Cocultivation of Anaerobic Fungi with Rumen Bacteria Establishes an Antagonistic Relationship.

Anaerobiosis Animals Antibiosis Bacteria / classification Fungi / classification Gene Expression Profiling Genome, Bacterial Genome, Fungal Microbiological Techniques Rumen / microbiology Sheep / microbiology
RNA-seq anaerobe anaerobic fungi cocultivation fungi secondary metabolism transcriptomics

Journal

mBio
ISSN: 2150-7511
Titre abrégé: mBio
Pays: United States
ID NLM: 101519231

Informations de publication

Date de publication:
31 08 2021
Historique:
pubmed: 18 8 2021
medline: 6 1 2022
entrez: 17 8 2021
Statut: ppublish

Résumé

Anaerobic gut fungi (Neocallimastigomycetes) live in the digestive tract of large herbivores, where they are vastly outnumbered by bacteria. It has been suggested that anaerobic fungi challenge growth of bacteria owing to the wealth of biosynthetic genes in fungal genomes, although this relationship has not been experimentally tested. Here, we cocultivated the rumen bacteria

Identifiants

DOI: 10.1128/mBio.01442-21 PMID: 34399620 PMC: PMC8406330
pubmed: 34399620
doi: 10.1128/mBio.01442-21
pmc: PMC8406330
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Pagination

e0144221

Références

Nat Struct Biol. 1999 Jan;6(1):56-63
pubmed: 9886293
Fungal Genet Biol. 2020 Jun;139:103383
pubmed: 32272219
J Gen Microbiol. 1991 Jun;137(6):1401-8
pubmed: 1919514
Nucleic Acids Res. 2013 Jan;41(Database issue):D590-6
pubmed: 23193283
Nat Methods. 2019 Apr;16(4):299-302
pubmed: 30886413
Nat Biotechnol. 2016 Aug 9;34(8):828-837
pubmed: 27504778
J Biol Chem. 1998 Aug 28;273(35):22773-81
pubmed: 9712910
Sci Rep. 2018 Jan 10;8(1):297
pubmed: 29321512
Nat Methods. 2015 Apr;12(4):357-60
pubmed: 25751142
PLoS One. 2007 Oct 03;2(10):e970
pubmed: 17912349
Genome Biol. 2004;5(2):R7
pubmed: 14759257
J Nat Prod. 2011 Jul 22;74(7):1653-7
pubmed: 21667925
EMBO J. 2002 May 1;21(9):2231-41
pubmed: 11980720
Science. 2006 Jun 2;312(5778):1396-9
pubmed: 16741124
Anal Chem. 2017 Sep 5;89(17):8696-8703
pubmed: 28752754
Fungal Genet Biol. 2017 May;102:4-21
pubmed: 27150814
Res Microbiol. 2018 Sep - Oct;169(7-8):425-431
pubmed: 29128373
Bioinformatics. 2014 Apr 1;30(7):923-30
pubmed: 24227677
FEMS Microbiol Lett. 2017 Aug 15;364(15):
pubmed: 28859317
Nat Rev Genet. 2012 Apr 03;13(5):343-57
pubmed: 22473383
mSphere. 2018 Dec 12;3(6):
pubmed: 30541780
G3 (Bethesda). 2013 Feb;3(2):369-78
pubmed: 23390613
Science. 2018 Sep 21;361(6408):
pubmed: 30237322
Mol Microbiol. 2010 Jun;76(6):1376-86
pubmed: 20132440
Science. 2001 Aug 10;293(5532):1074-80
pubmed: 11498575
Mol Plant Pathol. 2006 Jul;7(4):285-301
pubmed: 20507448
Bioinformatics. 2012 Dec 15;28(24):3211-7
pubmed: 23071270
Science. 2015 Nov 6;350(6261):663-6
pubmed: 26542567
Proc Natl Acad Sci U S A. 2009 Jan 20;106(3):894-9
pubmed: 19124776
Nat Commun. 2018 Jan 2;9(1):31
pubmed: 29295978
Genome Biol. 2014;15(12):550
pubmed: 25516281
Front Microbiol. 2019 Mar 06;10:435
pubmed: 30894845
Crit Rev Food Sci Nutr. 2019;59(9):1498-1513
pubmed: 29336595
J Ind Microbiol Biotechnol. 2019 Oct;46(9-10):1427-1433
pubmed: 31089985
Nat Commun. 2018 Oct 2;9(1):4035
pubmed: 30279420
Biochim Biophys Acta. 2009 May;1794(5):769-81
pubmed: 19026770
Curr Microbiol. 2002 Jul;45(1):46-53
pubmed: 12029527
BMC Bioinformatics. 2007 Mar 05;8:72
pubmed: 17335588
Nat Protoc. 2011 Jun;6(6):743-60
pubmed: 21637195
Proc Natl Acad Sci U S A. 2009 Aug 25;106(34):14558-63
pubmed: 19666480
Eukaryot Cell. 2007 Sep;6(9):1656-64
pubmed: 17616629
Eur J Biochem. 2001 Oct;268(19):5011-26
pubmed: 11589692
Nat Chem Biol. 2009 Jul;5(7):462-4
pubmed: 19448638
Nucleic Acids Res. 2003 Jan 1;31(1):439-41
pubmed: 12520045
Nucleic Acids Res. 2019 Jan 8;47(D1):D351-D360
pubmed: 30398656
Science. 2015 Jan 2;347(6217):63-7
pubmed: 25554784
Genome Res. 2003 Nov;13(11):2498-504
pubmed: 14597658
Eukaryot Cell. 2004 Apr;3(2):527-35
pubmed: 15075281
Bioinformatics. 2006 Nov 1;22(21):2581-4
pubmed: 16895922
Fungal Genet Biol. 2012 Jan;49(1):39-47
pubmed: 22100541
Nat Microbiol. 2017 May 30;2:17087
pubmed: 28555641
Biotechnol Biofuels. 2017 Dec 20;10:305
pubmed: 29270219
Nucleic Acids Res. 2014 Jan;42(Database issue):D699-704
pubmed: 24297253
Proc Natl Acad Sci U S A. 2005 Oct 25;102(43):15545-50
pubmed: 16199517
Appl Environ Microbiol. 2000 Jul;66(7):2921-7
pubmed: 10877787
Nucleic Acids Res. 2019 Jan 8;47(D1):D666-D677
pubmed: 30289528
BMC Bioinformatics. 2005 Jul 18;6:179
pubmed: 16026613
Nat Methods. 2020 Sep;17(9):905-908
pubmed: 32839597
Nature. 2016 Dec 8;540(7632):280-283
pubmed: 27798599
Biochim Biophys Acta Mol Cell Biol Lipids. 2017 Nov;1862(11):1404-1413
pubmed: 27956138
Appl Environ Microbiol. 2001 Apr;67(4):1607-12
pubmed: 11282612
Curr Opin Chem Biol. 2011 Apr;15(2):328-34
pubmed: 21277822
Science. 2016 Mar 11;351(6278):1192-5
pubmed: 26912365
FEMS Microbiol Rev. 2012 Jan;36(1):1-24
pubmed: 21658084
Fungal Genet Biol. 2012 Aug;49(8):602-12
pubmed: 22713715
Mol Plant Microbe Interact. 2000 Apr;13(4):374-83
pubmed: 10755300
Nature. 2004 Mar 25;428(6981):412-4
pubmed: 15042087
Nature. 2002 Jul 11;418(6894):171-4
pubmed: 12110887
Proc Natl Acad Sci U S A. 2021 May 4;118(18):
pubmed: 33906945
Bioinformatics. 2006 Mar 1;22(5):634-6
pubmed: 16403790
Curr Protoc Bioinformatics. 2019 Dec;68(1):e86
pubmed: 31756036
J Mol Biol. 1990 Oct 5;215(3):403-10
pubmed: 2231712
J Gen Microbiol. 1993 Jun;139 Pt 6:1395-400
pubmed: 8360630
Nucleic Acids Res. 2015 Jul 1;43(W1):W251-7
pubmed: 25897128

