Increased risk of severe clinical course of COVID-19 in carriers of HLA-C*04:01.

COVID-19 Genetics Human Leukocyte Antigen SARS-CoV-2 intubation

Journal

EClinicalMedicine
ISSN: 2589-5370
Titre abrégé: EClinicalMedicine
Pays: England
ID NLM: 101733727

Informations de publication

Date de publication:
Oct 2021
Historique:
received: 17 06 2021
revised: 01 08 2021
accepted: 04 08 2021
pubmed: 8 9 2021
medline: 8 9 2021
entrez: 7 9 2021
Statut: ppublish

Résumé

Since the beginning of the coronavirus disease 2019 (COVID-19) pandemic, there has been increasing urgency to identify pathophysiological characteristics leading to severe clinical course in patients infected with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). Human leukocyte antigen alleles (HLA) have been suggested as potential genetic host factors that affect individual immune response to SARS-CoV-2. We sought to evaluate this hypothesis by conducting a multicenter study using HLA sequencing. We analyzed the association between COVID-19 severity and HLAs in 435 individuals from Germany ( We describe a potential association of HLA-C*04:01 with severe clinical course of COVID-19. Carriers of HLA-C*04:01 had twice the risk of intubation when infected with SARS-CoV-2 (risk ratio 1.5 [95% CI 1.1-2.1], odds ratio 3.5 [95% CI 1.9-6.6], adjusted HLA-C*04:01 carrier state is associated with severe clinical course in SARS-CoV-2. Our findings suggest that HLA class I alleles have a relevant role in immune defense against SARS-CoV-2. Funded by Roche Sequencing Solutions, Inc.

Sections du résumé

BACKGROUND BACKGROUND
Since the beginning of the coronavirus disease 2019 (COVID-19) pandemic, there has been increasing urgency to identify pathophysiological characteristics leading to severe clinical course in patients infected with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). Human leukocyte antigen alleles (HLA) have been suggested as potential genetic host factors that affect individual immune response to SARS-CoV-2. We sought to evaluate this hypothesis by conducting a multicenter study using HLA sequencing.
METHODS METHODS
We analyzed the association between COVID-19 severity and HLAs in 435 individuals from Germany (
FINDINGS RESULTS
We describe a potential association of HLA-C*04:01 with severe clinical course of COVID-19. Carriers of HLA-C*04:01 had twice the risk of intubation when infected with SARS-CoV-2 (risk ratio 1.5 [95% CI 1.1-2.1], odds ratio 3.5 [95% CI 1.9-6.6], adjusted
INTERPRETATION CONCLUSIONS
HLA-C*04:01 carrier state is associated with severe clinical course in SARS-CoV-2. Our findings suggest that HLA class I alleles have a relevant role in immune defense against SARS-CoV-2.
FUNDING BACKGROUND
Funded by Roche Sequencing Solutions, Inc.

Identifiants

pubmed: 34490415
doi: 10.1016/j.eclinm.2021.101099
pii: S2589-5370(21)00379-5
pmc: PMC8410317
doi:

Types de publication

Journal Article

Langues

eng

Pagination

101099

Subventions

Organisme : NIAID NIH HHS
ID : HHSN272201400008C
Pays : United States
Organisme : NHLBI NIH HHS
ID : R01 HL160661
Pays : United States
Organisme : NHLBI NIH HHS
ID : R35 HL140026
Pays : United States
Organisme : NHLBI NIH HHS
ID : K23 HL133495
Pays : United States
Organisme : NIAID NIH HHS
ID : U19 AI077439
Pays : United States
Organisme : NHLBI NIH HHS
ID : K01 HL130704
Pays : United States

Informations de copyright

© 2021 The Authors.

