Chalcogen Bonds Involving Selenium in Protein Structures.
Journal
ACS chemical biology
ISSN: 1554-8937
Titre abrégé: ACS Chem Biol
Pays: United States
ID NLM: 101282906
Informations de publication
Date de publication:
17 09 2021
17 09 2021
Historique:
pubmed:
4
9
2021
medline:
24
11
2021
entrez:
3
9
2021
Statut:
ppublish
Résumé
Chalcogen bonds are the specific interactions involving group 16 elements as electrophilic sites. The role of chalcogen atoms as sticky sites in biomolecules is underappreciated, and the few available studies have mostly focused on S. Here, we carried out a statistical analysis over 3562 protein structures in the Protein Data Bank (PDB) containing 18 266 selenomethionines and found that Se···O chalcogen bonds are commonplace. These findings may help the future design of functional peptides and contribute to understanding the role of Se in nature.
Identifiants
pubmed: 34477364
doi: 10.1021/acschembio.1c00441
pmc: PMC8453483
doi:
Substances chimiques
Amino Acids
0
Chalcogens
0
Selenomethionine
964MRK2PEL
Fructokinases
EC 2.7.1.-
fructokinase
EC 2.7.1.4
Selenium
H6241UJ22B
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
1622-1627Références
Biol Chem. 1999 Apr;380(4):495-8
pubmed: 10355636
ACS Chem Biol. 2016 Mar 18;11(3):748-54
pubmed: 26713889
Chemphyschem. 2018 Oct 5;19(19):2540-2548
pubmed: 30003638
Angew Chem Int Ed Engl. 2019 Feb 11;58(7):1880-1891
pubmed: 30225899
Protein Sci. 2015 Dec;24(12):1920-33
pubmed: 26402741
Science. 1990 Sep 21;249(4975):1398-405
pubmed: 2169648
J Mol Biol. 1977 May 25;112(3):535-42
pubmed: 875032
J Mol Model. 2017 Sep 24;23(10):287
pubmed: 28942498
Acc Chem Res. 2019 May 21;52(5):1313-1324
pubmed: 31082186
J Am Chem Soc. 2002 Sep 4;124(35):10613-20
pubmed: 12197764
J Chem Inf Model. 2016 Dec 27;56(12):2298-2309
pubmed: 27936771
Chemistry. 2020 Apr 6;26(20):4599-4606
pubmed: 31943433
Bioinformatics. 2012 Dec 1;28(23):3150-2
pubmed: 23060610
J Med Chem. 2015 Jun 11;58(11):4383-438
pubmed: 25734370
J Biomol Struct Dyn. 2001 Aug;19(1):115-28
pubmed: 11565843
Proteins. 2008 Jan 1;70(1):273-9
pubmed: 17876832
ACS Chem Biol. 2019 Aug 16;14(8):1677-1686
pubmed: 31243961
ACS Chem Biol. 2020 Jul 17;15(7):1942-1948
pubmed: 32469201
Chemistry. 2019 Jan 2;25(1):323-333
pubmed: 30600860
Nucleic Acids Res. 2019 Jan 8;47(D1):D464-D474
pubmed: 30357411
Nucleic Acids Res. 2000 Jan 1;28(1):235-42
pubmed: 10592235
Biochemistry. 2013 Jan 15;52(2):333-42
pubmed: 23256729
Angew Chem Int Ed Engl. 2018 May 4;57(19):5408-5412
pubmed: 29558562
J Chem Inf Model. 2015 Oct 26;55(10):2138-53
pubmed: 26393532
PLoS One. 2012;7(1):e30581
pubmed: 22295093
Sci Rep. 2016 Nov 14;6:37123
pubmed: 27841370
ACS Chem Biol. 2016 Apr 15;11(4):821-41
pubmed: 26949981
Physiol Rev. 2014 Jul;94(3):739-77
pubmed: 24987004
Methods Mol Biol. 2016;1415:139-52
pubmed: 27115631
Chemistry. 2019 Jul 2;25(37):8875-8883
pubmed: 30997926
PLoS One. 2012;7(1):e30528
pubmed: 22291978
Structure. 2003 Nov;11(11):1359-67
pubmed: 14604526