Human APOBEC3 Variations and Viral Infection.


Journal

Viruses
ISSN: 1999-4915
Titre abrégé: Viruses
Pays: Switzerland
ID NLM: 101509722

Informations de publication

Date de publication:
14 07 2021
Historique:
received: 11 05 2021
revised: 07 07 2021
accepted: 08 07 2021
entrez: 10 8 2021
pubmed: 11 8 2021
medline: 18 9 2021
Statut: epublish

Résumé

Human APOBEC3 (apolipoprotein B mRNA-editing catalytic polypeptide-like 3) enzymes are capable of inhibiting a wide range of endogenous and exogenous viruses using deaminase and deaminase-independent mechanisms. These enzymes are essential components of our innate immune system, as evidenced by (a) their strong positive selection and expansion in primates, (b) the evolution of viral counter-defense mechanisms, such as proteasomal degradation mediated by HIV Vif, and (c) hypermutation and inactivation of a large number of integrated HIV-1 proviruses. Numerous APOBEC3 single nucleotide polymorphisms, haplotypes, and splice variants have been identified in humans. Several of these variants have been reported to be associated with differential antiviral immunity. This review focuses on the current knowledge in the field about these natural variations and their roles in infectious diseases.

Identifiants

pubmed: 34372572
pii: v13071366
doi: 10.3390/v13071366
pmc: PMC8310219
pii:
doi:

Substances chimiques

Protein Isoforms 0
Cytosine Deaminase EC 3.5.4.1
APOBEC Deaminases EC 3.5.4.5
APOBEC3 proteins, human EC 3.5.4.5
Cytidine Deaminase EC 3.5.4.5

Types de publication

Journal Article Research Support, N.I.H., Extramural Review

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : NIAID NIH HHS
ID : R21 AI138793
Pays : United States