Déclaration de conflit d'intérêts

Bettina Heidecker, MD reports support from Roche Sequencing Solutions, Inc; a project grant from the Swiss National Science Foundation; is an inventor on patents that use RNA for diagnosis of myocarditis. Juerg H. Beer, MD reports grants from the Swiss National Foundation of Science, the Swiss Heart Foundation, the Foundation Kardio, Baden; Grant support to the institution from Bayer not related to this study; and lecture fee from Daiichi Sankyo to the institution. Martin Witzenrath, MD reports grants from Deutsche Forschungsgemeinschaft, Bundesministerium für Bildung und Forschung, Deutsche Gesellschaft für Pneumologie, European Respiratory Society, Marie Curie Foundation, Else Kröner Fresenius Stiftung, Capnetz Stiftung, International Max Planck Research School, Quark Pharma, Takeda Pharma, Noxxon, Pantherna, Silence Therapeutics, Vaxxilon, Actelion, Bayer Health Care, Biotest, and Boehringer Ingelheim; consulting fees from Noxxon, Pantherna, Silence Therapeutics, Vaxxilon, Aptarion, Glaxo Smith Kline, Sinoxa, and Biotest; payment or honoraria for lectures, presentations, speakers bureaus, manuscript writing or educational events from Astra Zeneca, Berlin Chemie, Chiesi, Novartis, Teva, Actelion, Boehringer Ingelheim, Glaxo Smith Kline, Biotest, and Bayer Health Care; patent EPO 12,181,535.1: IL-27 for modulation of immune response in acute lung injury issued 2012, patent WO/2010/094,491: Means for inhibiting the expression of Ang-2 issued 2010, and patent DE 102,020,116,249.9: Camostat/ Niclosamide cotreatment in SARS-CoV-2 infected human lung cells issued 2020/21. Alexander Rakitko, Valery Ilinsky, and Iaroslav Popov are employees of Genotek Ltd. Melina Müller declares support for the present manuscript from Roche Sequencing Solutions and Swiss National Science Foundation and Berlin Institutes of Health. Joseph Balnis and Ariel Jaitovich declare support from the National Institute of Health (NIH, K01-HL130704). Bernd Hinzmann, Mauricio A Salvo, Anja Blüher, and Sandra Siemann declare support from Roche Sequencing Solutions. Carolyn Calfee reports NIH payment to her institution; payment from Roche/Genentech Payment and Bayer to her institution for observational study in ARDS; payment from Quantum Leap Healthcare Collaborative to her institution for adaptive platform Phase 2 trial in COVID-19; and consulting fees for novel therapies for ARDS from Vasomune and Quark Pharmaceuticals Payment. David J Erle reports NIH Grants to UCSF. Prescott G Woodruff reports support from Roche Sequencing Solutions, Inc., Swiss National Science Foundation, and Berlin Institutes of Health; US National Institutes of Health grant to his institution (U19AI077439) Charles Langelier reports NIH payment to his institution. Federico García reports grants from ViiV, MSD, and Roche; payment from Abbvie, Gilead, ViiV, MSD, and Roche; support for attending meetings and/or travel from Abbvie and Gilead; participation on a Data Safety Monitoring Board or Advisory Board for Gilead, ViiV, and Thera. Joanna Zyla has been supported by the Silesian University of Technology grant for Support and Development of Research Potential. Terry C. Jones reports a grant from Wellcome Trust, UK, on unrelated research on ancient viral DNA and an NIAID-NIH CEIRS grant (HHSN272201400008C). Leif Erik Sander reports Berlin Institutes of Health support to the PA-COVID-19 study group. Wolfgang Poller reports that this study was partially funded by Roche Sequencing Solutions, Inc., which also provided material for exome sequencing. Ulf Landmesser reports consulting fees from Abbott, Amgen, Bayer, Cardiac Dimensions, Novartis, Pfizer, and Omeicos; payment or honoraria for lectures, presentations, speakers bureaus, manuscript writing or educational events from Novartis, Abott, NovoNordisk, Bayer, Amgen, DaiichiSankyo, Pfizer, Sanofi, Boson Scientific, Astra Zeneca, and Boehringer Ingelheim. All other authors have nothing to declare.

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Auteurs

January Weiner (J)

Berlin Institute of Health at Charité - Universitätsmedizin Berlin, Core Unit Bioinformatics Berlin, DE 10178, Germany.

