Detection of Spatiotemporal Clusters of COVID-19-Associated Symptoms and Prevention Using a Participatory Surveillance App: Protocol for the @choum Study.

COVID-19 SARS-CoV-2 digital health digital surveillance epidemiology infectious disease mHealth mobile app participatory surveillance public health space-time clustering surveillance

Journal

JMIR research protocols
ISSN: 1929-0748
Titre abrégé: JMIR Res Protoc
Pays: Canada
ID NLM: 101599504

Informations de publication

Date de publication:
06 Oct 2021
Historique:
received: 14 05 2021
accepted: 19 07 2021
revised: 18 07 2021
pubmed: 28 8 2021
medline: 28 8 2021
entrez: 27 8 2021
Statut: epublish

Résumé

The early detection of clusters of infectious diseases such as the SARS-CoV-2-related COVID-19 disease can promote timely testing recommendation compliance and help to prevent disease outbreaks. Prior research revealed the potential of COVID-19 participatory syndromic surveillance systems to complement traditional surveillance systems. However, most existing systems did not integrate geographic information at a local scale, which could improve the management of the SARS-CoV-2 pandemic. The aim of this study is to detect active and emerging spatiotemporal clusters of COVID-19-associated symptoms, and to examine (a posteriori) the association between the clusters' characteristics and sociodemographic and environmental determinants. This report presents the methodology and development of the @choum (English: "achoo") study, evaluating an epidemiological digital surveillance tool to detect and prevent clusters of individuals (target sample size, N=5000), aged 18 years or above, with COVID-19-associated symptoms living and/or working in the canton of Geneva, Switzerland. The tool is a 5-minute survey integrated into a free and secure mobile app (CoronApp-HUG). Participants are enrolled through a comprehensive communication campaign conducted throughout the 12-month data collection phase. Participants register to the tool by providing electronic informed consent and nonsensitive information (gender, age, geographically masked addresses). Symptomatic participants can then report COVID-19-associated symptoms at their onset (eg, symptoms type, test date) by tapping on the @choum button. Those who have not yet been tested are offered the possibility to be informed on their cluster status (information returned by daily automated clustering analysis). At each participation step, participants are redirected to the official COVID-19 recommendations websites. Geospatial clustering analyses are performed using the modified space-time density-based spatial clustering of applications with noise (MST-DBSCAN) algorithm. The study began on September 1, 2020, and will be completed on February 28, 2022. Multiple tests performed at various time points throughout the 5-month preparation phase have helped to improve the tool's user experience and the accuracy of the clustering analyses. A 1-month pilot study performed among 38 pharmacists working in 7 Geneva-based pharmacies confirmed the proper functioning of the tool. Since the tool's launch to the entire population of Geneva on February 11, 2021, data are being collected and clusters are being carefully monitored. The primary study outcomes are expected to be published in mid-2022. The @choum study evaluates an innovative participatory epidemiological digital surveillance tool to detect and prevent clusters of COVID-19-associated symptoms. @choum collects precise geographic information while protecting the user's privacy by using geomasking methods. By providing an evidence base to inform citizens and local authorities on areas potentially facing a high COVID-19 burden, the tool supports the targeted allocation of public health resources and promotes testing. DERR1-10.2196/30444.

Sections du résumé

BACKGROUND BACKGROUND
The early detection of clusters of infectious diseases such as the SARS-CoV-2-related COVID-19 disease can promote timely testing recommendation compliance and help to prevent disease outbreaks. Prior research revealed the potential of COVID-19 participatory syndromic surveillance systems to complement traditional surveillance systems. However, most existing systems did not integrate geographic information at a local scale, which could improve the management of the SARS-CoV-2 pandemic.
OBJECTIVE OBJECTIVE
The aim of this study is to detect active and emerging spatiotemporal clusters of COVID-19-associated symptoms, and to examine (a posteriori) the association between the clusters' characteristics and sociodemographic and environmental determinants.
METHODS METHODS
This report presents the methodology and development of the @choum (English: "achoo") study, evaluating an epidemiological digital surveillance tool to detect and prevent clusters of individuals (target sample size, N=5000), aged 18 years or above, with COVID-19-associated symptoms living and/or working in the canton of Geneva, Switzerland. The tool is a 5-minute survey integrated into a free and secure mobile app (CoronApp-HUG). Participants are enrolled through a comprehensive communication campaign conducted throughout the 12-month data collection phase. Participants register to the tool by providing electronic informed consent and nonsensitive information (gender, age, geographically masked addresses). Symptomatic participants can then report COVID-19-associated symptoms at their onset (eg, symptoms type, test date) by tapping on the @choum button. Those who have not yet been tested are offered the possibility to be informed on their cluster status (information returned by daily automated clustering analysis). At each participation step, participants are redirected to the official COVID-19 recommendations websites. Geospatial clustering analyses are performed using the modified space-time density-based spatial clustering of applications with noise (MST-DBSCAN) algorithm.
RESULTS RESULTS
The study began on September 1, 2020, and will be completed on February 28, 2022. Multiple tests performed at various time points throughout the 5-month preparation phase have helped to improve the tool's user experience and the accuracy of the clustering analyses. A 1-month pilot study performed among 38 pharmacists working in 7 Geneva-based pharmacies confirmed the proper functioning of the tool. Since the tool's launch to the entire population of Geneva on February 11, 2021, data are being collected and clusters are being carefully monitored. The primary study outcomes are expected to be published in mid-2022.
CONCLUSIONS CONCLUSIONS
The @choum study evaluates an innovative participatory epidemiological digital surveillance tool to detect and prevent clusters of COVID-19-associated symptoms. @choum collects precise geographic information while protecting the user's privacy by using geomasking methods. By providing an evidence base to inform citizens and local authorities on areas potentially facing a high COVID-19 burden, the tool supports the targeted allocation of public health resources and promotes testing.
INTERNATIONAL REGISTERED REPORT IDENTIFIER (IRRID) UNASSIGNED
DERR1-10.2196/30444.

