Effect of oxygen concentrations and branched-chain amino acids on the growth and development of sub-seafloor fungus, Schizophyllum commune 20R-7-F01.
Journal
Environmental microbiology
ISSN: 1462-2920
Titre abrégé: Environ Microbiol
Pays: England
ID NLM: 100883692
Informations de publication
Date de publication:
11 2021
11 2021
Historique:
revised:
18
08
2021
received:
11
04
2021
accepted:
22
08
2021
pubmed:
26
8
2021
medline:
18
3
2022
entrez:
25
8
2021
Statut:
ppublish
Résumé
Fungi have been reported to be the dominant eukaryotic group in anoxic sub-seafloor sediments, but how fungi subsist in the anoxic sub-marine sedimental environment is rarely understood. Our previous study demonstrated that the fungus, Schizophyllum commune 20R-7-F01 isolated from a ~2 km sediment below the seafloor, can grow and produce primordia in the complete absence of oxygen with enhanced production of branched-chain amino acids (BCAAs), but the primordia cannot be developed into fruit bodies without oxygen. Here, we present the individual and synergistic effects of oxygen and BCAAs on the fruit-body development of this strain. It was found that the fungus required a minimum oxygen concentration of 0.5% pO
Identifiants
pubmed: 34431210
doi: 10.1111/1462-2920.15738
doi:
Substances chimiques
Amino Acids, Branched-Chain
0
Oxygen
S88TT14065
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
6940-6952Informations de copyright
© 2021 Society for Applied Microbiology and John Wiley & Sons Ltd.
Références
Braun, S., Snehit, S.M., Marion, J., Hans, R., Kasper, U., & Kjeldsen, C.P. (2017). Microbial turnover times in the deep seabed studied by amino acid racemization modelling. Scientific Reports, 7: 5680.
Du, Y., Hong, L., Tang, W., Li, L., Wang, X., Ma, H., et al. (2014) Threonine deaminase MoIlv1 is important for conidiogenesis and pathogenesis in the rice blast fungus Magnaporthe oryzae. Fungal Genet Biol 73: 53-60.
Gold, D.A., Caron, A., Fournier, G.P., and Summons, R.E. (2017) Paleoproterozoic sterol biosynthesis and the rise of oxygen. Nature 543: 420-423.
Inagaki, F., Hinrichs, K., Kubo, Y., Bowles, M., Heuer, V., Hong, W., et al. (2015) Exploring deep microbial life in coal-bearing sediment down to 2.5 km below the ocean floor. Science 349: 420-424.
Jiang, P., and Mizushima, N. (2014) Autophagy and human diseases. Cell Res 24: 69-79.
Jørgensen, B.B. (2011) Deep subseafloor microbial cells on physiological standby. PNAS 108: 18193-18194.
Kohlhaw, G. (2003) Leucine biosynthesis in fungi: entering metabolism through the back door. MMBR 67: 1-15.
Luo, F., Zhou, H., Zhou, X., Xie, X., Li, Y., Hu, F., and Huang, B. (2020) The intermediates in branched-chain amino acid biosynthesis are indispensable for conidial germination of the insect-pathogenic fungus Metarhizium robertsii. Appl Environ Microbiol 86: e01682-e01620.
Liu, C.H., Huang, X., Xie, T.N., Duan, N., Xue, Y.R., Zhao, T.X., et al. (2017) Exploration of cultivable fungal communities in deep coal-bearing sediments from ~1.3 to 2.5 km below the ocean floor. Environ Microbiol 19: 803-818.
Lyu, Y., Yang, Y., Lyu, X., Dong, N., and Shan, A. (2016) Antimicrobial activity, improved cell selectivity and mode of action of short PMAP-36-derived peptides against bacteria and Candida. Sci Rep 6: 27258.
Liu, X., Xu, J., Wang, J., Ji, F., Yin, X., and Shi, J. (2014) Involvement of threonine deaminase FgIlv1 in isoleucine biosynthesis and full virulence in Fusarium graminearum. Curr Genet 61: 55-65.
Lomstein, B.A., Langerhuus, A.T., D'Hondt, S., Jørgensen, B.B., and Spivack, A. (2012) Endospore abundance, microbial growth and necromass turnover in deep subseafloor sediment. Nature 484: 101-104.
Livak, K.J., and Schmittgen, T.D. (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCT method. Methods 25: 402-408.
MacVicar, T., Ohba, Y., Nolte, H., Mayer, F., Tatsuta, T., Sprenger, H., et al. (2019) Lipid signalling drives proteolytic rewiring of mitochondria by YME1L. Nature 575: 361-365.
Morono, Y., Terada, T., Nishizawa, M., Ito, M., Hillion, F., Takahata, N., et al. (2011) Carbon and nitrogen assimilation in deep subseafloor microbial cells. PNAS 108: 18295-18300.
Neinast, M., Murashige, D., and Arany, Z. (2019) Branched chain amino acids. Annu Rev Physiol 81: 139-164.
Nagano, Y., Konishi, M., Nagahama, T., Kubota, T., Abe, F., and Hatada, Y. (2016) Retrieval of deeply buried culturable fungi in marine subsurface sediments, Suruga-bay, Japan. Fungal Ecol 20: 256-259.
