9356479 pmcid: 25018
McGlinchey R, Kryndushkin D, Wickner RB (2011) Suicidal [PSI+] is a lethal yeast prion. Proc Natl Acad Sci USA 108:5337–5341
pubmed: 21402947 pmcid: 3069153
Mead DJ, Gardner DCJ, Oliver SG (1986) The yeast 2 μ plasmid: strategies for the survival of a selfish DNA. Mol Gen Genet 205:417–421
pubmed: 3550381
Mead S, Stumpf MP, Whitfield J, Beck JA, Poulter M, Campbell T, Uphill JB, Goldstein D, Alpers M, Fisher EM, Collinge J (2003) Balancing selection at the prion protein gene consistent with prehistoric kurulike epidemics. Science 300:640–643
pubmed: 12690204
Miller SB, Ho CT, Winkler J, Khokhrina M, Neuner A, Mohamed MY, Guilbride DL, Richter K, Lisby M, Scheibel E, Mogk A, Bukau B (2015) Compartment-specific aggregases direct distinct nuclear and cytoplasmic aggregate deposition. EMBO J 34:778–797
pubmed: 25672362 pmcid: 4369314
Moosavi B, Wongwigkam J, Tuite MF (2010) Hsp70/Hsp90 co-chaperones are required for efficient Hsp104-mediated elimination of the yeast [PSI+] prion but not for prion propagation. Yeast 27:167–179
pubmed: 20014008
Moriyama H, Edskes HK, Wickner RB (2000) [URE3] prion propagation in Saccharomyces cerevisiae: requirement for chaperone Hsp104 and curing by overexpressed chaperone Ydj1p. Mol Cell Biol 20:8916–8922
pubmed: 11073991 pmcid: 86546
Morrissette VA, Rolfes RJ (2020) The intersection between stress responses and inositol pyrophosphates in Saccharomyces cerevisiae. Curr Genet 66:901–910
pubmed: 32322930
Mukherjee A, Morales-Scheihing D, Salvadores N, Moreno-Gonzales I, Gonzales C, Taylor-Presse K, Mendez N, Shahnawaz M, Gaber AO, Sabek OM, Fraga DW, Soto C (2017) Induction of IAPP amyloid deposition and associated diabetic abnormalities by a prion-like mechanism. J Exper Med 214:2591–2610
Nakayashiki T, Kurtzman CP, Edskes HK, Wickner RB (2005) Yeast prions [URE3] and [PSI
pubmed: 16024723 pmcid: 1180808
Navalkar A, Ghosh S, Pandey S, Paul A, Datta D, Maji SK (2020) Prion-like p53 amyloids in cancer. Biochemistry 59:146–155
pubmed: 31603660
Nelson RJ, Ziegilhoffer T, Nicolet C, Werner-Washburne M, Craig EA (1992) The translation machinery and 70 kDal heat shock protein cooperate in protein synthesis. Cell 71:97–105
pubmed: 1394434
Ness F, Cox B, Wonwigkam J, Naeimi WR, Tuite MF (2017) Over-expression of the molecular chaperone Hsp104 in Saccharomyces cerevisiae results in the malpartition of [PSI+] propagons. Mol Microbiol 104:125–143
pubmed: 28073182
Newnam GP, Birchmore JL, Chernoff YO (2011) Destabilization and recovery of a yeast prion after mild heat shock. J Mol Biol 408:432–448
pubmed: 21392508 pmcid: 3095851
Ngo S, Gu L, Guo Z (2011) Hierarchical organization in the amyloid core of yeast prion protein Ure2. J Biol Chem 286:29691–29699
pubmed: 21730048 pmcid: 3191010
Ngo S, Chiang V, Guo Z (2012) Quantitative analysis of spin exchange interactions to identify β strand and turn regions in Ure2 prion domain fibrils with site-directed spin labeling. J Struct Biol 180:374–381
pubmed: 22967940
Ohhashi Y, Yamaguchi Y, Kurahashi H, Kamatari YO, Sugiyama S, Uluca B, Piechatzek T, Komi Y, Shida T, Muller H, Hanashima S, Heise H, Kuwata K, M. T, (2018) Molecular basis for diversification of yeast prion strain conformation. Proc Natl Acad Sci USA 115:2389–2394
pubmed: 29467288 pmcid: 5877990
Oliver EE, Troisi EM, Hines JK (2017) Prion-specific Hsp40 function: the role of the auxilin homolog Swa2. Prion 11:174–185
pubmed: 28574745 pmcid: 5480384
Park YN, Zhou X, Yim YI, Todor H, Ellerbrock R, Reidy M, Eisenberg E, Masison DC, Greene LE (2014) Hsp104 overexpression cures Saccharomyces cerevisiae [PSI+] by causing dissolution of the prion seeds. Eukaryot Cell 13:635–647
pubmed: 24632242 pmcid: 4060481