Auteurs

Candice L Swift (CL)

Department of Chemical Engineering, University of California Santa Barbara, Santa Barbara, California, USA.

Katherine B Louie (KB)

U.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratorygrid.184769.5, Berkeley, California, USA.

Benjamin P Bowen (BP)

U.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratorygrid.184769.5, Berkeley, California, USA.

Casey A Hooker (CA)

Department of Agricultural & Biological Engineering, Purdue University, West Lafayette, Indiana, USA.

Kevin V Solomon (KV)

Department of Agricultural & Biological Engineering, Purdue University, West Lafayette, Indiana, USA.

Vasanth Singan (V)

U.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratorygrid.184769.5, Berkeley, California, USA.

Chris Daum (C)

U.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratorygrid.184769.5, Berkeley, California, USA.

Christa P Pennacchio (CP)

U.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratorygrid.184769.5, Berkeley, California, USA.

Kerrie Barry (K)

U.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratorygrid.184769.5, Berkeley, California, USA.

Vaithiyalingam Shutthanandan (V)

Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratorygrid.451303.0, Richland, Washington, USA.

James E Evans (JE)

Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratorygrid.451303.0, Richland, Washington, USA.

Igor V Grigoriev (IV)

U.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratorygrid.184769.5, Berkeley, California, USA.
Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratorygrid.184769.5, Berkeley, California, USA.
Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, California, USA.

Trent R Northen (TR)

U.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratorygrid.184769.5, Berkeley, California, USA.
Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratorygrid.184769.5, Berkeley, California, USA.
Joint BioEnergy Institute (JBEI), Emeryville, California, USA.

Michelle A O'Malley (MA)

Department of Chemical Engineering, University of California Santa Barbara, Santa Barbara, California, USA.
Joint BioEnergy Institute (JBEI), Emeryville, California, USA.

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Classifications MeSH

questionsmedicales.fr › Métabolisme › Anaérobiose › Cocultivation of Anaerobic Fungi with Rumen...
questionsmedicales.fr › Eucaryotes › Animaux › Cocultivation of Anaerobic Fungi with Rumen...
questionsmedicales.fr › Phénomènes biologiques › Antibiose › Cocultivation of Anaerobic Fungi with Rumen...
questionsmedicales.fr › Bactéries › Cocultivation of Anaerobic Fungi with Rumen...
questionsmedicales.fr › Eucaryotes › Champignons › Cocultivation of Anaerobic Fungi with Rumen...
questionsmedicales.fr › Techniques d'investigation › Techniques génétiques › Analyse de profil d'expression de gènes › Cocultivation of Anaerobic Fungi with Rumen...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Génome microbien › Génome bactérien › Cocultivation of Anaerobic Fungi with Rumen...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Génome microbien › Génome fongique › Cocultivation of Anaerobic Fungi with Rumen...
questionsmedicales.fr › Techniques d'investigation › Techniques de laboratoire clinique › Techniques microbiologiques › Cocultivation of Anaerobic Fungi with Rumen...
questionsmedicales.fr › Structures anatomiques de l'animal › Estomac de ruminant › Rumen › Cocultivation of Anaerobic Fungi with Rumen...
questionsmedicales.fr › Eucaryotes › Animaux › Chordés › Vertébrés › Mammifères › Eutheria › Artiodactyla › Ruminants › Ovis › Cocultivation of Anaerobic Fungi with Rumen...