Références

Mod Pathol. 2021 Feb;34(2):280-290
pubmed: 32632179
AIDS. 2006 Oct 3;20(15):1984-6
pubmed: 16988524
J Biol Chem. 2006 Aug 4;281(31):22161-22172
pubmed: 16735504
PLoS Pathog. 2011 Sep;7(9):e1002221
pubmed: 21966267
Trends Biochem Sci. 2007 Mar;32(3):118-28
pubmed: 17303427
Nucleic Acids Res. 2014 Jan;42(1):396-416
pubmed: 24101588
Nat Genet. 2013 Sep;45(9):970-6
pubmed: 23852170
J Virol. 2011 Aug;85(15):7594-602
pubmed: 21632763
Nature. 2002 Aug 8;418(6898):646-50
pubmed: 12167863
Nat Chem. 2014 Jan;6(1):28-33
pubmed: 24345943
J Gen Virol. 2007 Feb;88(Pt 2):432-440
pubmed: 17251560
Gene. 2007 Apr 1;390(1-2):199-205
pubmed: 17079095
Virology. 2005 Sep 1;339(2):281-8
pubmed: 15993456
J Virol. 2008 Jul;82(13):6585-90
pubmed: 18434399
Front Microbiol. 2016 Dec 19;7:2027
pubmed: 28066353
Viruses. 2020 May 27;12(6):
pubmed: 32471198
Microb Pathog. 2018 Aug;121:325-330
pubmed: 29864532
Philos Trans R Soc Lond B Biol Sci. 2009 Mar 12;364(1517):675-87
pubmed: 19038776
AIDS Res Hum Retroviruses. 2011 Feb;27(2):137-41
pubmed: 20874421
World J Gastroenterol. 2006 Jul 28;12(28):4492-7
pubmed: 16874860
Science. 2004 Mar 19;303(5665):1829
pubmed: 15031497
Proc Natl Acad Sci U S A. 2008 Apr 8;105(14):5501-6
pubmed: 18391217
APMIS. 2016 Oct;124(10):881-7
pubmed: 27522954
Trends Biochem Sci. 2016 Jul;41(7):578-594
pubmed: 27283515
Hum Immunol. 2011 Mar;72(3):207-12
pubmed: 21167246
AIDS Res Hum Retroviruses. 2012 Jun;28(6):619-27
pubmed: 22145963
PLoS Genet. 2007 Apr 20;3(4):e63
pubmed: 17447845
J Mol Biol. 2019 Mar 29;431(7):1339-1352
pubmed: 30797859
Viruses. 2021 Mar 17;13(3):
pubmed: 33802945
Cell Host Microbe. 2008 Sep 11;4(3):249-59
pubmed: 18779051
J Virol. 2021 May 24;95(12):
pubmed: 33789992
Nucleic Acids Res. 2006;34(19):5683-94
pubmed: 17038330
Proc Natl Acad Sci U S A. 2006 Jun 6;103(23):8780-5
pubmed: 16728505
PLoS Pathog. 2012;8(7):e1002800
pubmed: 22807680
J Clin Virol. 2015 Sep;70:67-71
pubmed: 26305823
Virology. 2013 Sep 1;443(2):329-37
pubmed: 23755966
Nat Commun. 2020 Jan 31;11(1):632
pubmed: 32005813
Front Microbiol. 2011 Dec 21;2:258
pubmed: 22203821
J Virol. 2013 Feb;87(3):1508-17
pubmed: 23152537
PLoS Genet. 2016 Mar 04;12(3):e1005921
pubmed: 26942578
J Virol. 2011 Aug;85(16):8197-207
pubmed: 21653666
J Acquir Immune Defic Syndr. 2013 Feb 1;62(2):197-203
pubmed: 23138837
Retrovirology. 2018 Dec 17;15(1):78
pubmed: 30558640
Virus Evol. 2019 Feb 11;5(1):vey040
pubmed: 30792902
Retrovirology. 2008 Aug 14;5:75
pubmed: 18702815
J Mol Biol. 2014 Mar 20;426(6):1220-45
pubmed: 24189052
Nat Rev Immunol. 2004 Nov;4(11):868-77
pubmed: 15516966
Virology. 2019 Nov;537:104-109
pubmed: 31493648
J Virol. 2006 Dec;80(23):11710-22
pubmed: 16971427
J Virol. 2013 Jan;87(1):444-53
pubmed: 23097438
PLoS Pathog. 2014 Jul 31;10(7):e1004281
pubmed: 25080100
Nat Microbiol. 2018 Feb;3(2):220-233
pubmed: 29158605
Biochem Biophys Res Commun. 2019 Oct 8;518(1):26-31
pubmed: 31400856
Nat Microbiol. 2019 Jan;4(1):78-88
pubmed: 30420783