Park Y, Park J, Hwang HJ, Kim B, Kwon J, ChangLeeKim JJ-BYK (2018) Nonsense-mediated mRNA decay factor UPF1 promotes aggresome formation. Nat Comm 11:3106. https://doi.org/10.1038/s41467-020-16939-6
doi: 10.1038/s41467-020-16939-6
Park S-K, Park S, Pentek C, Liebman SW (2021) Tumor suppressor protein p53 expressed in yeast can remain diffuse, form a prion, or form unstable liquid-like droplets. Science 24:102000
Paushkin SV, Kushnirov VV, Smirnov VN, Ter-Avanesyan MD (1996) Propagation of the yeast prion-like [psi
pubmed: 8670813 pmcid: 450255
Podrabsky JE, Carpenter JF, Hand SC (2001) Survival of water stress in annual fish embryos: dehydration avoidance and egg amyloid fibers. Am J Physiol Regul Integr Comp Physiol 280:R123–R131
pubmed: 11124142
Prusiner SB (1982) Novel proteinaceous infectious particles cause scrapie. Science 216:136–144
pubmed: 6801762
Prusiner SB, Scott M, Foster D, Pan K-M, Groth D, Mirenda C, Torchia M, Yang S-L, Serban D, Carlson GA, Hoppe PC, Westaway D, DeArmond SJ (1990) Transgenic studies implicate interactions between homologous PrP isoforms in scrapie prion replication. Cell 63:673–686
pubmed: 1977523
Puri A, Singh P, Kumar N, Kumar R, Sharma D (2021) Tah1, a key component of R2TP complex that regulates assembly of snoRNP, is involved in de novo generation and maintenance of yeast prion [URE3]. J Mol Biol. https://doi.org/10.1016/j.jmb.2021.166976 (Online ahead of print)
doi: 10.1016/j.jmb.2021.166976 pubmed: 33811921
Reidy M, Masison DC (2010) Sti1 regulation of Hsp70 and Hsp90 is critical for curing of Saccharomyces cerevisiae [PSI+] prions by Hsp104. Mol Cell Biol 30:3542–3552
pubmed: 20479121 pmcid: 2897543
Reidy M, Kumar S, Anderson DE, Masison DC (2018) Dual roles for yeast Sti1/Hop in regulating the Hsp90 chaperone cycle. Genetics 209:1139–1154
pubmed: 29930177 pmcid: 6063237
Resende CG, Outeiro TF, Sands L, Lindquist S, Tuite MF (2003) Prion protein gene polymorphisms in Saccharomyces cerevisiae. Mol Microbiol 49:1005–1017
pubmed: 12890024
Roberts BT, Moriyama H, Wickner RB (2004) [URE3] prion propagation is abolished by a mutation of the primary cytosolic Hsp70 of budding yeast. Yeast 21:107–117
pubmed: 14755636
Sampson TR, Challis C, Jain N, Moiseyenko A, Ladinsky MS, Shastri GG, Thron T, Needham BD, Horvath I, Debelius JW, Janssen S, Knight R (2020) A gut bacterial amyloid promotes α-synuclein aggregation and motor impairment in mice. Elife 9:e53111
pubmed: 32043464 pmcid: 7012599
Santoso A, Chien P, Osherovich LZ, Weissman JS (2000) Molecular basis of a yeast prion species barrier. Cell 100:277–288
pubmed: 10660050
Sarikas A, Hartmann T, Pan ZQ (2011) The cullin protein family. Genome Biol. https://doi.org/10.1186/gb-2011-1112-1184-1220
doi: 10.1186/gb-2011-1112-1184-1220 pubmed: 21554755 pmcid: 3218854
Saupe SJ (2011) The [Het-s] prion of Podospora anserina and its role in heterokaryon incompatibility. Sem Cell Dev Biol 22:460–468
Schlieker C, Tews I, Bukau B, Mogk A (2004) Solubilization of aggregated proteins by ClpB/DnaK relies on the continuous extraction of unfolded polypeptides. FEBS Lett 578:351–356
pubmed: 15589844
Seol JH, Shevchenko A, Shevchenko A, Deshales RJ (2001) Skip1 forms multiple protein complexes, including RAVE, a regulator of V-ATPase assembly. Nat Cell Biol 3:384–391
pubmed: 11283612
Sharma D, Masison DC (2008) Functionally redundant isoforms of a yeast Hsp70 chaperone subfamily have different antiprion effects. Genetics 179:1301–1311
pubmed: 18562668 pmcid: 2475734
Shewmaker F, Wickner RB, Tycko R (2006) Amyloid of the prion domain of Sup35p has an in-register parallel β-sheet structure. Proc Natl Acad Sci USA 103:19754–19759
pubmed: 17170131 pmcid: 1750918
