Divergent Genomic Adaptations in the Microbiomes of Arctic Subzero Sea-Ice and Cryopeg Brines.
cryopeg
cryosphere
hypersalinity
metagenomics
metatranscriptomics
microbial ecology
sea ice
subzero temperature
Journal
Frontiers in microbiology
ISSN: 1664-302X
Titre abrégé: Front Microbiol
Pays: Switzerland
ID NLM: 101548977
Informations de publication
Date de publication:
2021
2021
Historique:
received:
27
04
2021
accepted:
29
06
2021
entrez:
9
8
2021
pubmed:
10
8
2021
medline:
10
8
2021
Statut:
epublish
Résumé
Subzero hypersaline brines are liquid microbial habitats within otherwise frozen environments, where concentrated dissolved salts prevent freezing. Such extreme conditions presumably require unique microbial adaptations, and possibly altered ecologies, but specific strategies remain largely unknown. Here we examined prokaryotic taxonomic and functional diversity in two seawater-derived subzero hypersaline brines: first-year sea ice, subject to seasonally fluctuating conditions; and ancient cryopeg, under relatively stable conditions geophysically isolated in permafrost. Overall, both taxonomic composition and functional potential were starkly different. Taxonomically, sea-ice brine communities (∼10
Identifiants
pubmed: 34367102
doi: 10.3389/fmicb.2021.701186
pmc: PMC8339730
doi:
Types de publication
Journal Article
Langues
eng
Pagination
701186Informations de copyright
Copyright © 2021 Rapp, Sullivan and Deming.
Déclaration de conflit d'intérêts
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Références
Science. 2008 Sep 19;321(5896):1648
pubmed: 18801991
mSystems. 2019 Feb 5;4(1):
pubmed: 30746496
J Am Chem Soc. 2015 Jan 14;137(1):179-89
pubmed: 25525681
Genome Biol. 2015 Mar 25;16:53
pubmed: 25885687
Environ Microbiol. 2013 May;15(5):1318-33
pubmed: 23199136
Front Microbiol. 2011 Aug 12;2:172
pubmed: 21886640
PLoS Comput Biol. 2006 Nov 3;2(11):e143
pubmed: 17083272
FEMS Microbiol Rev. 2000 Jul;24(3):263-90
pubmed: 10841973
Nat Rev Microbiol. 2015 Nov;13(11):677-90
pubmed: 26344407
Proteomes. 2017 Feb 23;5(1):
pubmed: 28248259
Appl Environ Microbiol. 2013 Jan;79(1):74-80
pubmed: 23064337
Proc Natl Acad Sci U S A. 2005 Aug 2;102(31):10913-8
pubmed: 16043709
Methods Mol Biol. 2004;266:71-113
pubmed: 15148416
FEMS Microbiol Ecol. 2019 Dec 1;95(12):
pubmed: 31626297
Nat Commun. 2019 Jan 16;10(1):264
pubmed: 30651568
BMC Genomics. 2015 Mar 17;16:193
pubmed: 25885210
Environ Microbiol. 2010 Oct;12(10):2658-76
pubmed: 20482592
PLoS Pathog. 2009 Nov;5(11):e1000660
pubmed: 19915718
Sci Rep. 2017 Feb 08;7:42242
pubmed: 28176868
Genome Biol Evol. 2014 Jan;6(1):133-48
pubmed: 24391155
Extremophiles. 2013 Jul;17(4):601-10
pubmed: 23674353
FEMS Microbiol Ecol. 2014 Aug;89(2):476-89
pubmed: 24903191
Sci Rep. 2020 Jan 15;10(1):330
pubmed: 31941915
Curr Opin Biotechnol. 2012 Jun;23(3):467-73
pubmed: 22226959
Environ Microbiol. 2010 Jul;12(7):1828-41
pubmed: 20192970
Appl Environ Microbiol. 2008 Oct;74(19):5867-74
pubmed: 18708516
Virulence. 2014 May 15;5(4):534-46
pubmed: 24603093
BMC Genomics. 2008 Nov 18;9:547
pubmed: 19019206
Science. 2006 Jan 27;311(5760):496-503
pubmed: 16439655
Annu Rev Microbiol. 2002;56:117-37
pubmed: 12142491
FEMS Microbiol Ecol. 2014 Aug;89(2):376-87
pubmed: 24673287
FEMS Microbiol Ecol. 2001 May;35(3):267-275
pubmed: 11311437
Mol Ecol. 2013 Mar;22(6):1503-17
pubmed: 23293987
Curr Opin Microbiol. 2010 Apr;13(2):219-25
pubmed: 20133179
mSystems. 2020 Jun 16;5(3):
pubmed: 32546670
Annu Rev Biochem. 2009;78:605-47
pubmed: 19344251
Nucleic Acids Res. 2013 Jan;41(Database issue):D590-6
pubmed: 23193283
PeerJ. 2015 Aug 13;3:e1183
pubmed: 26339559
ISME J. 2009 Dec;3(12):1420-4
