Genome-wide association study of pancreatic fat: The Multiethnic Cohort Adiposity Phenotype Study.


Journal

PloS one
ISSN: 1932-6203
Titre abrégé: PLoS One
Pays: United States
ID NLM: 101285081

Informations de publication

Date de publication:
2021
Historique:
received: 11 03 2021
accepted: 15 06 2021
entrez: 30 7 2021
pubmed: 31 7 2021
medline: 29 10 2021
Statut: epublish

Résumé

Several studies have found associations between higher pancreatic fat content and adverse health outcomes, such as diabetes and the metabolic syndrome, but investigations into the genetic contributions to pancreatic fat are limited. This genome-wide association study, comprised of 804 participants with MRI-assessed pancreatic fat measurements, was conducted in the ethnically diverse Multiethnic Cohort-Adiposity Phenotype Study (MEC-APS). Two genetic variants reaching genome-wide significance, rs73449607 on chromosome 13q21.2 (Beta = -0.67, P = 4.50x10-8) and rs7996760 on chromosome 6q14 (Beta = -0.90, P = 4.91x10-8) were associated with percent pancreatic fat on the log scale. Rs73449607 was most common in the African American population (13%) and rs79967607 was most common in the European American population (6%). Rs73449607 was also associated with lower risk of type 2 diabetes (OR = 0.95, 95% CI = 0.89-1.00, P = 0.047) in the Population Architecture Genomics and Epidemiology (PAGE) Study and the DIAbetes Genetics Replication and Meta-analysis (DIAGRAM), which included substantial numbers of non-European ancestry participants (53,102 cases and 193,679 controls). Rs73449607 is located in an intergenic region between GSX1 and PLUTO, and rs79967607 is in intron 1 of EPM2A. PLUTO, a lncRNA, regulates transcription of an adjacent gene, PDX1, that controls beta-cell function in the mature pancreas, and EPM2A encodes the protein laforin, which plays a critical role in regulating glycogen production. If validated, these variants may suggest a genetic component for pancreatic fat and a common etiologic link between pancreatic fat and type 2 diabetes.

Identifiants

pubmed: 34329319
doi: 10.1371/journal.pone.0249615
pii: PONE-D-21-08133
pmc: PMC8323875
doi:

Substances chimiques

Protein Tyrosine Phosphatases, Non-Receptor EC 3.1.3.48
EPM2A protein, human EC 3.1.3.48.

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Pagination

e0249615

Subventions

Organisme : NHGRI NIH HHS
ID : U01 HG007417
Pays : United States
Organisme : NHGRI NIH HHS
ID : U01 HG007419
Pays : United States
Organisme : NHGRI NIH HHS
ID : U01 HG007416
Pays : United States
Organisme : NHGRI NIH HHS
ID : U01 HG007376
Pays : United States
Organisme : NHLBI NIH HHS
ID : HHSN268201200008C
Pays : United States
Organisme : NHLBI NIH HHS
ID : T32 HL129982
Pays : United States
Organisme : NHLBI NIH HHS
ID : R01 HL142825
Pays : United States
Organisme : NCATS NIH HHS
ID : UL1 TR001855
Pays : United States
Organisme : NCI NIH HHS
ID : R01 CA209798
Pays : United States
Organisme : NHLBI NIH HHS
ID : T32 HL007055
Pays : United States
Organisme : NHGRI NIH HHS
ID : R01 HG010297
Pays : United States
Organisme : NHLBI NIH HHS
ID : HHSN268201200008I
Pays : United States
Organisme : NCI NIH HHS
ID : P30 CA071789
Pays : United States
Organisme : NHGRI NIH HHS
ID : U01 HG007397
Pays : United States
Organisme : NCI NIH HHS
ID : U01 CA164973
Pays : United States
Organisme : NCI NIH HHS
ID : P01 CA168530
Pays : United States
Organisme : NHGRI NIH HHS
ID : U01 HG004801
Pays : United States
Organisme : NCATS NIH HHS
ID : UL1 TR000130
Pays : United States

Déclaration de conflit d'intérêts

NO authors have competing interests.

