Comparative Transcriptome and Weighted Gene Co-expression Network Analysis Identify Key Transcription Factors of

comparative transcriptome analysis drought stress rose transcription factors weighted gene co-expression network analysis

Journal

Frontiers in genetics
ISSN: 1664-8021
Titre abrégé: Front Genet
Pays: Switzerland
ID NLM: 101560621

Informations de publication

Date de publication:
2021
Historique:
received: 02 04 2021
accepted: 24 05 2021
entrez: 2 8 2021
pubmed: 3 8 2021
medline: 3 8 2021
Statut: epublish

Résumé

Rose is one of the most fundamental ornamental crops, but its yield and quality are highly limited by drought. The key transcription factors (TFs) and co-expression networks during rose's response to drought stress and recovery after drought stress are still limited. In this study, the transcriptomes of leaves of 2-year-old cutting seedlings of

Identifiants

pubmed: 34335694
doi: 10.3389/fgene.2021.690264
pmc: PMC8320538
doi:

Types de publication

Journal Article

Langues

eng

Pagination

690264

Informations de copyright

Copyright © 2021 Jia, Feng, Bu, Ji, Lyu and Zhao.

Déclaration de conflit d'intérêts

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Références

Plant Biotechnol J. 2014 Jan;12(1):38-48
pubmed: 24011328
Curr Opin Plant Biol. 2004 Feb;7(1):40-9
pubmed: 14732440
BMC Res Notes. 2011 Nov 28;4:518
pubmed: 22123042
Nat Protoc. 2016 Sep;11(9):1650-67
pubmed: 27560171
PLoS One. 2014 Jan 10;9(1):e84359
pubmed: 24427285
BMC Genomics. 2013 Sep 28;14:662
pubmed: 24074255
Biochem J. 2017 Jul 27;474(16):2641-2661
pubmed: 28751549
Int J Mol Sci. 2017 Apr 17;18(4):
pubmed: 28420173
Sci Rep. 2016 Aug 22;6:31772
pubmed: 27546315
Plant Mol Biol. 2011 Aug;76(6):507-22
pubmed: 21598083
Front Plant Sci. 2016 Jan 18;6:1174
pubmed: 26834757
BMC Genomics. 2021 Jan 28;22(1):90
pubmed: 33509074
Mol Plant. 2018 Jul 2;11(7):970-982
pubmed: 29753021
Plant Physiol. 2012 Dec;160(4):2064-82
pubmed: 23093360
Cell. 2016 Oct 6;167(2):313-324
pubmed: 27716505
Planta. 2010 Apr;231(5):1089-100
pubmed: 20237894
J Plant Physiol. 2018 May - Jun;224-225:30-48
pubmed: 29597066
Front Plant Sci. 2016 Jul 19;7:1075
pubmed: 27486475
Sci Rep. 2018 Sep 28;8(1):14539
pubmed: 30267030
Planta. 2011 Nov;234(5):1007-18
pubmed: 21698458
Plant Signal Behav. 2006 May;1(3):96-104
pubmed: 19521489
Plant Physiol. 2010 May;153(1):145-58
pubmed: 20130099
Plant Physiol Biochem. 2019 Sep;142:312-331
pubmed: 31352248
Plant Physiol Biochem. 2020 May;150:133-139
pubmed: 32142986
BMC Plant Biol. 2019 Aug 27;19(1):377
pubmed: 31455231
Plant Mol Biol. 2014 Jul;85(4-5):333-47
pubmed: 24760474
Genome Biol. 2014;15(12):550
pubmed: 25516281