Shewmaker F, Mull L, Nakayashiki T, Masison DC, Wickner RB (2007) Ure2p function is enhanced by its prion domain in Saccharomyces cerevisiae. Genetics 176:1557–1565
pubmed: 17507672 pmcid: 1931552
Son M, Wickner RB (2018) Nonsense-mediated mRNA decay factors cure most [PSI+] prion variants. Proc Natl Acad Sci USA 115:1184–1193 (pii: 201717495. doi: 201717410.201711073/pnas.1717495115)
Son M, Wickner RB (2020) Normal levels of ribosome-associated chaperones cure two groups of [PSI+] variants. Proc Natl Acad Sci USA 117:26298–26306. https://doi.org/10.1073/pnas.2016954117
doi: 10.1073/pnas.2016954117 pubmed: 33020283 pmcid: 7584888
Sondheimer N, Lindquist S (2000) Rnq1: An epigenetic modifier of protein function in yeast. Mol Cell 5:163–172
pubmed: 10678178
Specht S, Miller SBM, Mogk A, Bukau B (2011) Hsp42 is required for sequestration of protein aggregates into deposition sites in Saccharomyces cerevisiae. J Cell Biol 195:617–629
pubmed: 22065637 pmcid: 3257523
Speldewinde SH, Grant CM (2016) Spermidine cures yeast of prions. Microbial Cell 3:46–48
Speldewinde SH, Grant CM (2017) The frequency of yeast [PSI+] prion formation is increased during chronological aging. Microbial Cell 4:127–132
pubmed: 28435839 pmcid: 5376352
Steidle EA, Chong LS, Wu M, Crooke E, Fiedler D, Resnick AC, Rolfes RJ (2016) A novel inositol pyrophosphate phosphatase in Saccharomyces cerevisiae: Siw14 protein selectively cleaves the β-phosphate from 5-diphosphoinositol pentakisphosphate (5PP-IP5). J Biol Chem 291:6772–6783
pubmed: 26828065 pmcid: 4807264
Stewart FM, Levin BR (1977) The population biology of bacterial plasmids: a priori conditions for the existence of conjugationally transmitted factors. Genetics 87:209–228
pubmed: 17248761 pmcid: 1213735
Tanaka M, Chien P, Naber N, Cooke R, Weissman JS (2004) Conformational variations in an infectious protein determine prion strain differences. Nature 428:323–328
pubmed: 15029196
Tanaka M, Collins SR, Toyama BH, Weissman JS (2006) The physical basis of how prion conformations determine strain phenotypes. Nature 442:585–589
pubmed: 16810177
Taylor KL, Cheng N, Williams RW, Steven AC, Wickner RB (1999) Prion domain initiation of amyloid formation in vitro from native Ure2p. Science 283:1339–1343
pubmed: 10037606
Ter-Avanesyan MD, Dagkesamanskaya AR, Kushnirov VV, Smirnov VN (1994) The SUP35 omnipotent suppressor gene is involved in the maintenance of the non-Mendelian determinant [psi+] in the yeast Saccharomyces cerevisiae. Genetics 137:671–676
pubmed: 8088512 pmcid: 1206026
Tessarz P, Mogk A, Bukau B (2008) Substrate threading through the central pore of the Hsp104 chaperone as a common mechanism for protein disaggregation and prion propagation. Mol Microbiol 68:87–97
pubmed: 18312264
Troisi EM, Rockman ME, Nguyen PP, Oliver EE, Hines JK (2015) Swa2, the yeast homolog of mammalian auxilin, is specifically required for the propagation of the prion variant [URE3-1]. Mol Microbiol 97:926–941
pubmed: 26031938 pmcid: 4689296
Tycko R (2014) Physical and structural basis for polymorphism in amyloid fibrils. Protein Sci 23:1528–1539
pubmed: 25179159 pmcid: 4241104
Tycko R, Wickner RB (2013) Molecular structures of amyloid and prion fibrils: consensus vs. controversy. Accounts of Chem Res 46:1487–1496
von Plehwe U, Berndt U, Conz C, Chiabudini M, Fitzke E, Sickmann A, Petersen A, Pfeifer D, Rospert S (2009) The Hsp70 homolog Ssb is essential for glucose sensing via the SNF1 kinase network. Genes Dev 23:2102–2115
Vorberg IM (2019) All the same? The secret life of prion strains within their target cells. Viruses. https://doi.org/10.3390/v11040334
doi: 10.3390/v11040334 pubmed: 30970585 pmcid: 6520713
Wang W, Czaplinski K, Rao Y, Peltz SW (2001) The role of Upf proteins in modulating the translation read-through of nonsense-containing transcripts. EMBO J 20:880–890
