Small Non-coding RNA Expression Following Respiratory Syncytial Virus or Measles Virus Infection of Neuronal Cells.
measles virus
microRNAs
neuronal cells
piwi-associated RNAs
respiratory syncytial virus
transfer RNAs
Journal
Frontiers in microbiology
ISSN: 1664-302X
Titre abrégé: Front Microbiol
Pays: Switzerland
ID NLM: 101548977
Informations de publication
Date de publication:
2021
2021
Historique:
received:
24
02
2021
accepted:
03
08
2021
entrez:
20
9
2021
pubmed:
21
9
2021
medline:
21
9
2021
Statut:
epublish
Résumé
Respiratory syncytial virus (RSV) or measles virus (MeV) infection modifies host responses through small non-coding RNA (sncRNA) expression. We show that RSV or MeV infection of neuronal cells induces sncRNAs including various microRNAs and transfer RNA fragments (tRFs). We show that these tRFs originate from select tRNAs (GCC and CAC for glycine, CTT and AAC for Valine, and CCC and TTT for Lysine). Some of the tRNAs are rarely used by RSV or MeV as indicated by relative synonymous codon usage indices suggesting selective cleavage of the tRNAs occurs in infected neuronal cells. The data implies that differentially expressed sncRNAs may regulate host gene expression
Identifiants
pubmed: 34539595
doi: 10.3389/fmicb.2021.671852
pmc: PMC8446675
doi:
Types de publication
Journal Article
Langues
eng
Pagination
671852Informations de copyright
Copyright © 2021 Bakre, Duffy, Abdullah, Cosby and Tripp.
Déclaration de conflit d'intérêts
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Références
Genome Biol. 2014;15(12):550
pubmed: 25516281
Wiley Interdiscip Rev RNA. 2011 May-Jun;2(3):362-75
pubmed: 21572561
J Gen Virol. 2017 Jul;98(7):1600-1610
pubmed: 28708049
J Virol. 2003 Sep;77(18):9831-44
pubmed: 12941892
PLoS One. 2017 Feb 10;12(2):e0171681
pubmed: 28187208
Mol Biol Evol. 2018 Jun 1;35(6):1547-1549
pubmed: 29722887
J Gen Virol. 2015 Nov;96(11):3179-3191
pubmed: 26253191
Mol Cell. 2015 Jul 2;59(1):50-61
pubmed: 26028536
Nucleic Acids Res. 2015 Jul 1;43(W1):W460-6
pubmed: 25977294
J Clin Virol. 2007 Aug;39(4):312-7
pubmed: 17625962
Viruses. 2021 Feb 23;13(2):
pubmed: 33672319
Nature. 2000 Aug 24;406(6798):893-7
pubmed: 10972291
Viruses. 2018 Aug 19;10(8):
pubmed: 30126238
Med Mal Infect. 2018 Sep;48(6):377-382
pubmed: 29548714
J Infect Dis. 2004 Dec 1;190(11):1936-40
pubmed: 15529257
Nucleic Acids Res. 2018 Jan 4;46(D1):D239-D245
pubmed: 29156006
Genome Res. 2009 Jan;19(1):92-105
pubmed: 18955434
Mol Ther. 2015 Oct;23(10):1622-9
pubmed: 26156244
Virus Res. 2005 Aug;111(2):132-47
pubmed: 15893837
Viruses. 2016 Sep 20;8(9):
pubmed: 27657109
J Virol. 2013 Jan;87(2):756-66
pubmed: 23115276
Vaccines (Basel). 2017 Jul 03;5(3):
pubmed: 28671606
Am J Respir Cell Mol Biol. 2001 Feb;24(2):101-7
pubmed: 11159042
J Virol. 2003 Jun;77(11):6580-4
pubmed: 12743318
Viral Immunol. 2018 Mar;31(2):133-141
pubmed: 29323621
Sci Rep. 2017 Apr 13;7:46080
pubmed: 28452371
Clin Infect Dis. 2017 Jul 15;65(2):233-234
pubmed: 28387848
BMC Infect Dis. 2015 Mar 25;15:150
pubmed: 25884957
J Virol. 2000 Nov;74(22):10508-13
pubmed: 11044095
Biochimie. 2015 Jul;114:10-7
pubmed: 25633441
J Child Neurol. 2015 Jan;30(1):69-74
pubmed: 24789113
Front Cell Neurosci. 2018 Oct 26;12:386
pubmed: 30416428
Crit Rev Microbiol. 2016 Sep;42(5):800-12
pubmed: 26119025
Mol Cancer. 2020 Feb 25;19(1):36
pubmed: 32098627
Front Immunol. 2012 Jul 31;3:221
pubmed: 23060873
Am J Perinatol. 2018 May;35(6):541-544
pubmed: 29694992
PLoS One. 2017 Oct 26;12(10):e0187077
pubmed: 29073265
J Mol Med (Berl). 2018 Nov;96(11):1167-1176
pubmed: 30232504
J Biol Chem. 2010 Apr 2;285(14):10959-68
pubmed: 20129916
Nature. 2017 Dec 7;552(7683):57-62
