Analysis of Bacterial Communities on North Sea Macroalgae and Characterization of the Isolated Planctomycetes

Fucus sp. Lacipirellulaceae Laminaria sp. Pirellulaceae Ulva sp. budding bacteria epiphytic community macroalgae marine biofilms

Journal

Microorganisms
ISSN: 2076-2607
Titre abrégé: Microorganisms
Pays: Switzerland
ID NLM: 101625893

Informations de publication

Date de publication:
13 Jul 2021
Historique:
received: 01 06 2021
revised: 06 07 2021
accepted: 08 07 2021
entrez: 7 8 2021
pubmed: 8 8 2021
medline: 8 8 2021
Statut: epublish

Résumé

Planctomycetes are bacteria that were long thought to be unculturable, of low abundance, and therefore neglectable in the environment. This view changed in recent years, after it was shown that members of the phylum

Identifiants

pubmed: 34361930
pii: microorganisms9071494
doi: 10.3390/microorganisms9071494
pmc: PMC8303584
pii:
doi:

Types de publication

Journal Article

Langues

eng

Subventions

Organisme : Deutsche Forschungsgemeinschaft
ID : JO 893/4-1
Organisme : Deutsche Forschungsgemeinschaft
ID : KA 4967/1-1
Organisme : Deutsche Forschungsgemeinschaft
ID : KA 4967/3-1

