Ancient DNA reveals multiple origins and migration waves of extinct Japanese brown bear lineages.

Pleistocene megafauna ancient DNA brown bear mitochondrial genomes

Journal

Royal Society open science
ISSN: 2054-5703
Titre abrégé: R Soc Open Sci
Pays: England
ID NLM: 101647528

Informations de publication

Date de publication:
Aug 2021
Historique:
received: 02 04 2021
accepted: 08 07 2021
entrez: 13 8 2021
pubmed: 14 8 2021
medline: 14 8 2021
Statut: epublish

Résumé

Little is known about how mammalian biogeography on islands was affected by sea-level fluctuations. In the Japanese Archipelago, brown bears (

Identifiants

pubmed: 34386259
doi: 10.1098/rsos.210518
pii: rsos210518
pmc: PMC8334828
doi:

Banques de données

figshare
['10.6084/m9.figshare.c.5525200']

Types de publication

Journal Article

Langues

eng

Pagination

210518

Informations de copyright

© 2021 The Authors.

Références

Mol Biol Evol. 2017 Mar 1;34(3):772-773
pubmed: 28013191
Bioinformatics. 2009 Jul 15;25(14):1754-60
pubmed: 19451168
Proc Natl Acad Sci U S A. 2013 Sep 24;110(39):15758-63
pubmed: 24019490
Proc Biol Sci. 2017 Dec 13;284(1868):
pubmed: 29187630
Mol Phylogenet Evol. 1996 Jun;5(3):477-94
pubmed: 8744762
BMC Evol Biol. 2007 Nov 08;7:214
pubmed: 17996036
Sci Rep. 2015 Jun 17;5:11184
pubmed: 26081994
Science. 2009 Aug 7;325(5941):710-4
pubmed: 19661421
Nature. 2015 Jun 11;522(7555):167-72
pubmed: 26062507
Brief Bioinform. 2013 Mar;14(2):178-92
pubmed: 22517427
Mol Biol Evol. 2013 Apr;30(4):772-80
pubmed: 23329690
Science. 2002 Mar 22;295(5563):2267-70
pubmed: 11910112
Proc Natl Acad Sci U S A. 2008 Nov 11;105(45):17447-52
pubmed: 18955696
Mol Biol Evol. 1999 May;16(5):676-84
pubmed: 10335661
Bioinformatics. 2018 Sep 1;34(17):i884-i890
pubmed: 30423086
Mol Biol Evol. 2013 Jul;30(7):1644-52
pubmed: 23619144
Am J Hum Genet. 2008 Apr;82(4):895-902
pubmed: 18371929
PLoS One. 2015 Sep 25;10(9):e0136398
pubmed: 26406587
Nucleic Acids Res. 2017 Jun 20;45(11):6310-6320
pubmed: 28486705
Bioinformatics. 2013 Jul 01;29(13):1682-4
pubmed: 23613487
PLoS One. 2016 Oct 5;11(10):e0163962
pubmed: 27706213
Nat Methods. 2012 Mar 04;9(4):357-9
pubmed: 22388286
Nature. 2013 Jul 4;499(7456):74-8
pubmed: 23803765
Sci Rep. 2019 Mar 14;9(1):4462
pubmed: 30872771
Proc Biol Sci. 2012 Dec 7;279(1748):4724-33
pubmed: 23055061
Mol Biol Evol. 2018 Feb 1;35(2):518-522
pubmed: 29077904
Mol Biol Evol. 2015 Jan;32(1):268-74
pubmed: 25371430
Nature. 2005 Sep 1;437(7055):125-8
pubmed: 16136140
Proc Natl Acad Sci U S A. 2015 Oct 27;112(43):13296-301
pubmed: 26371302
Mol Ecol. 2006 Dec;15(14):4477-85
pubmed: 17107477
Genome Biol Evol. 2019 Dec 1;11(12):3341-3352
pubmed: 31536115
Nat Methods. 2017 Jun;14(6):587-589
pubmed: 28481363

Auteurs

Takahiro Segawa (T)

Center for Life Science Research, University of Yamanashi, 1110 Shimokato, Chuo, Yamanashi, Japan.

Takahiro Yonezawa (T)

Tokyo University of Agriculture, 1737 Funako, Atsugi City, Kanagawa, Japan.

Hiroshi Mori (H)

National Institute of Genetics, Yata 1111, Mishima City, Shizuoka, Japan.

Ayumi Akiyoshi (A)

National Institute of Polar Research, Midori-cho 10-3, Tachikawa City, Tokyo, Japan.

Morten E Allentoft (ME)

Trace and Environmental DNA (TrEnD) Laboratory, School of Molecular and Life Sciences, Curtin University, Bentley, Western Australia 6102, Australia.
Lundbeck Foundation GeoGenetics Centre, Globe Institute, University of Copenhagen, Copenhagen, Denmark.

Ayako Kohno (A)

Department of Geology and Paleontology, National Museum of Nature and Science, Tokyo, Amakubo, Tsukuba, Ibaraki, Japan.

Fuyuki Tokanai (F)

Faculty of Science, Yamagata University, Jonan 4-3-16, Yonezawa City, Yamagata 990-3101, Japan.

Eske Willerslev (E)

Lundbeck Foundation GeoGenetics Centre, Globe Institute, University of Copenhagen, Copenhagen, Denmark.
Department of Zoology, University of Cambridge, Cambridge, UK.
Wellcome Trust Sanger Institute, Hinxton, UK.

Naoki Kohno (N)

Department of Geology and Paleontology, National Museum of Nature and Science, Tokyo, Amakubo, Tsukuba, Ibaraki, Japan.
Graduate School of Life and Environmental Sciences, University of Tsukuba, Tennoudai, Tsukuba, Ibaraki, Japan.

Hidenori Nishihara (H)

School of Life Science and Technology, Tokyo Institute of Technology, 4259-S2-17 Nagatsuta-cho, Midori-ku, Yokohama 226-8501, Japan.

Classifications MeSH