COVID-19 In silico Molecular Docking RNA-dependent RNA polymerase (RdRp) SARS-CoV-2

Journal

Molecular biology research communications
ISSN: 2345-2005
Titre abrégé: Mol Biol Res Commun
Pays: Iran
ID NLM: 101613459

Informations de publication

Date de publication:
Sep 2021
Historique:
entrez: 3 9 2021
pubmed: 4 9 2021
medline: 4 9 2021
Statut: ppublish

Résumé

The severe acute respiratory syndrome is a viral respiratory disease recognised as COVID-19, caused by severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2). Formerly, no precise remedies are available, and many studies regarding COVID-19 prevention and treatment are under development. Several targets for the design of drugs are identified, and studies are in headway to explore the potential target. RNA-dependent RNA polymerase (RdRp) protein identified as a promising target against SARS-CoV-2 infection for the drug design due to its significant role in viral replication. The present study focuses on identifying the binding effect of previously known RdRp inhibitors with RdRp of SARS-CoV-2 using molecular docking and molecular dynamics simulation approaches. Molecular docking and binding free energy calculations against RdRp enzyme identified suramin as a potential compound that showed the highest docking score of -7.83 Kcal/mole and binding energy of -80.83 Kcal/mole as a comparison to other compounds. Further, molecular dynamics simulation studies were moreover showed the stable binding behaviour of suramin docked complex in the protein active site. Thus, the study concludes that suramin might be helpful as a potential inhibitor against RNA-dependent RNA polymerase of SRAS-CoV-2. However, further investigation is needed to assess the possible effect of inhibitors on RdRp through

Identifiants

pubmed: 34476266
doi: 10.22099/mbrc.2021.40367.1621
pmc: PMC8340315
doi:

Types de publication

Journal Article

Langues

eng

Pagination

131-140

Déclaration de conflit d'intérêts

The authors have no conflict of interest regarding publication of this article.

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Auteurs

Pushpendra Singh (P)

State Virus Research and Diagnostic Laboratory, Department of Microbiology, All India Institute of Medical Sciences, Raipur, Chhattisgarh-492099 India.
Equally contributed, Pushpendra Singh and Manish Kumar Tripathi both are joint first author.

Manish Kumar Tripathi (MK)

Department of Biophysics, All India Institute of Medical Sciences, New Delhi-110029, India.
Equally contributed, Pushpendra Singh and Manish Kumar Tripathi both are joint first author.

Mohammad Yasir (M)

Department of Nephrology, All India Institute of Medical Science Bhopal, Madhya Pradesh-462020 India.

Ruchi Khare (R)

Department of Biological Science and Engineering, Maulana Azad National Institute of Technology, Bhopal, Madhya Pradesh-462003 India.

Rahul Shrivastava (R)

Department of Biological Science and Engineering, Maulana Azad National Institute of Technology, Bhopal, Madhya Pradesh-462003 India.

Classifications MeSH