PLoS One. 2013;8(2):e57744
pubmed: 23469063
AIDS. 2010 Sep 24;24(15):2313-21
pubmed: 20729708
Proc Natl Acad Sci U S A. 2005 Jun 7;102(23):8321-6
pubmed: 15919829
Front Microbiol. 2021 Jan 12;11:622012
pubmed: 33510734
PLoS Genet. 2014 Nov 20;10(11):e1004761
pubmed: 25411794
J Immunol. 2015 Nov 15;195(10):4565-70
pubmed: 26546688
PLoS One. 2016 Jan 07;11(1):e0146386
pubmed: 26741797
J Mol Biol. 2016 Nov 20;428(23):4626-4638
pubmed: 27534815
PLoS Pathog. 2016 Oct 12;12(10):e1005865
pubmed: 27732658
J Virol. 2011 Apr;85(7):3142-52
pubmed: 21270145
PLoS Pathog. 2017 May 5;13(5):e1006348
pubmed: 28475648
J Virol. 2009 Sep;83(18):9474-85
pubmed: 19587057
Proc Natl Acad Sci U S A. 2020 Jan 7;117(1):610-618
pubmed: 31843890
Genet Test. 2008 Sep;12(3):453-6
pubmed: 18652534
Retrovirology. 2008 Jun 24;5:51
pubmed: 18577210
PLoS Pathog. 2020 Aug 14;16(8):e1008718
pubmed: 32797103
Antiviral Res. 2018 Jan;149:16-25
pubmed: 29129707
J Virol. 2009 Jan;83(1):295-303
pubmed: 18945781
PLoS Biol. 2015 Sep 16;13(9):e1002251
pubmed: 26375597
J Viral Hepat. 2013 Oct;20(10):678-86
pubmed: 24010642
J Virol. 2019 Nov 13;93(23):
pubmed: 31534038
Virology. 2019 Jan 15;527:21-31
pubmed: 30448640
J Virol. 2006 Apr;80(8):3853-62
pubmed: 16571802
AIDS. 2009 Oct 23;23(16):2091-100
pubmed: 19710594
Nature. 2020 Feb;578(7793):94-101
pubmed: 32025018
Cell Host Microbe. 2013 Oct 16;14(4):411-21
pubmed: 24139399
J Virol. 2010 Jul;84(14):7396-404
pubmed: 20463080
Nat Commun. 2018 Oct 8;9(1):4137
pubmed: 30297863
PLoS Pathog. 2009 May;5(5):e1000439
pubmed: 19461882
J Virol. 2010 Aug;84(16):7961-9
pubmed: 20519396
J Virol. 2016 Jun 24;90(14):6379-6386
pubmed: 27147740
J Virol. 2006 Sep;80(18):9259-69
pubmed: 16940537
BMC Med Genet. 2019 Jan 19;20(1):21
pubmed: 30660178
J Hum Genet. 2016 Mar;61(3):263-5
pubmed: 26559750
AIDS Res Ther. 2017 Sep 12;14(1):44
pubmed: 28893290
Curr Biol. 2004 Aug 10;14(15):1385-91
pubmed: 15296757
Cell Host Microbe. 2018 May 9;23(5):628-635.e7
pubmed: 29746834
PLoS One. 2020 Feb 26;15(2):e0225352
pubmed: 32102090
Nat Commun. 2017 Sep 19;8(1):597
pubmed: 28928403
J Virol. 2010 Jul;84(14):7278-87
pubmed: 20463074
Viruses. 2017 Aug 21;9(8):
pubmed: 28825669
S Afr Med J. 2016 May 25;106(6 Suppl 1):S119-23
pubmed: 27245545
Annu Rev Immunol. 2008;26:317-53
pubmed: 18304004
J Infect Dis. 2010 Sep 1;202(5):815-6; author reply 816-7
pubmed: 20684727
Int J Med Sci. 2018 Jan 1;15(2):95-100
pubmed: 29333092
APMIS. 2016 May;124(5):401-5
pubmed: 26853443
Nat Commun. 2020 Feb 14;11(1):886
pubmed: 32060290
J Virol. 2015 Jan;89(1):688-702
pubmed: 25355878
PLoS Pathog. 2009 May;5(5):e1000414
pubmed: 19424423
J Infect Dis. 2009 Oct 1;200(7):1054-8
pubmed: 19698078
J Virol. 2016 Aug 12;90(17):8005-12
pubmed: 27356895
PLoS Biol. 2004 Sep;2(9):E275
pubmed: 15269786
J Virol. 2014 Nov;88(21):12882-94
pubmed: 25165112
PLoS Pathog. 2014 Oct 16;10(10):e1004453
pubmed: 25330146
PLoS Pathog. 2005 Sep;1(1):e6
pubmed: 16201018
J Virol. 2004 Oct;78(20):11070-6
pubmed: 15452227
