Using normative modelling to detect disease progression in mild cognitive impairment and Alzheimer's disease in a cross-sectional multi-cohort study.


Journal

Scientific reports
ISSN: 2045-2322
Titre abrégé: Sci Rep
Pays: England
ID NLM: 101563288

Informations de publication

Date de publication:
03 08 2021
Historique:
received: 20 02 2021
accepted: 22 06 2021
entrez: 4 8 2021
pubmed: 5 8 2021
medline: 10 11 2021
Statut: epublish

Résumé

Normative modelling is an emerging method for quantifying how individuals deviate from the healthy populational pattern. Several machine learning models have been implemented to develop normative models to investigate brain disorders, including regression, support vector machines and Gaussian process models. With the advance of deep learning technology, the use of deep neural networks has also been proposed. In this study, we assessed normative models based on deep autoencoders using structural neuroimaging data from patients with Alzheimer's disease (n = 206) and mild cognitive impairment (n = 354). We first trained the autoencoder on an independent dataset (UK Biobank dataset) with 11,034 healthy controls. Then, we estimated how each patient deviated from this norm and established which brain regions were associated to this deviation. Finally, we compared the performance of our normative model against traditional classifiers. As expected, we found that patients exhibited deviations according to the severity of their clinical condition. The model identified medial temporal regions, including the hippocampus, and the ventricular system as critical regions for the calculation of the deviation score. Overall, the normative model had comparable cross-cohort generalizability to traditional classifiers. To promote open science, we are making all scripts and the trained models available to the wider research community.

Identifiants

pubmed: 34344910
doi: 10.1038/s41598-021-95098-0
pii: 10.1038/s41598-021-95098-0
pmc: PMC8333350
doi:

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

15746

Subventions

Organisme : NIA NIH HHS
ID : P30 AG066444
Pays : United States
Organisme : Medical Research Council
ID : MC_PC_17228
Pays : United Kingdom
Organisme : NIA NIH HHS
ID : R01 AG021910
Pays : United States
Organisme : NIA NIH HHS
ID : RF1 AG063153
Pays : United States
Organisme : Wellcome Trust
ID : WT213038/Z/18/Z
Pays : United Kingdom
Organisme : Wellcome Trust
ID : 208519/Z/17/Z
Pays : United Kingdom
Organisme : NCRR NIH HHS
ID : U24 RR021382
Pays : United States
Organisme : Medical Research Council
ID : MC_QA137853
Pays : United Kingdom
Organisme : NIA NIH HHS
ID : R01 AG073949
Pays : United States
Organisme : NIA NIH HHS
ID : P01 AG003991
Pays : United States
Organisme : NIA NIH HHS
ID : P50 AG005681
Pays : United States
Organisme : NIMH NIH HHS
ID : P50 MH071616
Pays : United States
Organisme : NIA NIH HHS
ID : P01 AG026276
Pays : United States
Organisme : NIA NIH HHS
ID : U01 AG024904
Pays : United States

Informations de copyright

© 2021. The Author(s).

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Auteurs

Walter H L Pinaya (WHL)

Department of Psychosis Studies, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, UK. walter.diaz_sanz@kcl.ac.uk.
Center of Mathematics, Computing, and Cognition, Universidade Federal do ABC, Santo André, Brazil. walter.diaz_sanz@kcl.ac.uk.
Department of Biomedical Engineering, School of Biomedical Engineering and Imaging Sciences, King's College London, London, UK. walter.diaz_sanz@kcl.ac.uk.

Cristina Scarpazza (C)

Department of Psychosis Studies, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, UK.
Department of General Psychology, University of Padua, Padua, Italy.

Rafael Garcia-Dias (R)

Department of Psychosis Studies, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, UK.

Sandra Vieira (S)

Department of Psychosis Studies, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, UK.

Lea Baecker (L)

Department of Psychosis Studies, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, UK.

Pedro F da Costa (P)

Department of Neuroimaging, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, UK.
Centre for Brain and Cognitive Development, Birkbeck College, University of London, London, UK.

Alberto Redolfi (A)

Laboratory of Neuroinformatics, IRCCS Istituto Centro San Giovanni di Dio Fatebenefratelli, Brescia, Italy.

Giovanni B Frisoni (GB)

Laboratory of Alzheimer's Neuroimaging and Epidemiology, IRCCS Istituto Centro San Giovanni di Dio Fatebenefratelli, Brescia, Italy.
Memory Clinic and LANVIE Laboratory of Neuroimaging of Aging, University Hospitals and University of Geneva, Geneva, Switzerland.

Michela Pievani (M)

Laboratory of Alzheimer's Neuroimaging and Epidemiology, IRCCS Istituto Centro San Giovanni di Dio Fatebenefratelli, Brescia, Italy.

Vince D Calhoun (VD)

Tri-Institutional Center for Translational Research in Neuroimaging and Data Science (TReNDS), Georgia State, Georgia Tech, Emory, USA.

João R Sato (JR)

Center of Mathematics, Computing, and Cognition, Universidade Federal do ABC, Santo André, Brazil.

Andrea Mechelli (A)

Department of Psychosis Studies, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, UK.

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