Références

Bone. 2017 Nov;104:101-105
pubmed: 28625918
Genome Med. 2017 Mar 7;9(1):23
pubmed: 28270201
Nat Rev Genet. 2010 Jul;11(7):459-63
pubmed: 20548291
Eur J Epidemiol. 2015 Apr;30(4):317-30
pubmed: 25762173
Nature. 2015 Feb 19;518(7539):317-30
pubmed: 25693563
Dig Dis. 2020;38(2):143-149
pubmed: 31865317
Hum Genet. 2010 Aug;128(2):165-77
pubmed: 20499252
Prog Mol Biol Transl Sci. 2010;97:1-40
pubmed: 21074728
Metabolism. 2017 Apr;69:1-13
pubmed: 28285638
Diabetes Care. 2013 Apr;36(4):1047-55
pubmed: 23520370
PLoS One. 2016 Dec 14;11(12):e0167758
pubmed: 27973554
Cancer Epidemiol Biomarkers Prev. 2020 May;29(5):966-973
pubmed: 32132150
Nat Genet. 2014 Sep;46(9):994-1000
pubmed: 25086665
J Diabetes Investig. 2017 Nov;8(6):735-747
pubmed: 28371475
Br J Radiol. 2019 Jul;92(1099):20180941
pubmed: 30982337
FEBS J. 2013 Jan;280(2):525-37
pubmed: 22364389
Diabetes Care. 2016 Jan;39(1):158-65
pubmed: 26628414
Nature. 2012 Nov 1;491(7422):56-65
pubmed: 23128226
Nat Genet. 2016 Oct;48(10):1279-83
pubmed: 27548312
Mol Cell Biol. 2012 Feb;32(3):652-63
pubmed: 22124153
Nat Genet. 2012 May 13;44(6):659-69
pubmed: 22581228
Epileptic Disord. 2016 Sep 1;18(S2):38-62
pubmed: 27702709
Gastroenterology. 2019 Mar;156(4):966-975.e10
pubmed: 30445012
Clin Chem Lab Med. 2010 Nov;48(11):1629-34
pubmed: 20704534
Peptides. 2018 Feb;100:36-41
pubmed: 29412829
Mol Metab. 2019 Jul;25:1-10
pubmed: 31113756
Br J Radiol. 2018 Sep;91(1089):20180267
pubmed: 29869917
Nat Genet. 2018 Mar;50(3):390-400
pubmed: 29403010
J Endocrinol. 2018 Sep;238(3):R131-R141
pubmed: 29875163
Nutrients. 2018 Mar 22;10(4):
pubmed: 29565831
Nat Rev Gastroenterol Hepatol. 2011 Mar;8(3):169-77
pubmed: 21304475
Science. 2020 Sep 11;369(6509):1318-1330
pubmed: 32913098
Diabetes Care. 2011 Feb;34(2):485-90
pubmed: 21270204
Diabetes Care. 2012 Nov;35(11):2377-83
pubmed: 22968187
Front Endocrinol (Lausanne). 2016 Oct 10;7:129
pubmed: 27777568
Clin Chem. 1972 Jun;18(6):499-502
pubmed: 4337382
Clin Proteomics. 2019 Jul 17;16:31
pubmed: 31346328
Nature. 2012 Sep 6;489(7414):57-74
pubmed: 22955616
Diabetologia. 2011 Oct;54(10):2506-14
pubmed: 21656330
J Hepatol. 2011 Mar;54(3):545-52
pubmed: 21112658
Nucleic Acids Res. 2019 Jan 8;47(D1):D1005-D1012
pubmed: 30445434
Diabetes. 2005 Sep;54(9):2586-95
pubmed: 16123346
Bioinformatics. 2010 Sep 1;26(17):2190-1
pubmed: 20616382
Cell Metab. 2017 Feb 7;25(2):400-411
pubmed: 28041957
N Engl J Med. 2009 Sep 17;361(12):1152-63
pubmed: 19657112
Genome Res. 2002 Jun;12(6):996-1006
pubmed: 12045153
Nature. 2019 Jun;570(7762):514-518
pubmed: 31217584
Nat Genet. 1997 Jan;15(1):106-10
pubmed: 8988180
Am J Epidemiol. 2000 Feb 15;151(4):346-57
pubmed: 10695593
PLoS One. 2019 Dec 2;14(12):e0224921
pubmed: 31790429
Nat Genet. 2006 Aug;38(8):904-9
pubmed: 16862161
Nucleic Acids Res. 2021 Jan 8;49(D1):D480-D489
pubmed: 33237286
Cell Metab. 2014 Feb 4;19(2):259-71
pubmed: 24506867
Diabetologia. 1985 Jul;28(7):412-9
pubmed: 3899825
Cancer Epidemiol Biomarkers Prev. 2020 Sep;29(9):1832-1836
pubmed: 32581113
Hepatol Commun. 2020 Jun 25;4(8):1112-1123
pubmed: 32766472