pubmed: 29186115
Pediatr Res. 2018 Mar;83(3):606-614
pubmed: 29244796
J Neuroimmunol. 2018 Mar 15;316:80-97
pubmed: 29366594
Cell. 2017 Jun 29;170(1):61-71.e11
pubmed: 28666125
Mol Ther. 2013 Feb;21(2):368-79
pubmed: 23183536
Am J Respir Crit Care Med. 2004 Apr 1;169(7):801-5
pubmed: 14742302
BMC Bioinformatics. 2018 Feb 14;19(1):54
pubmed: 29444641
Bioinformatics. 2015 Oct 15;31(20):3365-7
pubmed: 26093149
J Virol. 2018 Feb 26;92(6):
pubmed: 29298883
Trends Biochem Sci. 2020 Sep;45(9):794-805
pubmed: 32505636
RNA. 2018 Aug;24(8):1093-1105
pubmed: 29844106
Int J Mol Sci. 2019 Dec 11;20(24):
pubmed: 31835747
J Virol. 2007 Nov;81(21):11569-76
pubmed: 17686838
J Virol. 2006 Jan;80(1):537-40
pubmed: 16352577
Viruses. 2019 Nov 02;11(11):
pubmed: 31684034
Oncotarget. 2017 Jul 18;8(57):96627-96635
pubmed: 29228557
Mol Ther Nucleic Acids. 2020 Aug 14;22:72-83
pubmed: 32916600
J Neuroimmunol. 2002 Aug;129(1-2):141-53
pubmed: 12161030
Mol Cell. 2011 Aug 19;43(4):613-23
pubmed: 21855800
Methods. 2019 Feb 15;155:10-19
pubmed: 30395968
Gene. 2018 Dec 15;678:73-78
pubmed: 30077763
PLoS One. 2018 Jan 30;13(1):e0191812
pubmed: 29381765
Peptides. 2008 Jan;29(1):47-56
pubmed: 18055066
Nucleic Acids Res. 2017 Jan 4;45(D1):D353-D361
pubmed: 27899662
Acta Neuropathol. 1998 Dec;96(6):637-42
pubmed: 9845294
Int J Neurosci. 2017 Jan;127(1):44-50
pubmed: 26732732
Nat Immunol. 2013 Mar;14(3):205-10
pubmed: 23416678
Proc Natl Acad Sci U S A. 2013 Jan 22;110(4):1404-9
pubmed: 23297232
Cell Rep. 2019 Dec 17;29(12):3816-3824.e4
pubmed: 31851915
J Pharm Pharmacol. 2015 Mar;67(3):300-18
pubmed: 25533920
Hong Kong Med J. 2018 Oct;24(5):512-520
pubmed: 30245481
RNA. 2020 Jun;26(6):694-707
pubmed: 32144192
Nucleic Acids Res. 2016 Jan 4;44(D1):D457-62
pubmed: 26476454
Viral Immunol. 2012 Jun;25(3):193-203
pubmed: 22551066
F1000Res. 2018 Feb 28;7:237
pubmed: 29560260
Nucleic Acids Res. 2017 Jan 4;45(D1):D128-D134
pubmed: 27794554
Methods Mol Biol. 2007;379:15-34
pubmed: 17502668
Inflammation. 2017 Oct;40(5):1643-1653
pubmed: 28695368
Cell. 2009 Jan 23;136(2):215-33
pubmed: 19167326
Biochim Biophys Acta. 2008 Nov;1779(11):706-11
pubmed: 18549828
J Mol Med (Berl). 2021 Jan;99(1):47-56
pubmed: 33200232
Front Cell Infect Microbiol. 2019 May 08;9:152
pubmed: 31139579
Arch Virol. 2019 Feb;164(2):439-446
pubmed: 30390151
Lancet Infect Dis. 2018 Oct;18(10):e295-e311
pubmed: 29914800
Virol J. 2013 Sep 12;10:283
pubmed: 24025157
Nucleic Acids Res. 2013 Feb 1;41(3):1914-21
pubmed: 23254333
Nat Immunol. 2001 Aug;2(8):732-8
pubmed: 11477410
J Virol. 2000 Feb;74(4):1614-22
pubmed: 10644330
Viral Immunol. 2009 Jun;22(3):147-61
pubmed: 19435411
J Neurovirol. 2011 Dec;17(6):512-7
pubmed: 22052379
Curr Biol. 2005 Aug 23;15(16):R635-8
pubmed: 16111937
J Gen Virol. 2012 Nov;93(Pt 11):2346-2356
pubmed: 22894925
Crit Care. 2006;10(4):R107
pubmed: 16859512
Microrna. 2014;2(3):212-8
pubmed: 25069445
Med Microbiol Immunol. 2016 Oct;205(5):459-70
pubmed: 27329138
Viral Immunol. 2018 Mar;31(2):86-95
pubmed: 29256824
RNA Biol. 2013 Apr;10(4):553-63
pubmed: 23563448
Nature. 2015 Mar 26;519(7544):482-5
pubmed: 25799998
Eur Respir J. 1997 Jan;10(1):20-6
pubmed: 9032486
Bioessays. 2019 May;41(5):e1900009
pubmed: 31026340
Sci Rep. 2018 Jan 17;8(1):995
pubmed: 29343795
Cell Host Microbe. 2012 Nov 15;12(5):623-32
pubmed: 23159052
Virology. 2002 Mar 15;294(2):296-304
pubmed: 12009871
Proteomics. 2012 Feb;12(4-5):666-72
pubmed: 22246955
J Virol. 2016 Jul 11;90(15):6808-6817
pubmed: 27194761
J Virol. 2020 Jan 6;94(2):
pubmed: 31666376
Infect Genet Evol. 2018 Mar;58:1-16
pubmed: 29198972
Minerva Pediatr. 2018 Dec;70(6):589-599
pubmed: 30334623