COVID-19
In silico
Molecular Docking
RNA-dependent RNA polymerase (RdRp)
SARS-CoV-2
Journal
Molecular biology research communications
ISSN: 2345-2005
Titre abrégé: Mol Biol Res Commun
Pays: Iran
ID NLM: 101613459
Informations de publication
Date de publication:
Sep 2021
Sep 2021
Historique:
entrez:
3
9
2021
pubmed:
4
9
2021
medline:
4
9
2021
Statut:
ppublish
Résumé
The severe acute respiratory syndrome is a viral respiratory disease recognised as COVID-19, caused by severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2). Formerly, no precise remedies are available, and many studies regarding COVID-19 prevention and treatment are under development. Several targets for the design of drugs are identified, and studies are in headway to explore the potential target. RNA-dependent RNA polymerase (RdRp) protein identified as a promising target against SARS-CoV-2 infection for the drug design due to its significant role in viral replication. The present study focuses on identifying the binding effect of previously known RdRp inhibitors with RdRp of SARS-CoV-2 using molecular docking and molecular dynamics simulation approaches. Molecular docking and binding free energy calculations against RdRp enzyme identified suramin as a potential compound that showed the highest docking score of -7.83 Kcal/mole and binding energy of -80.83 Kcal/mole as a comparison to other compounds. Further, molecular dynamics simulation studies were moreover showed the stable binding behaviour of suramin docked complex in the protein active site. Thus, the study concludes that suramin might be helpful as a potential inhibitor against RNA-dependent RNA polymerase of SRAS-CoV-2. However, further investigation is needed to assess the possible effect of inhibitors on RdRp through
Identifiants
pubmed: 34476266
doi: 10.22099/mbrc.2021.40367.1621
pmc: PMC8340315
doi:
Types de publication
Journal Article
Langues
eng
Pagination
131-140Déclaration de conflit d'intérêts
The authors have no conflict of interest regarding publication of this article.
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