Species diversity of freshwater shrimp in Henan Province, China, based on morphological characters and

COI freshwater shrimps species delimitation species diversity

Journal

Ecology and evolution
ISSN: 2045-7758
Titre abrégé: Ecol Evol
Pays: England
ID NLM: 101566408

Informations de publication

Date de publication:
Aug 2021
Historique:
received: 11 12 2020
revised: 05 06 2021
accepted: 08 06 2021
entrez: 9 8 2021
pubmed: 10 8 2021
medline: 10 8 2021
Statut: epublish

Résumé

Freshwater shrimp are a rich species group, with a long and problematic taxonomic history attributed to their wide distribution and similar morphological characteristics. Shrimp diversity and species identification are important cornerstones for fisheries management. However, identification based on morphological characteristics is a difficult task for a nonspecialist. Abundant freshwater shrimp species are distributed in the waters of Henan Province, but investigations of freshwater shrimp are limited in this region, especially concerning molecular features. Here, we combined morphology and DNA barcodes to reveal the species diversity of freshwater shrimp in Henan province. A total of 1,200 freshwater shrimp samples were collected from 46 sampling sites, and 222 samples were chosen for further microscopic examination and molecular delimitation. We used tree-based methods (NJ, ML, and bPTP) and distance-based methods (estimation of the paired genetic distances and ABGD) to delimit species. The results showed that there were nine morphospecies based on morphological characteristics; all could effectively be defined by molecular methods, among which bPTP and ABGD defined 13 and 8 MOTUs, respectively. The estimation of the paired genetic distances of K2P and the p-distances had similar results. Mean K2P distances and p-distances within species were both equal to 1.2%. The maximum intraspecific genetic distances of all species were less than 2%, with the exception of

Identifiants

pubmed: 34367592
doi: 10.1002/ece3.7855
pii: ECE37855
pmc: PMC8328406
doi:

Types de publication

Journal Article

Langues

eng

Pagination

10502-10514

Informations de copyright

© 2021 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd.

Déclaration de conflit d'intérêts

All authors declare that they have no competing interests.

Références

Ecol Evol. 2018 Jun 13;8(14):6932-6951
pubmed: 30073057
PLoS One. 2013 Jul 12;8(7):e68242
pubmed: 23874561
Bioinformatics. 2009 Jun 1;25(11):1451-2
pubmed: 19346325
Mol Ecol Resour. 2017 Nov;17(6):1168-1182
pubmed: 28161911
Trends Ecol Evol. 2007 Aug;22(8):391-2
pubmed: 17573150
Proc Biol Sci. 2003 Feb 7;270(1512):313-21
pubmed: 12614582
Methods Mol Biol. 1997;70:75-89
pubmed: 9089604
PLoS One. 2011 Mar 15;6(3):e17812
pubmed: 21423623
Syst Biol. 2007 Dec;56(6):879-86
pubmed: 18027281
Bioinformatics. 2013 Nov 15;29(22):2869-76
pubmed: 23990417
Syst Biol. 2018 Sep 1;67(5):830-846
pubmed: 29462495
Annu Rev Entomol. 2010;55:421-38
pubmed: 19737081
Ecol Evol. 2019 Dec 08;9(24):14217-14233
pubmed: 31938513
Mitochondrial DNA. 2011 Oct;22 Suppl 1:97-105
pubmed: 21707317
PLoS One. 2017 Oct 30;12(10):e0186259
pubmed: 29084279
Mol Ecol. 2012 Apr;21(8):1864-77
pubmed: 21883587
Proc Biol Sci. 2003 Aug 7;270 Suppl 1:S96-9
pubmed: 12952648
Ecol Evol. 2016 Mar 17;6(9):2702-13
pubmed: 27066250
Bioinformatics. 2014 May 1;30(9):1312-3
pubmed: 24451623
Philos Trans R Soc Lond B Biol Sci. 2005 Oct 29;360(1462):1905-16
pubmed: 16214748
PLoS One. 2013;8(2):e56584
pubmed: 23437177
Brief Bioinform. 2004 Mar;5(1):82-7
pubmed: 15153308
Ital J Food Saf. 2018 Jul 03;7(2):6894
pubmed: 30046552
Trends Ecol Evol. 2014 Jun;29(6):358-67
pubmed: 24821515
Zootaxa. 2018 Feb 28;4388(1):123-132
pubmed: 29690469
Mol Ecol Resour. 2015 Jan;15(1):57-67
pubmed: 24935524
Syst Biol. 2005 Oct;54(5):852-9
pubmed: 16243770
PLoS One. 2015 Mar 25;10(3):e0120198
pubmed: 25807292
Syst Biol. 2015 Jan;64(1):152-60
pubmed: 25358968
J Hered. 2015;106 Suppl 1:560-4
pubmed: 26245790
Mol Ecol Resour. 2020 Nov;20(6):1761-1768
pubmed: 32623815
Mol Ecol Resour. 2014 Jul;14(4):706-15
pubmed: 24479435
Sci Rep. 2018 Jul 10;8(1):10361
pubmed: 29991759
Mol Mar Biol Biotechnol. 1994 Oct;3(5):294-9
pubmed: 7881515
Mol Ecol Resour. 2015 Jul;15(4):795-818
pubmed: 25469559
Mol Biol Evol. 2016 Jul;33(7):1870-4
pubmed: 27004904

Auteurs

Chuan-Jiang Zhou (CJ)

College of Fisheries Engineering Technology Research Center of Henan Province for Aquatic Animal Cultivation Engineering Lab of Henan Province for Aquatic Animal Disease Control Henan Normal University Xinxiang China.

Meng-Xia Feng (MX)

College of Fisheries Engineering Technology Research Center of Henan Province for Aquatic Animal Cultivation Engineering Lab of Henan Province for Aquatic Animal Disease Control Henan Normal University Xinxiang China.

Yong-Tao Tang (YT)

College of Fisheries Engineering Technology Research Center of Henan Province for Aquatic Animal Cultivation Engineering Lab of Henan Province for Aquatic Animal Disease Control Henan Normal University Xinxiang China.

Chang-Xing Yang (CX)

College of Fisheries Engineering Technology Research Center of Henan Province for Aquatic Animal Cultivation Engineering Lab of Henan Province for Aquatic Animal Disease Control Henan Normal University Xinxiang China.

Xiao-Lin Meng (XL)

College of Fisheries Engineering Technology Research Center of Henan Province for Aquatic Animal Cultivation Engineering Lab of Henan Province for Aquatic Animal Disease Control Henan Normal University Xinxiang China.

Guo-Xing Nie (GX)

College of Fisheries Engineering Technology Research Center of Henan Province for Aquatic Animal Cultivation Engineering Lab of Henan Province for Aquatic Animal Disease Control Henan Normal University Xinxiang China.

Classifications MeSH