Data-driven prediction of decannulation probability and timing in patients with severe acquired brain injury.

Decannulation Disorder of consciousness Machine learning Prognostic models Rehabilitation Severe acquired brain injuries

Journal

Computer methods and programs in biomedicine
ISSN: 1872-7565
Titre abrégé: Comput Methods Programs Biomed
Pays: Ireland
ID NLM: 8506513

Informations de publication

Date de publication:
Sep 2021
Historique:
received: 20 05 2021
accepted: 02 08 2021
pubmed: 23 8 2021
medline: 15 9 2021
entrez: 22 8 2021
Statut: ppublish

Résumé

From a rehabilitation perspective, removal of tracheostomy in patients with severe acquired brain injuries (sABI) is a crucial step. Predictive parameters for a successful decannulation are currently still a focus of the research for sABI patients, especially for those presenting a disorder of consciousness. For this reason, we adopted a data-driven approach predicting decannulation probability and timing using ensemble learning models in patients in intensive rehabilitation units. 327 patients, 186 of which were successfully decannulated during their intensive rehabilitative stay, were recruited in a non-concurrent retrospective study. Decannulation probability and timing were predicted using data available within one week from admission at the rehabilitation unit. Two predictive models were trained and cross-validated independently, with the first being an ensemble of a Support Vector Machine and Random Forests and the second an Adaptive Boosting with a Support Vector Regression as weak learner. Confusion matrix, accuracy and AUC were considered as evaluation metrics for the classifier and median absolute error was considered for the regressor. To quantify the advantages in the clinical practice of using the latter prediction, we compared timing estimation with a timing guess (median) calculated on available data. The comparison was based on a Wilcoxon signed rank test. Decannulation probability was successfully predicted with an accuracy of 84.8% (AUC = 0.85) and timing with a median absolute error of 25.7 days [IQR = 25.6]. This resulted in a significant improvement with respect to the weaning time guess (p<0.05) with an effect size of 71.7%. Furthermore, dichotomizing the regression prediction with a threshold (3 months from the event), resulted in a prediction accuracy of 77.5% (AUC = 0.82) on the test set. A model capable of providing a prediction on decannulation probability and timing was developed and cross-validated, built on data taken at admission to the intensive rehabilitation unit. Translated in clinical practice, this information can support the clinical decision process and provide a mean to improve both in-hospital and domiciliary care organization.

Sections du résumé

BACKGROUND AND OBJECTIVES OBJECTIVE
From a rehabilitation perspective, removal of tracheostomy in patients with severe acquired brain injuries (sABI) is a crucial step. Predictive parameters for a successful decannulation are currently still a focus of the research for sABI patients, especially for those presenting a disorder of consciousness. For this reason, we adopted a data-driven approach predicting decannulation probability and timing using ensemble learning models in patients in intensive rehabilitation units.
METHODS METHODS
327 patients, 186 of which were successfully decannulated during their intensive rehabilitative stay, were recruited in a non-concurrent retrospective study. Decannulation probability and timing were predicted using data available within one week from admission at the rehabilitation unit. Two predictive models were trained and cross-validated independently, with the first being an ensemble of a Support Vector Machine and Random Forests and the second an Adaptive Boosting with a Support Vector Regression as weak learner. Confusion matrix, accuracy and AUC were considered as evaluation metrics for the classifier and median absolute error was considered for the regressor. To quantify the advantages in the clinical practice of using the latter prediction, we compared timing estimation with a timing guess (median) calculated on available data. The comparison was based on a Wilcoxon signed rank test.
RESULTS RESULTS
Decannulation probability was successfully predicted with an accuracy of 84.8% (AUC = 0.85) and timing with a median absolute error of 25.7 days [IQR = 25.6]. This resulted in a significant improvement with respect to the weaning time guess (p<0.05) with an effect size of 71.7%. Furthermore, dichotomizing the regression prediction with a threshold (3 months from the event), resulted in a prediction accuracy of 77.5% (AUC = 0.82) on the test set.
DISCUSSIONS CONCLUSIONS
A model capable of providing a prediction on decannulation probability and timing was developed and cross-validated, built on data taken at admission to the intensive rehabilitation unit. Translated in clinical practice, this information can support the clinical decision process and provide a mean to improve both in-hospital and domiciliary care organization.

Identifiants

pubmed: 34419756
pii: S0169-2607(21)00419-3
doi: 10.1016/j.cmpb.2021.106345
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

106345

Informations de copyright

Copyright © 2021. Published by Elsevier B.V.

Déclaration de conflit d'intérêts

Declaration of Competing Interest No author has a competing interest to declare.

Auteurs

Andrea Mannini (A)

IRCCS Fondazione Don Carlo Gnocchi, via di Scandicci 269, Firenze 50134, FI, Italy; the BioRobotics Institute, Scuola Superiore Sant'Anna, Pontedera 56025, PI, Italy.

Bahia Hakiki (B)

IRCCS Fondazione Don Carlo Gnocchi, via di Scandicci 269, Firenze 50134, FI, Italy.

Piergiuseppe Liuzzi (P)

IRCCS Fondazione Don Carlo Gnocchi, via di Scandicci 269, Firenze 50134, FI, Italy; the BioRobotics Institute, Scuola Superiore Sant'Anna, Pontedera 56025, PI, Italy. Electronic address: pliuzzi@dongnocchi.it.

Silvia Campagnini (S)

IRCCS Fondazione Don Carlo Gnocchi, via di Scandicci 269, Firenze 50134, FI, Italy; the BioRobotics Institute, Scuola Superiore Sant'Anna, Pontedera 56025, PI, Italy.

Annamaria Romoli (A)

IRCCS Fondazione Don Carlo Gnocchi, via di Scandicci 269, Firenze 50134, FI, Italy.

Francesca Draghi (F)

IRCCS Fondazione Don Carlo Gnocchi, via di Scandicci 269, Firenze 50134, FI, Italy.

Claudio Macchi (C)

IRCCS Fondazione Don Carlo Gnocchi, via di Scandicci 269, Firenze 50134, FI, Italy; Dep. of Experimental and Clinical Medicine, University of Florence, Piazza S. Marco 4, Firenze 50121, FI, Italy.

Maria Chiara Carrozza (MC)

the BioRobotics Institute, Scuola Superiore Sant'Anna, Pontedera 56025, PI, Italy.

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Classifications MeSH