Mutual Information in Molecular and Macromolecular Systems.

Johari–Goldstein relaxation dynamical heterogeneity glass transition molecular dynamics mutual information roto-translation coupling

Journal

International journal of molecular sciences
ISSN: 1422-0067
Titre abrégé: Int J Mol Sci
Pays: Switzerland
ID NLM: 101092791

Informations de publication

Date de publication:
03 Sep 2021
Historique:
received: 22 07 2021
revised: 24 08 2021
accepted: 28 08 2021
entrez: 10 9 2021
pubmed: 11 9 2021
medline: 21 10 2021
Statut: epublish

Résumé

The relaxation properties of viscous liquids close to their glass transition (GT) have been widely characterised by the statistical tool of time correlation functions. However, the strong influence of ubiquitous non-linearities calls for new, alternative tools of analysis. In this respect, information theory-based observables and, more specifically, mutual information (MI) are gaining increasing interest. Here, we report on novel, deeper insight provided by MI-based analysis of molecular dynamics simulations of molecular and macromolecular glass-formers on two distinct aspects of transport and relaxation close to GT, namely dynamical heterogeneity (DH) and secondary Johari-Goldstein (JG) relaxation processes. In a model molecular liquid with significant DH, MI reveals two populations of particles organised in clusters having either filamentous or compact globular structures that exhibit different mobility and relaxation properties. In a model polymer melt, MI provides clearer evidence of JG secondary relaxation and sharper insight into its DH. It is found that both DH and MI between the orientation and the displacement of the bonds reach (local) maxima at the time scales of the primary and JG secondary relaxation. This suggests that, in (macro)molecular systems, the mechanistic explanation of both DH and relaxation must involve rotation/translation coupling.

Identifiants

pubmed: 34502480
pii: ijms22179577
doi: 10.3390/ijms22179577
pmc: PMC8430596
pii:
doi:

Substances chimiques

Macromolecular Substances 0

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : Università di Pisa
ID : PRA-2018-34

Références

Phys Rev E Stat Nonlin Soft Matter Phys. 2004 Jun;69(6 Pt 2):066138
pubmed: 15244698
Sci Rep. 2019 Oct 4;9(1):14319
pubmed: 31586113
Phys Rev Lett. 1991 Jun 10;66(23):3020-3023
pubmed: 10043678
J Chem Phys. 2013 Mar 28;138(12):12A541
pubmed: 23556792
J Chem Phys. 2004 Jan 8;120(2):857-73
pubmed: 15267922
Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Aug;86(2 Pt 1):020501
pubmed: 23005709
J Phys Chem B. 2018 Apr 5;122(13):3550-3555
pubmed: 29461826
Nature. 2001 Mar 8;410(6825):259-67
pubmed: 11258381
Phys Rev Lett. 2004 Sep 3;93(10):105502
pubmed: 15447415
Polymers (Basel). 2020 Mar 31;12(4):
pubmed: 32244537
Annu Rev Phys Chem. 2000;51:99-128
pubmed: 11031277
Phys Rev Lett. 2013 Oct 18;111(16):165701
pubmed: 24182280
Soft Matter. 2019 Aug 28;15(34):6784-6790
pubmed: 31406967
J Phys Chem Lett. 2012 Mar 15;3(6):735-43
pubmed: 26286282
Science. 2016 Jun 10;352(6291):1308-11
pubmed: 27284191
Eur Phys J E Soft Matter. 2019 Nov 22;42(11):146
pubmed: 31754931
Phys Rev Lett. 2007 Sep 28;99(13):135701
pubmed: 17930609
Sci Adv. 2017 Nov 17;3(11):e1701577
pubmed: 29159283
Phys Rev E Stat Nonlin Soft Matter Phys. 2005 May;71(5 Pt 1):050801
pubmed: 16089513
Phys Rev Lett. 2017 Nov 10;119(19):195501
pubmed: 29219532
Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Oct;86(4 Pt 1):041505
pubmed: 23214589
Phys Rev Lett. 2014 Sep 12;113(11):117801
pubmed: 25260005
Int J Mol Sci. 2019 Nov 14;20(22):
pubmed: 31739510
Phys Rev Lett. 2020 Jun 5;124(22):225501
pubmed: 32567891
Nat Commun. 2015 Jan 22;6:6089
pubmed: 25608791
J Chem Phys. 2004 Jan 1;120(1):437-53
pubmed: 15267306
Rep Prog Phys. 2016 Jan;79(1):016601
pubmed: 26684508

Auteurs

Antonio Tripodo (A)

Dipartimento di Fisica "Enrico Fermi", Università di Pisa, Largo B.Pontecorvo 3, I-56127 Pisa, Italy.

Francesco Puosi (F)

Istituto Nazionale di Fisica Nucleare (INFN), Sezione di Pisa, Largo B.Pontecorvo 3, I-56127 Pisa, Italy.

Marco Malvaldi (M)

Dipartimento di Fisica "Enrico Fermi", Università di Pisa, Largo B.Pontecorvo 3, I-56127 Pisa, Italy.

Dino Leporini (D)

Dipartimento di Fisica "Enrico Fermi", Università di Pisa, Largo B.Pontecorvo 3, I-56127 Pisa, Italy.
Istituto per i Processi Chimico-Fisici-Consiglio Nazionale delle Ricerche (IPCF-CNR), Via G. Moruzzi 1, I-56124 Pisa, Italy.

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Classifications MeSH