pubmed: 11179232 pmcid: 145432
Wang L, Mao X, Ju D, Xie Y (2004) Rpn4 is a physiological substrate of the Ubr2 ubiquitin ligase. J Biol Chem 279:55218–55223
pubmed: 15504724
Wang J, Park G, Lee YK, Nguyen M, San Fung T, Lin TY, Hsu F, Guo Z (2020) Spin label scanning reveals likely locations of beta-strands of the Ure2 prion domain. ACS Omega 5:5984–5993
pubmed: 32226879 pmcid: 7098000
Wickner RB (1994) [URE3] as an altered URE2 protein: evidence for a prion analog in S. cerevisiae. Science 264:566–569
pubmed: 7909170
Wickner RB, Edskes HK, Shewmaker F, Nakayashiki T (2007) Prions of fungi: inherited structures and biological roles. Nat Rev Microbiol 5:611–618
pubmed: 17632572 pmcid: 2376760
Wickner RB, Dyda F, Tycko R (2008) Amyloid of Rnq1p, the basis of the [PIN
pubmed: 18268327 pmcid: 2268149
Wickner RB, Beszonov E, Bateman DA (2014) Normal levels of the antiprion proteins Btn2 and Cur1 cure most newly formed [URE3] prion variants. Proc Natl Aca Sci USA 111:E2711–E2720
Wickner RB, Shewmaker F, Bateman DA, Edskes HE, Gorkovskiy A, Dayani Y, Bezsonov EE (2015) Yeast prions: structure, biology and prion-handling systems. Microbiol Mol Biol Rev 79:1–17
pubmed: 25631286 pmcid: 4402965
Wickner RB, Kelly AC, Bezsonov EE, Edskes HE (2017) Prion propagation is controlled by inositol polyphosphates. Proc Natl Acad Sci USA 114:E8402–E8410
pubmed: 28923943 pmcid: 5635934
Wickner RB, Son M, Edskes BK (2019) Prion variants of yeast are numerous, mutable, and segregate on growth, affecting prion pathogenesis, transmission barriers and sensitivity to anti-prioin systems. Viruses. https://doi.org/10.3390/v11030238
doi: 10.3390/v11030238 pubmed: 30857327 pmcid: 6466074
Winkler J, Tyedmers J, Bukau B, Mogk A (2012) Hsp70 targets Hsp100 chaperones to substrates for protein disaggregation and prion fragmentation. J Cell Biol 198:387–404
pubmed: 22869599 pmcid: 3413357
Wolfe KJ, Ren HY, Trepte P, Cyr DM (2013) The Hsp70/90 cochaperone, Sti1, suppresses proteotoxicity by regulating spatial quality control of amyloid-like proteins. Mol Bio Cell 24:3588–3602
Wong S-H, King C-Y (2015) Amino acid proximities in two Sup35 prion strains revealed by chemical cross-linking. J Biol Chem 290:25062–25071
pubmed: 26265470 pmcid: 4599010
Zhang Y, Sinning I, Rospert S (2017) Two chaperones locked in an embrace: structure and function of the ribosome-associated complex RAC. Nat Struct Biol 24:611–619

Auteurs

Reed B Wickner (RB)

Laboratory of Biochemistry and Genetics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD, 20892-0830, USA. wickner@helix.nih.gov.

Herman K Edskes (HK)

Laboratory of Biochemistry and Genetics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD, 20892-0830, USA.

Moonil Son (M)

Laboratory of Biochemistry and Genetics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD, 20892-0830, USA.

Songsong Wu (S)

Laboratory of Biochemistry and Genetics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD, 20892-0830, USA.

Madaleine Niznikiewicz (M)

Laboratory of Biochemistry and Genetics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD, 20892-0830, USA.

Articles similaires

[Redispensing of expensive oral anticancer medicines: a practical application].

Lisanne N van Merendonk, Kübra Akgöl, Bastiaan Nuijen
1.00
Humans Antineoplastic Agents Administration, Oral Drug Costs Counterfeit Drugs

Smoking Cessation and Incident Cardiovascular Disease.

Jun Hwan Cho, Seung Yong Shin, Hoseob Kim et al.
1.00
Humans Male Smoking Cessation Cardiovascular Diseases Female
Humans United States Aged Cross-Sectional Studies Medicare Part C
1.00
Humans Yoga Low Back Pain Female Male

Classifications MeSH