Identifiants

pubmed: 34449403
pii: v10i10e30444
doi: 10.2196/30444
pmc: PMC8496683
doi:

Types de publication

Journal Article

Langues

eng

Pagination

e30444

Informations de copyright

©David De Ridder, Andrea Jutta Loizeau, José Luis Sandoval, Frédéric Ehrler, Myriam Perrier, Albert Ritch, Guillemette Violot, Marc Santolini, Bastian Greshake Tzovaras, Silvia Stringhini, Laurent Kaiser, Jean-François Pradeau, Stéphane Joost, Idris Guessous. Originally published in JMIR Research Protocols (https://www.researchprotocols.org), 06.10.2021.

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Auteurs

David De Ridder (D)

Division of Primary Care, Geneva University Hospitals, Geneva, Switzerland.
Department of Health and Community Medicine, Faculty of Medicine, University of Geneva, Geneva, Switzerland.
Group of Geographic Information Research and Analysis in Population Health, Geneva University Hospitals, Geneva, Switzerland.
Laboratory of Geographic Information Systems, School of Architecture, Civil and Environmental Engineering, Swiss Federal Institute of Technology Lausanne, Lausanne, Switzerland.

Andrea Jutta Loizeau (AJ)

Division of Primary Care, Geneva University Hospitals, Geneva, Switzerland.
Department of Health and Community Medicine, Faculty of Medicine, University of Geneva, Geneva, Switzerland.

José Luis Sandoval (JL)

Group of Geographic Information Research and Analysis in Population Health, Geneva University Hospitals, Geneva, Switzerland.
Department of Oncology, Geneva University Hospitals, Geneva, Switzerland.

Frédéric Ehrler (F)

Direction of Information Systems, Geneva University Hospitals, Geneva, Switzerland.

Myriam Perrier (M)

Direction of Information Systems, Geneva University Hospitals, Geneva, Switzerland.

Albert Ritch (A)

Direction of Information Systems, Geneva University Hospitals, Geneva, Switzerland.

Guillemette Violot (G)

Communication Directorate, Geneva University Hospitals, Geneva, Switzerland.

Marc Santolini (M)

Center for Research and Interdisciplinarity, INSERM U1284, University of Paris, Paris, France.

Bastian Greshake Tzovaras (B)

Center for Research and Interdisciplinarity, INSERM U1284, University of Paris, Paris, France.

Silvia Stringhini (S)

Division of Primary Care, Geneva University Hospitals, Geneva, Switzerland.
Department of Health and Community Medicine, Faculty of Medicine, University of Geneva, Geneva, Switzerland.

Laurent Kaiser (L)

Department of Health and Community Medicine, Faculty of Medicine, University of Geneva, Geneva, Switzerland.
Division of Infectious Disease and Laboratory of Virology, Geneva University Hospitals, Geneva, Switzerland.
Center for Emerging Viral Diseases, Geneva University Hospitals, Geneva, Switzerland.

Jean-François Pradeau (JF)

Direction of Information Systems, Geneva University Hospitals, Geneva, Switzerland.

Stéphane Joost (S)

Group of Geographic Information Research and Analysis in Population Health, Geneva University Hospitals, Geneva, Switzerland.
Laboratory of Geographic Information Systems, School of Architecture, Civil and Environmental Engineering, Swiss Federal Institute of Technology Lausanne, Lausanne, Switzerland.

Idris Guessous (I)

Division of Primary Care, Geneva University Hospitals, Geneva, Switzerland.
Department of Health and Community Medicine, Faculty of Medicine, University of Geneva, Geneva, Switzerland.
Group of Geographic Information Research and Analysis in Population Health, Geneva University Hospitals, Geneva, Switzerland.
Laboratory of Geographic Information Systems, School of Architecture, Civil and Environmental Engineering, Swiss Federal Institute of Technology Lausanne, Lausanne, Switzerland.

Classifications MeSH