Plant Cell Rep. 2012 Feb;31(2):349-60
pubmed: 22038370
Planta. 2010 May;231(6):1251-60
pubmed: 20217124
Plant Cell Physiol. 2021 Feb 4;61(12):2153-2166
pubmed: 33165546
Plant J. 2019 Oct;100(2):384-398
pubmed: 31271689
Trends Plant Sci. 2005 Aug;10(8):383-9
pubmed: 16023399
BMC Plant Biol. 2020 Dec 2;20(1):542
pubmed: 33267774
Plant Sci. 2019 Dec;289:110259
pubmed: 31623781
Front Plant Sci. 2016 Jul 14;7:1029
pubmed: 27471513
Plant Cell. 2020 Feb;32(2):295-318
pubmed: 31776234
Plant Cell. 2002;14 Suppl:S165-83
pubmed: 12045276
Nat Genet. 2000 May;25(1):25-9
pubmed: 10802651
Phytochemistry. 2007 Nov-Dec;68(22-24):2831-46
pubmed: 17980895
Plant J. 2014 Feb;77(3):367-79
pubmed: 24274116
Sci Rep. 2019 Dec 18;9(1):19390
pubmed: 31852989
Plant Physiol. 1972 Apr;49(4):658-60
pubmed: 16658022
Comp Biochem Physiol Part D Genomics Proteomics. 2020 Mar;33:100632
pubmed: 31715507
Hortic Res. 2019 Apr 6;6:35
pubmed: 30962933
Plant J. 2001 Aug;27(4):325-33
pubmed: 11532178
Front Genet. 2021 Jan 26;12:645443
pubmed: 33574835
Plant Cell Environ. 2014 Sep;37(9):2051-63
pubmed: 24471423
BMC Plant Biol. 2021 Apr 10;21(1):175
pubmed: 33838660
Nat Biotechnol. 2015 Mar;33(3):290-5
pubmed: 25690850
Plant Physiol. 2007 Jul;144(3):1416-28
pubmed: 17535819
Mol Plant. 2012 Nov;5(6):1375-88
pubmed: 22930734
Plant Cell. 2004 Sep;16(9):2481-98
pubmed: 15319476
Genome Res. 2003 Nov;13(11):2498-504
pubmed: 14597658
Plant Biotechnol J. 2018 Aug;16(8):1514-1528
pubmed: 29406575
BMC Genomics. 2010 Jan 11;11:19
pubmed: 20064227
Plant J. 2009 Aug;59(4):553-64
pubmed: 19392700
Nat Genet. 2018 Jun;50(6):772-777
pubmed: 29713014
Plant Physiol. 2009 Dec;151(4):1918-29
pubmed: 19819982
Sci Rep. 2019 Jan 24;9(1):724
pubmed: 30679609
Bioinformatics. 2010 Jan 1;26(1):139-40
pubmed: 19910308
Plant Cell. 2011 Jun;23(6):2010-32
pubmed: 21642548
Plant Physiol Biochem. 2010 Dec;48(12):909-30
pubmed: 20870416
Plant J. 2006 Feb;45(3):309-19
pubmed: 16412079
Protoplasma. 2017 Jan;254(1):401-408
pubmed: 27040682
BMC Genomics. 2016 Apr 29;17:314
pubmed: 27129471
Annu Rev Plant Biol. 2002;53:247-73
pubmed: 12221975
Plant Mol Biol. 2015 Jul;88(4-5):401-13
pubmed: 25957211
BMC Plant Biol. 2019 Jul 18;19(1):321
pubmed: 31319815
Plant Mol Biol. 2018 Jul;97(4-5):467-468
pubmed: 29946804
Plant Physiol Biochem. 2019 Sep;142:415-428
pubmed: 31416008
Physiol Plant. 2010 Apr;138(4):405-13
pubmed: 20028478
Hortic Res. 2020 May 2;7:74
pubmed: 32377364
Gene. 2018 Jun 20;660:109-119
pubmed: 29604462
Nucleic Acids Res. 1999 Jan 1;27(1):29-34
pubmed: 9847135
Proc Natl Acad Sci U S A. 2014 Feb 11;111(6):2367-72
pubmed: 24477691
Curr Opin Plant Biol. 2006 Apr;9(2):189-95
pubmed: 16483835
Plant Physiol. 1989 Sep;91(1):1-4
