Hi-C Data Formats.
4D nucleome
Bioinformatics
Data formats
Hi-C
Software
Journal
Methods in molecular biology (Clifton, N.J.)
ISSN: 1940-6029
Titre abrégé: Methods Mol Biol
Pays: United States
ID NLM: 9214969
Informations de publication
Date de publication:
2022
2022
Historique:
entrez:
20
8
2021
pubmed:
21
8
2021
medline:
12
1
2022
Statut:
ppublish
Résumé
Processing, storing, and visualizing high-resolution Hi-C data required development of efficient data formats. A sparse matrix format saving only nonzero values has become the norm. A "zoomable" matrix style also became popular, storing multiple resolutions in a single file for interactive visualization. This chapter discusses the latest matrix file formats such as .hic and .mcool, and other intermediate formats including SAM/BAM and random-accessible contact lists.
Identifiants
pubmed: 34415533
doi: 10.1007/978-1-0716-1390-0_6
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
133-141Informations de copyright
© 2022. Springer Science+Business Media, LLC, part of Springer Nature.
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