Niederberger, P., Miozzari, G., and Hütter, R. (1981) Biological role of the general control of amino acid biosynthesis in Saccharomyces cerevisiae. Mol Cell Biol 1: 584-593.
Nagata, I., Furuya, E., Yoshida, Y., Kanaseki, T., and Tagawa, K. (1975) Development of mitochondrial membranes in anaerobically grown yeast cells. J Biochem 78: 1353-1364.
Ortega-Arbulú, A., Pichler, M., Vuillemin, A., and Orsi, W. (2018) Effects of organic matter and low oxygen on the mycobenthos in a coastal lagoon. Environ Microbiol 21: 374-388.
Orsi, W. (2018) Ecology and evolution of seafloor and subseafloor microbial communities. Nat Rev Microbiol 16: 671-683.
Orsi, W.D., Richards, T.A., and Santoro, A.E. (2015) Cellular maintenance processes that potentially underpin the survival of subseafloor fungi over geological timescales. Estuar Coast Shelf Sci 164: 1-9.
Orsi, W., Biddle, J., and Edgcomb, V. (2013a) Deep sequencing of subseafloor eukaryotic rRNA reveals active fungi across marine subsurface provinces. PLoS ONE 8: 56335.
Orsi, W., Edgcomb, V., Christman, G., and Biddle, J. (2013b) Gene expression in the deep biosphere. Nature 499: 205-208.
Ohm, R., Aerts, D., Wösten, H., and Lugones, L. (2012) The blue light receptor complex WC-1/2 of Schizophyllum commune is involved in mushroom formation and protection against phototoxicity. Environ Microbiol 15: 943-955.
Ohm, R., de Jong, J., de Bekker, C., Wösten, H., and Lugones, L. (2011) Transcription factor genes of Schizophyllum commune involved in regulation of mushroom formation. Mol Microbiol 81: 1433-1445.
Ohm, R., de Jong, J., Lugones, L., Aerts, A., Kothe, E., Stajich, J., et al. (2010) Genome sequence of the model mushroom Schizophyllum commune. Nat Biotechnol 28: 957-963.
Qi, Y., Huijuan, C., Mengke, Z., Qing, W., Liyou, Q., & Jinwen, S. (2019). Identification and expression analysis of Pofst3 suggests a role during pleurotus ostreatus primordia formation. Fungal Biology, 123: 200-208.
Rédou, V., Navarri, M., Meslet-Cladière, L., Barbier, G., and Burgaud, G. (2015) Species richness and adaptation of marine fungi from deep-subseafloor sediments. Appl Environ Microbiol 81: 3571-3583.
Reggiori, F., & Klionsky, D.J. (2002). Autophagy in the eukaryotic cell. Eukaryotic Cell, 1(1): 11-21.
Sakamoto, Y. (2018) Influences of environmental factors on fruiting body induction, development and maturation in mushroom-forming fungi. Fungal Biol Rev 32: 236-248.
Schönenberger, M.J., & Kovacs, W.J. (2015) Hypoxia signaling pathways: modulators of oxygen-related organelles. Front Cell Dev Biol 3: 42.
Shingaki-Wells, R., Millar, H., Whelan, J., and Narsai, R. (2014) What happens to plant mitochondria under low oxygen? An omics review of the responses to low oxygen and reoxygenation. Plant Cell Environ 37: 2260-2277.
Selbmann, L., Egidi, E., Isola, D., Onofri, S., Zucconi, L., de Hoog, G.S., et al. (2013) Biodiversity, evolution and adaptation of fungi in extreme environments. Plant Biosyst 147: 237-246.
Shimizu, M., Fujii, T., Masuo, S., and Takaya, N. (2010) Mechanism of de novo branched-chain amino acid synthesis as an alternative electron sink in hypoxic Aspergillus nidulans cells. Appl Environ Microbiol 76: 1507-1515.
Tang, W., Jiang, H., Zheng, Q., Chen, X., Wang, R., Yang, S., et al. (2018) Isopropylmalate isomerase MoLeu1 orchestrates leucine biosynthesis, fungal development, and pathogenicity in Magnaporthe oryzae. Appl Microbiol Biotechnol 103: 327-337.
Tsukada, M., and Ohsumi, Y. (1993) Isolation and characterization of autophagy-defective mutants of Saccharomyces cerevisiae. FEBS Lett 333: 1-2.
Vödisch, M., Scherlach, K., Winkler, R., Hertweck, C., Braun, H., Roth, M., et al. (2011) Analysis of the Aspergillus fumigatus proteome reveals metabolic changes and the activation of the pseurotin a biosynthesis gene cluster in response to hypoxia. J Proteome Res 10: 2508-2524.
Zain Ul Arifeen, M., Chu, C., Yang, X., Liu, J., Huang, X., Ma, Y., et al. (2021) The anaerobic survival mechanism of Schizophyllum commune 20R-7-F01, isolated from deep sediment 2 km below the seafloor. Environ Microbiol 23: 1174-1171.