Références

Syst Appl Microbiol. 2020 Jan;43(1):126022
pubmed: 31785948
Front Microbiol. 2017 Dec 22;8:2561
pubmed: 29312241
Nature. 2015 Jul 9;523(7559):208-11
pubmed: 26083755
Microb Ecol. 2010 Aug;60(2):282-90
pubmed: 20333374
Nat Microbiol. 2020 Jan;5(1):126-140
pubmed: 31740763
Syst Appl Microbiol. 2014 May;37(3):157-64
pubmed: 24631661
Appl Environ Microbiol. 2011 Jun;77(11):3846-52
pubmed: 21460107
Bioinformatics. 2006 Jul 1;22(13):1658-9
pubmed: 16731699
Mar Genomics. 2013 Mar;9:51-61
pubmed: 23273849
Annu Rev Microbiol. 1995;49:711-45
pubmed: 8561477
Mol Biol Evol. 2000 Apr;17(4):540-52
pubmed: 10742046
Int J Syst Evol Microbiol. 2016 Feb;66(2):1100-1103
pubmed: 26585518
BMC Bioinformatics. 2011 Apr 28;12:124
pubmed: 21526987
Biofouling. 2016;32(1):57-69
pubmed: 26751559
Antonie Van Leeuwenhoek. 2013 Oct;104(4):477-88
pubmed: 23904187
Nat Commun. 2017 Apr 10;8:14853
pubmed: 28393831
Sci Rep. 2013 Nov 11;3:3180
pubmed: 24212283
Antonie Van Leeuwenhoek. 2020 Dec;113(12):1751-1766
pubmed: 31802338
Microorganisms. 2020 Oct 26;8(11):
pubmed: 33114532
FEMS Microbiol Lett. 2004 Apr 1;233(1):7-13
pubmed: 15098544
J Environ Manage. 2019 Nov 15;250:109459
pubmed: 31479939
Syst Appl Microbiol. 2015 Feb;38(1):8-15
pubmed: 25487949
BMC Genomics. 2009 Sep 02;10:410
pubmed: 19725962
Mol Syst Biol. 2011 Oct 11;7:539
pubmed: 21988835
Int J Syst Evol Microbiol. 2016 Feb;66(2):633-638
pubmed: 26559645
ACS Chem Biol. 2019 Dec 20;14(12):2713-2719
pubmed: 31644258
Appl Environ Microbiol. 1993 Jan;59(1):243-9
pubmed: 16348849
Syst Appl Microbiol. 2020 Jan;43(1):126050
pubmed: 31882205
Antonie Van Leeuwenhoek. 2014 Feb;105(2):317-24
pubmed: 24264814
Int J Syst Evol Microbiol. 2017 May;67(5):1571-1576
pubmed: 28036240
Antonie Van Leeuwenhoek. 2020 Dec;113(12):1727-1736
pubmed: 31773447
Nat Commun. 2019 Jul 2;10(1):2916
pubmed: 31266954
Front Microbiol. 2015 Oct 30;6:1192
pubmed: 26579098
Antonie Van Leeuwenhoek. 2019 Aug;112(8):1273-1280
pubmed: 30919144
Environ Microbiol. 2021 Mar;23(3):1379-1396
pubmed: 33331109
Bioinformatics. 2014 Aug 1;30(15):2114-20
pubmed: 24695404
Bioinformatics. 2014 May 1;30(9):1312-3
pubmed: 24451623
Int J Syst Evol Microbiol. 2020 Apr;70(4):2616-2623
pubmed: 32129737
Antonie Van Leeuwenhoek. 2020 Dec;113(12):1889-1900
pubmed: 32399714
Antonie Van Leeuwenhoek. 2020 Dec;113(12):1767-1778
pubmed: 31807932
Antonie Van Leeuwenhoek. 2013 Oct;104(4):489-97
pubmed: 23929088
Antonie Van Leeuwenhoek. 2020 Dec;113(12):1965-1977
pubmed: 32833165
Antonie Van Leeuwenhoek. 2020 Dec;113(12):1915-1926
pubmed: 32583191
Wei Sheng Wu Xue Bao. 2009 Dec;49(12):1555-63
pubmed: 20222438
Int J Syst Evol Microbiol. 2004 Sep;54(Pt 5):1567-1580
pubmed: 15388712
Antonie Van Leeuwenhoek. 2013 Oct;104(4):467-76
pubmed: 23857394
Int J Syst Evol Microbiol. 2014 Feb;64(Pt 2):346-351
pubmed: 24505072
BMC Microbiol. 2010 Oct 15;10:261
pubmed: 20950420
Environ Microbiol. 2011 Mar;13(3):655-65
pubmed: 21078035
Antonie Van Leeuwenhoek. 2020 Dec;113(12):1877-1887
pubmed: 32399715
Bioinformatics. 2012 Jul 15;28(14):1823-9
pubmed: 22556368
Antonie Van Leeuwenhoek. 2020 Dec;113(12):1823-1837
pubmed: 31894496
World J Microbiol Biotechnol. 2019 Apr 29;35(5):73
pubmed: 31037431
PeerJ. 2018 Jan 25;6:e4320
pubmed: 29423345
Mar Genomics. 2014 Feb;13:19-20
pubmed: 24286833
Nucleic Acids Res. 2019 Jan 8;47(D1):D351-D360
pubmed: 30398656
Microbiol Mol Biol Rev. 2015 Dec 23;80(1):91-138
pubmed: 26700108
Front Microbiol. 2012 Dec 03;3:405
pubmed: 23335915
Mol Microbiol. 2000 Jul;37(1):1-12
pubmed: 10931301
Antonie Van Leeuwenhoek. 2020 Dec;113(12):1811-1822
pubmed: 31894497
Nucleic Acids Res. 2019 Jan 8;47(D1):D506-D515
pubmed: 30395287
Nucleic Acids Res. 2013 Jan;41(Database issue):D590-6
pubmed: 23193283
Nat Rev Microbiol. 2014 Sep;12(9):635-45
pubmed: 25118885
Front Microbiol. 2017 Feb 13;8:202
pubmed: 28243229
J Biol Chem. 1989 May 25;264(15):8935-40
pubmed: 2498321
Environ Microbiol Rep. 2019 Jun;11(3):287-305
pubmed: 30246474
J Antibiot (Tokyo). 2018 Jun;71(6):575-583
pubmed: 29467380
Nucleic Acids Res. 2019 Jul 2;47(W1):W256-W259
pubmed: 30931475
Nat Rev Microbiol. 2018 Oct;16(10):629-645
pubmed: 30181663
Ann Rev Mar Sci. 2020 Jan 3;12:209-232
pubmed: 31226027
Antonie Van Leeuwenhoek. 2013 Oct;104(4):551-67
pubmed: 23982431
Front Microbiol. 2020 Jul 16;11:1408
pubmed: 32765432
Antonie Van Leeuwenhoek. 2020 Dec;113(12):1939-1952
pubmed: 32623658
Appl Environ Microbiol. 2011 Aug 15;77(16):5826-9
pubmed: 21724885
Nat Commun. 2019 Jan 31;10(1):517
pubmed: 30705275
Biotechnol Adv. 2016 Jan-Feb;34(1):14-29
pubmed: 26657897
Appl Environ Microbiol. 2011 Mar;77(6):2130-40
pubmed: 21296954
Syst Appl Microbiol. 2017 Sep;40(6):370-382
pubmed: 28641923
Nucleic Acids Res. 2014 Apr;42(8):e73
pubmed: 24589583
ISME J. 2016 Dec;10(12):2801-2816
pubmed: 27300277
J Gen Appl Microbiol. 2009 Aug;55(4):267-75
pubmed: 19700920
Arch Microbiol. 2021 Mar;203(2):741-754
pubmed: 33047175
J Clin Microbiol. 1982 Sep;16(3):584-6
pubmed: 7130373
Mol Biol Evol. 2020 Jul 1;37(7):1925-1941
pubmed: 32125435
Front Microbiol. 2017 Mar 29;8:472
pubmed: 28424662
Front Microbiol. 2014 Jun 03;5:267
pubmed: 24917860
Elife. 2015 May 21;4:
pubmed: 25997099
Commun Biol. 2020 Jun 12;3(1):303
pubmed: 32533057
Int J Syst Evol Microbiol. 2013 Nov;63(Pt 11):4340-4349
pubmed: 24187021
FEMS Microbiol Rev. 2018 Nov 1;42(6):739-760
pubmed: 30052954
Appl Environ Microbiol. 1993 Mar;59(3):695-700
pubmed: 7683183
J Bacteriol. 2014 Jun;196(12):2210-5
pubmed: 24706738
FEMS Microbiol Ecol. 2017 Mar 1;93(3):
pubmed: 28087803
Appl Environ Microbiol. 2006 Sep;72(9):5679-88
pubmed: 16957182
Nat Rev Microbiol. 2019 Jul;17(7):429-440
pubmed: 30988511
FEMS Microbiol Ecol. 2011 Nov;78(2):366-75
pubmed: 21726244
PLoS One. 2010 Mar 10;5(3):e9490
pubmed: 20224823
Proc Natl Acad Sci U S A. 2002 Apr 16;99(8):5261-6
pubmed: 11959976
Environ Microbiol Rep. 2019 Dec;11(6):741-748
pubmed: 31600855
Microbiol Immunol. 2005;49(4):303-10
pubmed: 15840955
Antonie Van Leeuwenhoek. 2020 Dec;113(12):1979-1997
pubmed: 33151460
FEMS Microbiol Ecol. 2014 Jun;88(3):445-56
pubmed: 24266389
PeerJ. 2015 Oct 08;3:e1319
pubmed: 26500826
J Bacteriol. 2015 Jul;197(14):2432-41
pubmed: 25962914
Nucleic Acids Res. 2004 Mar 19;32(5):1792-7
pubmed: 15034147
Antonie Van Leeuwenhoek. 2013 Oct;104(4):569-84
pubmed: 24018702
FEMS Microbiol Ecol. 2013 Jan;83(1):1-16
pubmed: 22775757
Int J Syst Evol Microbiol. 2015 Mar;65(Pt 3):760-765
pubmed: 25479950
Bioinformatics. 2011 Aug 15;27(16):2194-200
pubmed: 21700674
Nucleic Acids Res. 2019 Jul 2;47(W1):W81-W87
pubmed: 31032519

