OGRI apiculate yeast domestication gene loss new species phylogenomics speciation

Journal

Frontiers in microbiology
ISSN: 1664-302X
Titre abrégé: Front Microbiol
Pays: Switzerland
ID NLM: 101548977

Informations de publication

Date de publication:
2021
Historique:
received: 12 03 2021
accepted: 28 06 2021
entrez: 9 8 2021
pubmed: 10 8 2021
medline: 10 8 2021
Statut: epublish

Résumé

During a survey of

Identifiants

pubmed: 34367085
doi: 10.3389/fmicb.2021.679894
pmc: PMC8334367
doi:

Banques de données

figshare
['10.6084/m9.figshare.7670756.v2']

Types de publication

Journal Article

Langues

eng

Pagination

679894

Informations de copyright

Copyright © 2021 Čadež, Bellora, Ulloa, Tome, Petković, Groenewald, Hittinger and Libkind.

Déclaration de conflit d'intérêts

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Références

Mol Biol Evol. 2018 Jun 1;35(6):1547-1549
pubmed: 29722887
Antonie Van Leeuwenhoek. 2010 Feb;97(2):155-70
pubmed: 19941164
Mol Biol Evol. 2013 Apr;30(4):772-80
pubmed: 23329690
Antonie Van Leeuwenhoek. 2020 Jun;113(6):753-762
pubmed: 32100143
Mol Microbiol. 2000 Mar;35(6):1421-30
pubmed: 10760143
Proc Natl Acad Sci U S A. 2011 Aug 30;108(35):14539-44
pubmed: 21873232
Science. 2001 Mar 30;291(5513):2606-8
pubmed: 11283373
Bioinformatics. 2009 Aug 1;25(15):1972-3
pubmed: 19505945
Nucleic Acids Res. 2019 Jan 8;47(D1):D330-D338
pubmed: 30395331
Front Microbiol. 2020 Jan 15;10:2960
pubmed: 32010076
Nucleic Acids Res. 2004 Mar 19;32(5):1792-7
pubmed: 15034147
Appl Environ Microbiol. 2004 May;70(5):2771-8
pubmed: 15128531
Int J Syst Evol Microbiol. 2006 May;56(Pt 5):1157-1165
pubmed: 16627671
Int J Syst Evol Microbiol. 2003 Sep;53(Pt 5):1671-1680
pubmed: 13130067
Rev Argent Microbiol. 2011 Jul-Sep;43(3):226-32
pubmed: 22430994
Antonie Van Leeuwenhoek. 1978;44(1):79-96
pubmed: 566079
Environ Microbiol. 2018 Oct;20(10):3732-3743
pubmed: 30105823
Bioinformatics. 2008 Mar 1;24(5):637-44
pubmed: 18218656
Nat Commun. 2018 Nov 30;9(1):5114
pubmed: 30504855
BMC Bioinformatics. 2011 Dec 22;12:491
pubmed: 22192575
FEMS Yeast Res. 2017 May 1;17(3):
pubmed: 28419220
Bioinformatics. 2014 Aug 1;30(15):2114-20
pubmed: 24695404
Bioinformatics. 2014 May 1;30(9):1312-3
pubmed: 24451623
Nat Rev Genet. 2014 Mar;15(3):176-92
pubmed: 24535286
Mol Biol Evol. 2006 Feb;23(2):254-67
pubmed: 16221896
Nat Rev Genet. 2016 Jul;17(7):379-91
pubmed: 27087500
Nat Genet. 2000 May;25(1):25-9
pubmed: 10802651
Appl Environ Microbiol. 2008 Apr;74(7):2144-52
pubmed: 18281431
FEMS Yeast Res. 2020 Sep 1;20(6):
pubmed: 32710773
Bioinformatics. 2015 Oct 1;31(19):3210-2
pubmed: 26059717
Nucleic Acids Res. 2012 Jan;40(Database issue):D700-5
pubmed: 22110037
Annu Rev Microbiol. 2014;68:61-80
pubmed: 24773331
Antonie Van Leeuwenhoek. 2020 Dec;113(12):2097-2106
pubmed: 33048250
BMC Bioinformatics. 2013 Feb 21;14:60
pubmed: 23432962
Int J Syst Evol Microbiol. 2015 Oct;65(10):3576-3579
pubmed: 26297247
Nature. 2013 May 16;497(7449):327-31
pubmed: 23657258
Ecol Evol. 2018 Feb 14;8(5):2962-2974
pubmed: 29531709
Appl Environ Microbiol. 2012 Jul;78(14):4869-73
pubmed: 22582060
Nat Commun. 2014 Jun 02;5:4044
pubmed: 24887054
PLoS Biol. 2019 May 21;17(5):e3000255
pubmed: 31112549
FEMS Yeast Res. 2018 Nov 1;18(7):
pubmed: 30016423
PLoS One. 2011;6(7):e21800
pubmed: 21789182
FEMS Yeast Res. 2020 Mar 1;20(2):
pubmed: 32009143
Appl Environ Microbiol. 2007 Feb;73(4):1120-5
pubmed: 17189439
Genome Res. 2008 Dec;18(12):1979-90
pubmed: 18757608
J Comput Biol. 2012 May;19(5):455-77
pubmed: 22506599
G3 (Bethesda). 2016 Nov 8;6(11):3655-3662
pubmed: 27638685
Mol Biol Evol. 2014 May;31(5):1261-71
pubmed: 24509691
Antonie Van Leeuwenhoek. 2017 Oct;110(10):1281-1286
pubmed: 28204908
Rev Argent Microbiol. 2021 Mar 2;:
pubmed: 33674169
Bioinformatics. 2013 Apr 15;29(8):1072-5
pubmed: 23422339
Int J Syst Evol Microbiol. 2019 Jun;71(3):
pubmed: 33720007
Evolution. 1985 Jul;39(4):783-791
pubmed: 28561359
Nat Commun. 2016 Mar 29;7:11128
pubmed: 27020939
Nat Methods. 2017 Jun;14(6):587-589
pubmed: 28481363
Mol Ecol. 2000 Oct;9(10):1657-9
pubmed: 11050560
Cell. 2018 Nov 29;175(6):1533-1545.e20
pubmed: 30415838
FEBS J. 2007 Feb;274(4):976-89
pubmed: 17239085
Proc Natl Acad Sci U S A. 2016 Aug 30;113(35):9882-7
pubmed: 27535936
Cold Spring Harb Protoc. 2016 Oct 3;2016(10):
pubmed: 27698239
Mol Biol Evol. 2018 Mar 1;35(3):543-548
pubmed: 29220515
BMC Bioinformatics. 2004 May 14;5:59
pubmed: 15144565
PLoS One. 2019 Jan 30;14(1):e0210792
pubmed: 30699175
Antonie Van Leeuwenhoek. 1998 May;73(4):331-71
pubmed: 9850420