Phillip Suwalski (P)

Department of Cardiology, Charite Universitaetsmedizin Berlin, DE 12203, Germany.
Berliner Simulations- und Trainingszentrum, Charite, Berlin, DE 10117, Germany.

Manuel Holtgrewe (M)

Berlin Institute of Health at Charité - Universitätsmedizin Berlin, Core Unit Genomics Berlin, DE 10178, Germany.

Alexander Rakitko (A)

Genotek Ltd., Nastavnicheskii pereulok 17/1, R 105120 Moscow, Russian Federation.

Charlotte Thibeault (C)

Charite Universitaetsmedizin Berlin, Department of Infectious Diseases and Respiratory Medicine Berlin, DE 10117, Germany.

Melina Müller (M)

Department of Cardiology, Charite Universitaetsmedizin Berlin, DE 12203, Germany.

Dimitri Patriki (D)

Kantonsspital Baden AG, Department of Medicine, Baden, CH 5404, Switzerland.

Claudia Quedenau (C)

Max Delbrueck Center for Molecular Medicine Berlin, DE 13125, Germany.

Ulrike Krüger (U)

Berlin Institute of Health at Charité - Universitätsmedizin Berlin, Core Unit Genomics Berlin, DE 10178, Germany.

Valery Ilinsky (V)

Genotek Ltd., Nastavnicheskii pereulok 17/1, R 105120 Moscow, Russian Federation.

Iaroslav Popov (I)

Genotek Ltd., Nastavnicheskii pereulok 17/1, R 105120 Moscow, Russian Federation.

Joseph Balnis (J)

Department of Molecular and Cellular Physiology, Albany Medical College, NY, USA.

Ariel Jaitovich (A)

Department of Molecular and Cellular Physiology, Albany Medical College, NY, USA.

Elisa T Helbig (ET)

Charite Universitaetsmedizin Berlin, Department of Infectious Diseases and Respiratory Medicine Berlin, DE 10117, Germany.

Lena J Lippert (LJ)

Charite Universitaetsmedizin Berlin, Department of Infectious Diseases and Respiratory Medicine Berlin, DE 10117, Germany.

Paula Stubbemann (P)

Charite Universitaetsmedizin Berlin, Department of Infectious Diseases and Respiratory Medicine Berlin, DE 10117, Germany.

Luis M Real (LM)

Unidad Clínica de Enfermedades Infecciosas y Microbiología. Hospital Universitario de Valme, Sevilla, ES 41014, Spain.

Juan Macías (J)

Unidad Clínica de Enfermedades Infecciosas y Microbiología. Hospital Universitario de Valme, Sevilla, ES 41014, Spain.

Juan A Pineda (JA)

Unidad Clínica de Enfermedades Infecciosas y Microbiología. Hospital Universitario de Valme, Sevilla, ES 41014, Spain.

Marta Fernandez-Fuertes (M)

Unidad Clínica de Enfermedades Infecciosas y Microbiología. Hospital Universitario de Valme, Sevilla, ES 41014, Spain.

Xiaomin Wang (X)

Department of Cardiology, Charite Universitaetsmedizin Berlin, DE 12203, Germany.

Zehra Karadeniz (Z)

Department of Cardiology, Charite Universitaetsmedizin Berlin, DE 12203, Germany.

Jacopo Saccomanno (J)

Charite Universitaetsmedizin Berlin, Department of Infectious Diseases and Respiratory Medicine Berlin, DE 10117, Germany.

Jan-Moritz Doehn (JM)

Charite Universitaetsmedizin Berlin, Department of Infectious Diseases and Respiratory Medicine Berlin, DE 10117, Germany.

Ralf-Harto Hübner (RH)

Charite Universitaetsmedizin Berlin, Department of Infectious Diseases and Respiratory Medicine Berlin, DE 10117, Germany.

Bernd Hinzmann (B)

Roche Sequencing Solutions Pleasanton, USA 94588.

Mauricio Salvo (M)

Roche Sequencing Solutions Pleasanton, USA 94588.

