Enabling rational gut microbiome manipulations by understanding gut ecology through experimentally-evidenced in silico models.

Precision medicine agent-based modeling computational microbiology dietary intervention genome-scale modeling gut microbial ecology host–microbiome interactions microbial culturing systems biology

Journal

Gut microbes
ISSN: 1949-0984
Titre abrégé: Gut Microbes
Pays: United States
ID NLM: 101495343

Informations de publication

Date de publication:
Historique:
entrez: 30 8 2021
pubmed: 31 8 2021
medline: 12 1 2022
Statut: ppublish

Résumé

The gut microbiome has emerged as a contributing factor in non-communicable disease, rendering it a target of health-promoting interventions. Yet current understanding of the host-microbiome dynamic is insufficient to predict the variation in intervention outcomes across individuals. We explore the mechanisms that underpin the gut bacterial ecosystem and highlight how a more complete understanding of this ecology will enable improved intervention outcomes. This ecology varies within the gut over space and time. Interventions disrupt these processes, with cascading consequences throughout the ecosystem.

Identifiants

pubmed: 34455914
doi: 10.1080/19490976.2021.1965698
pmc: PMC8432618
doi:

Substances chimiques

Dietary Fiber 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't Review

Langues

eng

Sous-ensembles de citation

IM

Pagination

1965698

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Auteurs

Juan P Molina Ortiz (JP)

School of Chemical and Biomolecular Engineering, Faculty of Engineering, The University of Sydney, Sydney, Australia.
Faculty of Engineering, Centre for Advanced Food Engineering, The University of Sydney, Sydney, Australia.

Dale D McClure (DD)

School of Chemical and Biomolecular Engineering, Faculty of Engineering, The University of Sydney, Sydney, Australia.
Faculty of Engineering, Centre for Advanced Food Engineering, The University of Sydney, Sydney, Australia.

Erin R Shanahan (ER)

School of Life and Environmental Sciences, Faculty of Science, The University of Sydney, Sydney, Australia.
Charles Perkins Centre, The University of Sydney, Sydney, Australia.

Fariba Dehghani (F)

School of Chemical and Biomolecular Engineering, Faculty of Engineering, The University of Sydney, Sydney, Australia.
Faculty of Engineering, Centre for Advanced Food Engineering, The University of Sydney, Sydney, Australia.

Andrew J Holmes (AJ)

Faculty of Engineering, Centre for Advanced Food Engineering, The University of Sydney, Sydney, Australia.
School of Life and Environmental Sciences, Faculty of Science, The University of Sydney, Sydney, Australia.
Charles Perkins Centre, The University of Sydney, Sydney, Australia.

Mark N Read (MN)

Faculty of Engineering, Centre for Advanced Food Engineering, The University of Sydney, Sydney, Australia.
Charles Perkins Centre, The University of Sydney, Sydney, Australia.
School of Computer Science, Faculty of Engineering, The University of Sydney, Sydney, Australia.

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