J Virol. 2013 Jul;87(14):8195-204
pubmed: 23698293
J Virol. 2010 Feb;84(4):1902-11
pubmed: 19939923
J Gen Virol. 2015 Sep;96(9):2878-2887
pubmed: 26048885
Virology. 2015 May;479-480:131-45
pubmed: 25818029
J Virol. 2020 Feb 14;94(5):
pubmed: 31801862
PLoS Pathog. 2009 Apr;5(4):e1000367
pubmed: 19343218
J Virol. 2011 Nov;85(21):11220-34
pubmed: 21835787
Viruses. 2021 Jan 17;13(1):
pubmed: 33477360
Retrovirology. 2005 May 19;2:32
pubmed: 15943885
J Biol Chem. 2007 Jan 26;282(4):2587-95
pubmed: 17121840
Virology. 2005 Mar 15;333(2):374-86
pubmed: 15721369
BMC Infect Dis. 2016 Jul 22;16:336
pubmed: 27449138
PLoS Pathog. 2014 Mar 20;10(3):e1004024
pubmed: 24651717
J Infect Dis. 2005 Jan 15;191(2):159-63
pubmed: 15609224
J Virol. 2012 Apr;86(7):3777-86
pubmed: 22301159
Nature. 2013 Aug 22;500(7463):415-21
pubmed: 23945592
PLoS Pathog. 2016 May 17;12(5):e1005646
pubmed: 27186986
Curr Biol. 2006 Mar 7;16(5):480-5
pubmed: 16527742
ACS Infect Dis. 2018 Mar 9;4(3):224-238
pubmed: 29347817
Virology. 2007 Aug 1;364(2):486-93
pubmed: 17434555
Viruses. 2020 Mar 30;12(4):
pubmed: 32235597
AIDS. 2010 Jan 16;24(2):195-204
pubmed: 19996938
AIDS. 2016 Jul 17;30(11):1723-9
pubmed: 27064995
Heliyon. 2019 Apr 16;5(4):e01498
pubmed: 31025011
Retrovirology. 2006 Feb 07;3:11
pubmed: 16460575
Oncotarget. 2017 Jul 19;8(44):76357-76374
pubmed: 29100317
C R Biol. 2006 Nov;329(11):871-5
pubmed: 17067930
J Virol. 2016 Apr 14;90(9):4681-4695
pubmed: 26912618
J Biol Chem. 2010 Sep 17;285(38):29326-35
pubmed: 20624919
Nucleic Acids Res. 2007;35(21):7096-108
pubmed: 17942420
PLoS One. 2014 Jan 31;9(1):e87679
pubmed: 24498164
PLoS One. 2014 Mar 25;9(3):e92861
pubmed: 24667791
J Virol. 2008 Sep;82(17):8743-61
pubmed: 18562517
Antimicrob Agents Chemother. 2015 Aug;59(8):4870-81
pubmed: 26055363
J Virol. 2012 Jan;86(1):49-59
pubmed: 22013041
Microorganisms. 2020 Nov 30;8(12):
pubmed: 33266042
Infect Genet Evol. 2011 Aug;11(6):1256-62
pubmed: 21571098
PLoS One. 2013 May 23;8(5):e64196
pubmed: 23717565
Immunogenetics. 2015 Apr;67(4):253-7
pubmed: 25721876
J Virol. 2017 Jan 18;91(3):
pubmed: 27881650
J Virol. 2010 May;84(10):5250-9
pubmed: 20219927
Hepatol Res. 2009 Dec;39(12):1159-68
pubmed: 19788695
J Virol. 2007 Oct;81(20):11322-31
pubmed: 17670826
Nucleic Acids Res. 2010 Jul;38(13):4274-84
pubmed: 20308164
Viruses. 2021 Feb 28;13(3):
pubmed: 33671095

Auteurs

Shiva Sadeghpour (S)

Department of Biological Science, University of California Irvine, Irvine, CA 92697, USA.

Saeideh Khodaee (S)

Department of Bioinformatics, Institute of Biochemistry and Biophysics, University of Tehran, Tehran 1417614335, Iran.

Mostafa Rahnama (M)

Department of Plant Pathology, University of Kentucky, Lexington, KY 40546, USA.

Hamzeh Rahimi (H)

Department of Molecular Medicine, Biotechnology Research Center, Pasteur Institute of Iran, Tehran 1316943551, Iran.

Diako Ebrahimi (D)

Texas Biomedical Research Institute, San Antonio, TX 78227, USA.

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