Genome-wide association study of pancreatic fat: The Multiethnic Cohort Adiposity Phenotype Study.
Adiposity
/ genetics
Aged
Chromosomes, Human, Pair 13
/ genetics
Chromosomes, Human, Pair 6
/ genetics
Diabetes Mellitus, Type 2
/ genetics
Ethnicity
/ genetics
Female
Genome-Wide Association Study
Humans
Magnetic Resonance Imaging
Male
Pancreas
/ diagnostic imaging
Phenotype
Polymorphism, Single Nucleotide
Protein Tyrosine Phosphatases, Non-Receptor
/ genetics
Journal
PloS one
ISSN: 1932-6203
Titre abrégé: PLoS One
Pays: United States
ID NLM: 101285081
Informations de publication
Date de publication:
2021
2021
Historique:
received:
11
03
2021
accepted:
15
06
2021
entrez:
30
7
2021
pubmed:
31
7
2021
medline:
29
10
2021
Statut:
epublish
Résumé
Several studies have found associations between higher pancreatic fat content and adverse health outcomes, such as diabetes and the metabolic syndrome, but investigations into the genetic contributions to pancreatic fat are limited. This genome-wide association study, comprised of 804 participants with MRI-assessed pancreatic fat measurements, was conducted in the ethnically diverse Multiethnic Cohort-Adiposity Phenotype Study (MEC-APS). Two genetic variants reaching genome-wide significance, rs73449607 on chromosome 13q21.2 (Beta = -0.67, P = 4.50x10-8) and rs7996760 on chromosome 6q14 (Beta = -0.90, P = 4.91x10-8) were associated with percent pancreatic fat on the log scale. Rs73449607 was most common in the African American population (13%) and rs79967607 was most common in the European American population (6%). Rs73449607 was also associated with lower risk of type 2 diabetes (OR = 0.95, 95% CI = 0.89-1.00, P = 0.047) in the Population Architecture Genomics and Epidemiology (PAGE) Study and the DIAbetes Genetics Replication and Meta-analysis (DIAGRAM), which included substantial numbers of non-European ancestry participants (53,102 cases and 193,679 controls). Rs73449607 is located in an intergenic region between GSX1 and PLUTO, and rs79967607 is in intron 1 of EPM2A. PLUTO, a lncRNA, regulates transcription of an adjacent gene, PDX1, that controls beta-cell function in the mature pancreas, and EPM2A encodes the protein laforin, which plays a critical role in regulating glycogen production. If validated, these variants may suggest a genetic component for pancreatic fat and a common etiologic link between pancreatic fat and type 2 diabetes.
Identifiants
pubmed: 34329319
doi: 10.1371/journal.pone.0249615
pii: PONE-D-21-08133
pmc: PMC8323875
doi:
Substances chimiques
Protein Tyrosine Phosphatases, Non-Receptor
EC 3.1.3.48
EPM2A protein, human
EC 3.1.3.48.
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Research Support, Non-U.S. Gov't
Research Support, U.S. Gov't, Non-P.H.S.
Langues
eng
Sous-ensembles de citation
IM
Pagination
e0249615Subventions
Organisme : NHGRI NIH HHS
ID : U01 HG007417
Pays : United States
Organisme : NHGRI NIH HHS
ID : U01 HG007419
Pays : United States
Organisme : NHGRI NIH HHS
ID : U01 HG007416
Pays : United States
Organisme : NHGRI NIH HHS
ID : U01 HG007376
Pays : United States
Organisme : NHLBI NIH HHS
ID : HHSN268201200008C
Pays : United States
Organisme : NHLBI NIH HHS
ID : T32 HL129982
Pays : United States
Organisme : NHLBI NIH HHS
ID : R01 HL142825
Pays : United States
Organisme : NCATS NIH HHS
ID : UL1 TR001855
Pays : United States
Organisme : NCI NIH HHS
ID : R01 CA209798
Pays : United States
Organisme : NHLBI NIH HHS
ID : T32 HL007055
Pays : United States
Organisme : NHGRI NIH HHS
ID : R01 HG010297
Pays : United States
Organisme : NHLBI NIH HHS
ID : HHSN268201200008I
Pays : United States
Organisme : NCI NIH HHS
ID : P30 CA071789
Pays : United States
Organisme : NHGRI NIH HHS
ID : U01 HG007397
Pays : United States
Organisme : NCI NIH HHS
ID : U01 CA164973
Pays : United States
Organisme : NCI NIH HHS
ID : P01 CA168530
Pays : United States
Organisme : NHGRI NIH HHS
ID : U01 HG004801
Pays : United States
Organisme : NCATS NIH HHS
ID : UL1 TR000130
Pays : United States
Déclaration de conflit d'intérêts
NO authors have competing interests.
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