Anja Blueher (A)

Roche Sequencing Solutions Pleasanton, USA 94588.

Sandra Siemann (S)

Roche Sequencing Solutions Pleasanton, USA 94588.

Stjepan Jurisic (S)

Kantonsspital Baden AG, Department of Medicine, Baden, CH 5404, Switzerland.

Juerg H Beer (JH)

Kantonsspital Baden AG, Department of Medicine, Baden, CH 5404, Switzerland.

Jonas Rutishauser (J)

Kantonsspital Baden AG, Department of Medicine, Baden, CH 5404, Switzerland.

Benedikt Wiggli (B)

Kantonsspital Baden AG, Department of Medicine, Baden, CH 5404, Switzerland.

Hansruedi Schmid (H)

Kantonsspital Baden AG, Department of Medicine, Baden, CH 5404, Switzerland.

Kathrin Danninger (K)

Department of Cardiology and Intensive Care, Klinikum Wels-Grieskirchen, Wels, Austria.

Ronald Binder (R)

Department of Cardiology and Intensive Care, Klinikum Wels-Grieskirchen, Wels, Austria.

Victor M Corman (VM)

Charite Universitaetsmedizin Berlin, Institute of Virology Chariteplatz, 1 d-10117, Berlin, DE, 10117, Germany.

Barbara Mühlemann (B)

Charite Universitaetsmedizin Berlin, Institute of Virology Chariteplatz, 1 d-10117, Berlin, DE, 10117, Germany.

Rao Arjun Arkal (R)

ImmunoX Initiative, University of California San Francisco, San Francisco, CA, USA.
CoLabs, University of California San Francisco, San Francisco, CA, USA.
Department of Pathology, University of California, San Francisco, CA, USA.

Gabriela K Fragiadakis (GK)

ImmunoX Initiative, University of California San Francisco, San Francisco, CA, USA.
CoLabs, University of California San Francisco, San Francisco, CA, USA.
Division of Rheumatology, Department of Medicine, University of California San Francisco, San Francisco, CA, USA.

Eran Mick (E)

Division of Pulmonary, Critical Care, Allergy, and Sleep Medicine, University of California, San Francisco, CA, USA.
Division of Infectious Diseases, University of California, San Francisco, CA, USA.
Chan Zuckerberg Biohub, San Francisco, CA, USA.

Consortium Comet (C)

COMET (COVID-19 Multiphenotyping for Effective Therapies) Consortium members are listed in the Supplementary Appendix 1.

Carolyn S Calfee (CS)

Division of Pulmonary, Critical Care, Allergy, and Sleep Medicine, University of California, San Francisco, CA, USA.

David J Erle (DJ)

ImmunoX Initiative, University of California San Francisco, San Francisco, CA, USA.
CoLabs, University of California San Francisco, San Francisco, CA, USA.
Institute for Human Genetics, University of California San Francisco, San Francisco, CA, USA.
Division of Pulmonary, Critical Care, Allergy, and Sleep Medicine, University of California, San Francisco, CA, USA.
COMET (COVID-19 Multiphenotyping for Effective Therapies) Consortium members are listed in the Supplementary Appendix 1.
Lung Biology Center, University of California, San Francisco, CA, USA.
Department of Medicine, University of California, San Francisco, CA, USA.

Carolyn M Hendrickson (CM)

Division of Pulmonary, Critical Care, Allergy, and Sleep Medicine, University of California, San Francisco, CA, USA.

Kirsten N Kangelaris (KN)

Department of Medicine, University of California, San Francisco, CA, USA.

Matthew F Krummel (MF)

ImmunoX Initiative, University of California San Francisco, San Francisco, CA, USA.
Department of Pathology, University of California, San Francisco, CA, USA.

Prescott G Woodruff (PG)

ImmunoX Initiative, University of California San Francisco, San Francisco, CA, USA.
Division of Pulmonary, Critical Care, Allergy, and Sleep Medicine, University of California, San Francisco, CA, USA.
Department of Pathology, University of California, San Francisco, CA, USA.
Sandler Asthma Basic Research Center, University of California, San Francisco, CA, USA.