Auteurs

Neža Čadež (N)

Food Science and Technology Department, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia.

Nicolas Bellora (N)

Centro de Referencia en Levaduras y Tecnología Cervecera (CRELTEC), Instituto Andino Patagónico de Tecnologías Biológicas y Geoambientales (IPATEC), Consejo Nacional de Investigaciones, Científicas y Técnicas (CONICET), Universidad Nacional del Comahue, Bariloche, Argentina.

Ricardo Ulloa (R)

Laboratorio de Bioprocesos, Instituto de Investigación y Desarrollo en Ingeniería de Procesos, Biotecnología y Energías Alternativas, Consejo Nacional de Investigaciones, Científicas y Técnicas (CONICET), Universidad Nacional del Comahue, Neuquén, Argentina.

Miha Tome (M)

Food Science and Technology Department, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia.

Hrvoje Petković (H)

Food Science and Technology Department, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia.

Marizeth Groenewald (M)

Westerdijk Fungal Biodiversity Institute, Utrecht, Netherlands.

Chris Todd Hittinger (CT)

Laboratory of Genetics, Center for Genomic Science Innovation, DOE Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, J. F. Crow Institute for the Study of Evolution, University of Wisconsin-Madison, Madison, WI, United States.

Diego Libkind (D)

Centro de Referencia en Levaduras y Tecnología Cervecera (CRELTEC), Instituto Andino Patagónico de Tecnologías Biológicas y Geoambientales (IPATEC), Consejo Nacional de Investigaciones, Científicas y Técnicas (CONICET), Universidad Nacional del Comahue, Bariloche, Argentina.

Classifications MeSH