pubmed: 16666977
Plant Biotechnol J. 2019 Jul;17(7):1316-1332
pubmed: 30575255
Front Plant Sci. 2013 Oct 09;4:397
pubmed: 24130566
Science. 1997 Jun 20;276(5320):1872-4
pubmed: 9188535
Arabidopsis Book. 2007;5:e0106
pubmed: 22303230
Mol Plant. 2011 Jan;4(1):83-96
pubmed: 20978086
Stat Appl Genet Mol Biol. 2005;4:Article17
pubmed: 16646834
Genes (Basel). 2019 Feb 14;10(2):
pubmed: 30769841
Nat Commun. 2018 Nov 8;9(1):4680
pubmed: 30409967
Mol Plant. 2018 Feb 5;11(2):315-325
pubmed: 29275167
BMC Bioinformatics. 2008 Dec 29;9:559
pubmed: 19114008
Plant Mol Biol. 2017 Sep;95(1-2):181-197
pubmed: 28840447
Dev Cell. 2017 Apr 10;41(1):33-46.e7
pubmed: 28399398
Plant J. 2010 Aug;63(3):417-29
pubmed: 20487379
Nat Methods. 2015 Apr;12(4):357-60
pubmed: 25751142
Ann Bot. 2013 Jun;111(6):1021-58
pubmed: 23558912
Plant Cell Rep. 2018 Aug;37(8):1159-1172
pubmed: 29796948
Sci Rep. 2019 Jan 23;9(1):396
pubmed: 30674899
Front Plant Sci. 2016 Jan 22;7:4
pubmed: 26834774
Curr Opin Plant Biol. 2003 Oct;6(5):410-7
pubmed: 12972040
Funct Plant Biol. 2003 Mar;30(3):239-264
pubmed: 32689007
Trends Plant Sci. 2013 Jan;18(1):30-40
pubmed: 22974587
Proc Natl Acad Sci U S A. 2020 Mar 17;117(11):6205-6215
pubmed: 32123086
Mol Biol Rep. 2019 Apr;46(2):1985-2002
pubmed: 30706357
Front Plant Sci. 2017 Jun 07;8:953
pubmed: 28638395
New Phytol. 2014 Mar;201(4):1192-1204
pubmed: 24261563
Front Plant Sci. 2018 Mar 09;9:310
pubmed: 29593766
Plant Physiol Biochem. 2020 Oct;155:105-113
pubmed: 32745929
Plant Cell. 2010 Mar;22(3):541-63
pubmed: 20354197
J Integr Plant Biol. 2017 Feb;59(2):86-101
pubmed: 27995748
Front Plant Sci. 2015 Oct 29;6:895
pubmed: 26579147

Auteurs

Xin Jia (X)

Beijing Key Laboratory of Ornamental Germplasm Innovation and Molecular Breeding, China National Engineering Research Center for Floriculture, College of Landscape Architecture, Beijing Forestry University, Beijing, China.

Hui Feng (H)

Beijing Key Laboratory of Greening Plant Breeding, Beijing Institute of Landscape Architecture, Beijing, China.

Yanhua Bu (Y)

Beijing Key Laboratory of Greening Plant Breeding, Beijing Institute of Landscape Architecture, Beijing, China.

Naizhe Ji (N)

Beijing Key Laboratory of Greening Plant Breeding, Beijing Institute of Landscape Architecture, Beijing, China.

Yingmin Lyu (Y)

Beijing Key Laboratory of Ornamental Germplasm Innovation and Molecular Breeding, China National Engineering Research Center for Floriculture, College of Landscape Architecture, Beijing Forestry University, Beijing, China.

Shiwei Zhao (S)

Beijing Key Laboratory of Greening Plant Breeding, Beijing Institute of Landscape Architecture, Beijing, China.

Classifications MeSH