Charles R Langelier (CR)

Division of Infectious Diseases, University of California, San Francisco, CA, USA.
Chan Zuckerberg Biohub, San Francisco, CA, USA.

Urmila Venkataramani (U)

ImmunoX Initiative, University of California San Francisco, San Francisco, CA, USA.
CoLabs, University of California San Francisco, San Francisco, CA, USA.

Federico García (F)

Hospital Universitario Clínico San Cecilio, Instituto de Investigación Ibs. Granada, Spain.

Joanna Zyla (J)

Department of Data Science and Engineering, Silesian University of Technology, Gliwice, Poland.

Christian Drosten (C)

Charite Universitaetsmedizin Berlin, Institute of Virology Chariteplatz, 1 d-10117, Berlin, DE, 10117, Germany.

Braun Alice (B)

Charite Universitaetsmedizin Berlin, Dept. of Psychiatry and Psychotherapy Chariteplatz 1 d-10117 Berlin, DE 10117, Germany.

Terry C Jones (TC)

Charite Universitaetsmedizin Berlin, Institute of Virology Chariteplatz, 1 d-10117, Berlin, DE, 10117, Germany.
German Center for Infection Research (DZIF), Associated Partner Site, 10117 Berlin, Germany.
Centre for Pathogen Evolution, Department of Zoology, University of Cambridge, Downing St., Cambridge, CB2 3EJ, U.K.

Norbert Suttorp (N)

Charite Universitaetsmedizin Berlin, Department of Infectious Diseases and Respiratory Medicine Berlin, DE 10117, Germany.

Martin Witzenrath (M)

Charite Universitaetsmedizin Berlin, Department of Infectious Diseases and Respiratory Medicine Berlin, DE 10117, Germany.

Stefan Hippenstiel (S)

Charite Universitaetsmedizin Berlin, Department of Infectious Diseases and Respiratory Medicine Berlin, DE 10117, Germany.

Tomasz Zemojtel (T)

Berlin Institute of Health at Charité - Universitätsmedizin Berlin, Core Unit Genomics Berlin, DE 10178, Germany.

Carsten Skurk (C)

Department of Cardiology, Charite Universitaetsmedizin Berlin, DE 12203, Germany.

Wolfgang Poller (W)

Department of Cardiology, Charite Universitaetsmedizin Berlin, DE 12203, Germany.

Tatiana Borodina (T)

Max Delbrueck Center for Molecular Medicine Berlin, DE 13125, Germany.

Study Group Pa-Covid (SG)

Pa-COVID Study Group, Members are listed in the Supplementary Appendix 2.

Stephan Ripke (S)

Charite Universitaetsmedizin Berlin, Dept. of Psychiatry and Psychotherapy Chariteplatz 1 d-10117 Berlin, DE 10117, Germany.
Massachusetts General Hospital, Analytic and Translational Genetics, Boston, MA 02114, USA.
Stanley Center for Psychiatry Research, Broad Institute of MIT and Harvard Cambridge MA 02142, USA.

Leif E Sander (LE)

Charite Universitaetsmedizin Berlin, Department of Infectious Diseases and Respiratory Medicine Berlin, DE 10117, Germany.

Dieter Beule (D)

Berlin Institute of Health at Charité - Universitätsmedizin Berlin, Core Unit Bioinformatics Berlin, DE 10178, Germany.

Ulf Landmesser (U)

Department of Cardiology, Charite Universitaetsmedizin Berlin, DE 12203, Germany.
Berlin Institute of Health at Charité, Berlin, Germany.

Toumy Guettouche (T)

Roche Sequencing Solutions Pleasanton, USA 94588.

Florian Kurth (F)

Charite Universitaetsmedizin Berlin, Department of Infectious Diseases and Respiratory Medicine Berlin, DE 10117, Germany.

Bettina Heidecker (B)

Department of Cardiology, Charite Universitaetsmedizin Berlin, DE 12203, Germany.

Classifications MeSH