The Epistemic Revolution Induced by Microbiome Studies: An Interdisciplinary View.

evolutionary microbiology humanities individuals law literature microbial ecology microbiomes networks philosophy of biology selection visual art

Journal

Biology
ISSN: 2079-7737
Titre abrégé: Biology (Basel)
Pays: Switzerland
ID NLM: 101587988

Informations de publication

Date de publication:
12 Jul 2021
Historique:
received: 18 05 2021
revised: 01 07 2021
accepted: 06 07 2021
entrez: 6 8 2021
pubmed: 7 8 2021
medline: 7 8 2021
Statut: epublish

Résumé

Many separate fields and practices nowadays consider microbes as part of their legitimate focus. Therefore, microbiome studies may act as unexpected unifying forces across very different disciplines. Here, we summarize how microbiomes appear as novel major biological players, offer new artistic frontiers, new uses from medicine to laws, and inspire novel ontologies. We identify several convergent emerging themes across ecosystem studies, microbial and evolutionary ecology, arts, medicine, forensic analyses, law and philosophy of science, as well as some outstanding issues raised by microbiome studies across these disciplines and practices. An 'epistemic revolution induced by microbiome studies' seems to be ongoing, characterized by four features: (i) an ecologization of pre-existing concepts within disciplines, (ii) a growing interest in systemic analyses of the investigated or represented phenomena and a greater focus on interactions as their root causes, (iii) the intent to use openly multi-scalar interaction networks as an explanatory framework to investigate phenomena to acknowledge the causal effects of microbiomes, (iv) a reconceptualization of the usual definitions of which individuals are worth considering as an explanans or as an explanandum by a given field, which result in a fifth strong trend, namely (v) a de-anthropocentrification of our perception of the world.

Identifiants

pubmed: 34356506
pii: biology10070651
doi: 10.3390/biology10070651
pmc: PMC8301382
pii:
doi:

Types de publication

Journal Article Review

Langues

eng

Subventions

Organisme : Centre National de la Recherche Scientifique
ID : REVMICNAT

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Auteurs

Eric Bapteste (E)

Institut de Systématique, Evolution, Biodiversité (ISYEB), Sorbonne Université, CNRS, Museum National d'Histoire Naturelle, EPHE, Université des Antilles, 75005 Paris, France.

Philippe Gérard (P)

Micalis Institute, INRAE, AgroParisTech, Université Paris-Saclay, 78350 Jouy-en-Josas, France.

Catherine Larose (C)

Environmental Microbial Genomics, Laboratoire Ampère, École Centrale de Lyon, CNRS, University of Lyon, 69134 Ecully, France.

Manuel Blouin (M)

Département Agronomie Agroéquipements Elevage Environnement, UMR 1347 Agroécologie (INRA/AgroSup/Université de Bourgogne), 26 Bd Docteur Petitjean, BP 87999, CEDEX, 21079 Dijon, France.

Fabrice Not (F)

Sorbonne Université, CNRS, AD2M-UMR7144, Station Biologique de Roscoff, 29680 Roscoff, France.

Liliane Campos (L)

PRISMES-Langues, Textes, Arts et Cultures du Monde Anglophone-EA 4398, Université Sorbonne Nouvelle and Institut Universitaire de France, 75005 Paris, France.

Géraldine Aïdan (G)

CERSA, UMR 7106 (CNRS-Université Paris II Panthéon-Assas), 10 rue Thénard, 75005 Paris, France.

M André Selosse (MA)

Institut de Systématique, Evolution, Biodiversité (ISYEB), Sorbonne Université, CNRS, Museum National d'Histoire Naturelle, EPHE, Université des Antilles, 75005 Paris, France.
Faculty of Biology, University of Gdańsk, ul. Wita Stwosza 59, 80-308 Gdańsk, Poland.

M Sarah Adénis (MS)

PILI, 16 Avenue du Bas Meudon, 92130 Issy-les-Moulineaux, France.

Frédéric Bouchard (F)

Département de Philosophie, Université de Montréal, Montréal, QC H3C 3J7, Canada.

Sébastien Dutreuil (S)

Centre Gilles Gaston Granger, CNRS, UMR7304 Université d'Aix-Marseille-Site Schuman, Maison de la Recherche, 29, Avenue Robert Schuman, 13621 Aix-en-Provence, France.

Eduardo Corel (E)

Institut de Systématique, Evolution, Biodiversité (ISYEB), Sorbonne Université, CNRS, Museum National d'Histoire Naturelle, EPHE, Université des Antilles, 75005 Paris, France.

Chloé Vigliotti (C)

UMR MIA-PARIS, 16 Rue Claude Bernard, 75005 Paris, France.

Philippe Huneman (P)

Institut d'Histoire et de Philosophie des Sciences et des Techniques, CNRS/Université Paris I Sorbonne, 13 rue du Four, 75006 Paris, France.

F Joseph Lapointe (FJ)

Département de Sciences Biologiques, Complexe des Sciences, Université de Montréal, 1375 Avenue Thérèse-Lavoie-Roux, Montréal, QC H2V 0B3, Canada.

Philippe Lopez (P)

Institut de Systématique, Evolution, Biodiversité (ISYEB), Sorbonne Université, CNRS, Museum National d'Histoire Naturelle, EPHE, Université des Antilles, 75005 Paris, France.

Classifications MeSH