pubmed: 19571895
Nucleic Acids Res. 2019 Jul 2;47(W1):W256-W259
pubmed: 30931475
Science. 2015 Jan 2;347(6217):63-7
pubmed: 25554784
PLoS One. 2013 May 06;8(5):e63422
pubmed: 23671678
Nat Rev Microbiol. 2020 Apr;18(4):241-256
pubmed: 32055027
Astrobiology. 2003 Summer;3(2):331-41
pubmed: 14577882
mSystems. 2020 Oct 27;5(5):
pubmed: 33109753
Annu Rev Microbiol. 1999;53:189-215
pubmed: 10547690
Proc Natl Acad Sci U S A. 2007 Feb 27;104(9):3526-31
pubmed: 17360677
Nucleic Acids Res. 2016 Jan 4;44(D1):D457-62
pubmed: 26476454
Int J Syst Evol Microbiol. 2015 Sep;65(9):2838-2845
pubmed: 25985830
Nat Rev Microbiol. 2005 Sep;3(9):722-32
pubmed: 16138100
Genome Res. 2018 Apr;28(4):569-580
pubmed: 29496730
Trends Microbiol. 2000 Nov;8(11):498-504
pubmed: 11121759
Nat Rev Microbiol. 2016 Aug 11;14(9):563-75
pubmed: 27510863
FEMS Microbiol Ecol. 2018 Apr 1;94(4):
pubmed: 29528411
Arch Microbiol. 1998 Oct;170(5):319-30
pubmed: 9818351
Mikrobiologiia. 2009 Jan-Feb;78(1):98-105
pubmed: 19334602
Mol Microbiol. 1995 Jul;17(2):205-10
pubmed: 7494469
Int J Syst Evol Microbiol. 2008 Jun;58(Pt 6):1463-6
pubmed: 18523195
Science. 2003 Sep 12;301(5639):1496-9
pubmed: 12970556
FEMS Microbiol Ecol. 2018 Mar 1;94(3):
pubmed: 29444218
Life (Basel). 2018 Mar 13;8(1):
pubmed: 29534000
Stand Genomic Sci. 2016 Feb 24;11:17
pubmed: 26918089
Sci Rep. 2020 Feb 18;10(1):2865
pubmed: 32071324
FEMS Microbiol Ecol. 2016 May;92(5):fiw053
pubmed: 26976841
Nucleic Acids Res. 2005 Feb 17;33(3):966-76
pubmed: 15718296
Arch Microbiol. 2002 May;177(5):371-80
pubmed: 11976746
Nucleic Acids Res. 2019 Jan 8;47(D1):D666-D677
pubmed: 30289528
ISME J. 2017 Nov;11(11):2611-2623
pubmed: 28731472
Microbiol Rev. 1989 Mar;53(1):121-47
pubmed: 2651863
Cell Mol Biol (Noisy-le-grand). 2004 Jul;50(5):631-42
pubmed: 15559979
ISME J. 2010 Oct;4(10):1326-39
pubmed: 20445635
FEMS Microbiol Rev. 2014 Sep;38(5):865-91
pubmed: 24499397
Appl Microbiol. 1968 Apr;16(4):620-3
pubmed: 5647522
Appl Environ Microbiol. 2011 Apr;77(8):2763-71
pubmed: 21335390
Front Microbiol. 2013 May 22;4:136
pubmed: 23734151
Mol Microbiol. 2017 May;104(3):463-471
pubmed: 28164379
Brief Bioinform. 2019 Jul 19;20(4):1160-1166
pubmed: 28968734
Front Microbiol. 2018 May 18;9:1035
pubmed: 29875749
BMC Bioinformatics. 2010 Feb 09;11:80
pubmed: 20144198
J Phycol. 2019 Jun;55(3):663-675
pubmed: 30685888
Nucleic Acids Res. 2010 Jul;38(13):4207-17
pubmed: 20215432
mBio. 2017 Jul 25;8(4):
pubmed: 28743812
Appl Environ Microbiol. 2009 Aug;75(16):5345-55
pubmed: 19542347
J Bacteriol. 2008 Jan;190(2):613-24
pubmed: 17993514
Proc Natl Acad Sci U S A. 2003 Aug 5;100(16):9440-5
pubmed: 12883005
Genome Res. 2005 Oct;15(10):1325-35
pubmed: 16169927
Microbiome. 2017 Feb 8;5(1):19
pubmed: 28179006
Comp Biochem Physiol A Mol Integr Physiol. 2001 Oct;130(3):437-60
pubmed: 11913457
Nat Commun. 2020 May 4;11(1):2201
pubmed: 32366820
Nature. 2008 Apr 10;452(7188):741-4
pubmed: 18337719
FEMS Microbiol Ecol. 2005 Jun 1;53(1):117-28
pubmed: 16329934
Appl Environ Microbiol. 2007 Jun;73(12):4029-39
pubmed: 17468282
Environ Microbiol Rep. 2016 Aug;8(4):527-35
pubmed: 27264318
ISME J. 2014 Jan;8(1):187-211
pubmed: 24030599
mSystems. 2020 Aug 4;5(4):
pubmed: 32753510
Mol Cell. 2018 Jun 7;70(5):768-784
pubmed: 29398446
Microbiol Res. 2018 Mar;207:161-169
pubmed: 29458850
Int J Syst Evol Microbiol. 2015 Dec;65(12):4873-4879
pubmed: 26442839
Microbiol Mol Biol Rev. 2017 Aug 9;81(3):
pubmed: 28794225
Nat Rev Microbiol. 2014 Feb;12(2):137-48
pubmed: 24384601
Cell. 2016 Sep 22;167(1):99-110.e12
pubmed: 27616061
Environ Microbiol. 2019 Jul;21(7):2290-2306
pubmed: 30927377
Biology (Basel). 2013 Mar 28;2(2):603-28
pubmed: 24832800