EUAdb: A resource for COVID-19 test development and comparison.


Journal

PloS one
ISSN: 1932-6203
Titre abrégé: PLoS One
Pays: United States
ID NLM: 101285081

Informations de publication

Date de publication:
2021
Historique:
received: 19 02 2021
accepted: 15 07 2021
entrez: 4 8 2021
pubmed: 5 8 2021
medline: 14 8 2021
Statut: epublish

Résumé

Due to the sheer number of COVID-19 (coronavirus disease 2019) cases there is a need for increased world-wide SARS-CoV-2 testing capability that is both efficient and effective. Having open and easy access to detailed information about these tests, their sensitivity, the types of samples they use, etc. would be highly useful to ensure their reproducibility, to help clients compare and decide which tests would be best suited for their applications, and to avoid costs of reinventing similar or identical tests. Additionally, this resource would provide a means of comparing the many innovative diagnostic tools that are currently being developed in order to provide a foundation of technologies and methods for the rapid development and deployment of tests for future emerging diseases. Such a resource might thus help to avert the delays in testing and screening that was observed in the early stages of the pandemic and plausibly led to more COVID-19-related deaths than necessary. We aim to address these needs via a relational database containing standardized ontology and curated data about COVID-19 diagnostic tests that have been granted Emergency Use Authorizations (EUAs) by the FDA (US Food and Drug Administration). Simple queries of this actively growing database demonstrate considerable variation among these tests with respect to sensitivity (limits of detection, LoD), controls and targets used, criteria used for calling results, sample types, reagents and instruments, and quality and amount of information provided.

Identifiants

pubmed: 34347828
doi: 10.1371/journal.pone.0255417
pii: PONE-D-21-05663
pmc: PMC8336808
doi:

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Pagination

e0255417

Subventions

Organisme : NIGMS NIH HHS
ID : R01 GM141395
Pays : United States
Organisme : NIH HHS
ID : 1F32 GM136170
Pays : United States

Commentaires et corrections

Type : UpdateOf

Déclaration de conflit d'intérêts

JDB is a founder and director of the following: Neochromosome, Inc., the Center of Excellence for Engineering Biology, and CDI Labs, Inc. and serves on the Scientific Advisory Board of the following: Sangamo, Inc., Modern Meadow, Inc., and Sample6, Inc. This does not alter our adherence to PLOS ONE policies on sharing data and materials.

Références

Cureus. 2020 Apr 17;12(4):e7708
pubmed: 32313785
Crit Rev Clin Lab Sci. 2020 Sep;57(6):400-414
pubmed: 32662342
Nat Biotechnol. 2020 Sep;38(9):1021-1024
pubmed: 32820257

Auteurs

Alyssa Woronik (A)

Department of Biology, New York University, New York, New York, United States of America.
Department of Biology, Sacred Heart University, Fairfield, Connecticut, United States of America.

Henry W Shaffer (HW)

Department of Biology, New York University, New York, New York, United States of America.

Karin Kiontke (K)

Department of Biology, New York University, New York, New York, United States of America.

Jon M Laurent (JM)

Institute for Systems Genetics and Department of Biochemistry and Molecular Pharmacology, NYU Langone Health, New York, New York, United States of America.

Ronald Zambrano (R)

Department of Ophthalmology, New York University School of Medicine, New York, New York, United States of America.

Mariah Daley (M)

Department of Biology, Sacred Heart University, Fairfield, Connecticut, United States of America.

Jef D Boeke (JD)

Institute for Systems Genetics and Department of Biochemistry and Molecular Pharmacology, NYU Langone Health, New York, New York, United States of America.

David H A Fitch (DHA)

Department of Biology, New York University, New York, New York, United States of America.

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Classifications MeSH