Auteurs

Sandra Wiegand (S)

Department of Microbiology, Radboud University, 6525 AJ Nijmegen, The Netherlands.
Institute for Biological Interfaces 5 (IBG-5), Karlsruhe Institute of Technology, 76131 Karlsruhe, Germany.

Patrick Rast (P)

Leibniz Institute DSMZ, 38124 Braunschweig, Germany.

Nicolai Kallscheuer (N)

Department of Microbiology, Radboud University, 6525 AJ Nijmegen, The Netherlands.
Institute of Bio- and Geosciences, Biotechnology (IBG-1), Forschungszentrum Jülich GmbH, 52428 Jülich, Germany.

Mareike Jogler (M)

Department of Microbial Interactions, Institute of Microbiology, Friedrich-Schiller University, 07743 Jena, Germany.

Anja Heuer (A)

Leibniz Institute DSMZ, 38124 Braunschweig, Germany.

Christian Boedeker (C)

Leibniz Institute DSMZ, 38124 Braunschweig, Germany.

Olga Jeske (O)

Leibniz Institute DSMZ, 38124 Braunschweig, Germany.

Timo Kohn (T)

Department of Microbiology, Radboud University, 6525 AJ Nijmegen, The Netherlands.

John Vollmers (J)

Institute for Biological Interfaces 5 (IBG-5), Karlsruhe Institute of Technology, 76131 Karlsruhe, Germany.

Anne-Kristin Kaster (AK)

Institute for Biological Interfaces 5 (IBG-5), Karlsruhe Institute of Technology, 76131 Karlsruhe, Germany.

Christian Quast (C)

Max Planck Institute for Marine Microbiology, 28359 Bremen, Germany.

Frank Oliver Glöckner (FO)

Alfred Wegener Institute Bremerhaven, MARUM, University of Bremen, 28359 Bremen, Germany.

Manfred Rohde (M)

Central Facility for Microscopy, Helmholtz Centre for Infection Research, 38124 Braunschweig, Germany.

Christian Jogler (C)

Department of Microbiology, Radboud University, 6525 AJ Nijmegen, The Netherlands.
Department of Microbial Interactions, Institute of Microbiology, Friedrich-Schiller University, 07743 Jena, Germany.

Classifications MeSH