Auteurs

Samantha A Streicher (SA)

University of Hawaii Cancer Center, University of Hawaii at Mānoa, Honolulu, Hawaii, United States of America.

Unhee Lim (U)

University of Hawaii Cancer Center, University of Hawaii at Mānoa, Honolulu, Hawaii, United States of America.

S Lani Park (SL)

University of Hawaii Cancer Center, University of Hawaii at Mānoa, Honolulu, Hawaii, United States of America.

Yuqing Li (Y)

Department of Epidemiology and Biostatistics, University of California - San Francisco, San Francisco, California, United States of America.

Xin Sheng (X)

Center for Genetic Epidemiology, Department of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles, California, United States of America.

Victor Hom (V)

Center for Genetic Epidemiology, Department of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles, California, United States of America.

Lucy Xia (L)

Center for Genetic Epidemiology, Department of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles, California, United States of America.

Loreall Pooler (L)

Center for Genetic Epidemiology, Department of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles, California, United States of America.

John Shepherd (J)

University of Hawaii Cancer Center, University of Hawaii at Mānoa, Honolulu, Hawaii, United States of America.

Lenora W M Loo (LWM)

University of Hawaii Cancer Center, University of Hawaii at Mānoa, Honolulu, Hawaii, United States of America.

Burcu F Darst (BF)

Center for Genetic Epidemiology, Department of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles, California, United States of America.

Heather M Highland (HM)

Department of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America.

Linda M Polfus (LM)

Center for Genetic Epidemiology, Department of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles, California, United States of America.

David Bogumil (D)

Center for Genetic Epidemiology, Department of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles, California, United States of America.

Thomas Ernst (T)

University of Maryland School of Medicine, Baltimore, Maryland, United States of America.

Steven Buchthal (S)

University of Hawaii Cancer Center, University of Hawaii at Mānoa, Honolulu, Hawaii, United States of America.

Adrian A Franke (AA)

University of Hawaii Cancer Center, University of Hawaii at Mānoa, Honolulu, Hawaii, United States of America.

Veronica Wendy Setiawan (VW)

Center for Genetic Epidemiology, Department of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles, California, United States of America.

Maarit Tiirikainen (M)

University of Hawaii Cancer Center, University of Hawaii at Mānoa, Honolulu, Hawaii, United States of America.

Lynne R Wilkens (LR)

University of Hawaii Cancer Center, University of Hawaii at Mānoa, Honolulu, Hawaii, United States of America.

Christopher A Haiman (CA)

Center for Genetic Epidemiology, Department of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles, California, United States of America.

Daniel O Stram (DO)

Center for Genetic Epidemiology, Department of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles, California, United States of America.

Iona Cheng (I)

Department of Epidemiology and Biostatistics, University of California - San Francisco, San Francisco, California, United States of America.

Loïc Le Marchand (L)

University of Hawaii Cancer Center, University of Hawaii at Mānoa, Honolulu, Hawaii, United States of America.

Articles similaires

[Redispensing of expensive oral anticancer medicines: a practical application].

Lisanne N van Merendonk, Kübra Akgöl, Bastiaan Nuijen
1.00
Humans Antineoplastic Agents Administration, Oral Drug Costs Counterfeit Drugs

Smoking Cessation and Incident Cardiovascular Disease.

Jun Hwan Cho, Seung Yong Shin, Hoseob Kim et al.
1.00
Humans Male Smoking Cessation Cardiovascular Diseases Female
Humans United States Aged Cross-Sectional Studies Medicare Part C
1.00
Humans Yoga Low Back Pain Female Male

Classifications MeSH