Multiple sclerosis lesions segmentation from multiple experts: The MICCAI 2016 challenge dataset.


Journal

NeuroImage
ISSN: 1095-9572
Titre abrégé: Neuroimage
Pays: United States
ID NLM: 9215515

Informations de publication

Date de publication:
01 12 2021
Historique:
received: 27 04 2021
revised: 03 09 2021
accepted: 16 09 2021
pubmed: 27 9 2021
medline: 22 1 2022
entrez: 26 9 2021
Statut: ppublish

Résumé

MRI plays a crucial role in multiple sclerosis diagnostic and patient follow-up. In particular, the delineation of T2-FLAIR hyperintense lesions is crucial although mostly performed manually - a tedious task. Many methods have thus been proposed to automate this task. However, sufficiently large datasets with a thorough expert manual segmentation are still lacking to evaluate these methods. We present a unique dataset for MS lesions segmentation evaluation. It consists of 53 patients acquired on 4 different scanners with a harmonized protocol. Hyperintense lesions on FLAIR were manually delineated on each patient by 7 experts with control on T2 sequence, and gathered in a consensus segmentation for evaluation. We provide raw and preprocessed data and a split of the dataset into training and testing data, the latter including data from a scanner not present in the training dataset. We strongly believe that this dataset will become a reference in MS lesions segmentation evaluation, allowing to evaluate many aspects: evaluation of performance on unseen scanner, comparison to individual experts performance, comparison to other challengers who already used this dataset, etc.

Identifiants

pubmed: 34563682
pii: S1053-8119(21)00862-4
doi: 10.1016/j.neuroimage.2021.118589
pii:
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

118589

Informations de copyright

Copyright © 2021. Published by Elsevier Inc.

Auteurs

Olivier Commowick (O)

Univ Rennes, Inria, CNRS, Inserm - IRISA UMR 6074, Empenn ERL U1228, Rennes F-35000, France. Electronic address: https://olivier.commowick.org.

Michaël Kain (M)

Univ Rennes, Inria, CNRS, Inserm - IRISA UMR 6074, Empenn ERL U1228, Rennes F-35000, France.

Romain Casey (R)

Department of Radiology, Lyon Sud Hospital, Hospices Civils de Lyon, Lyon, France.

Roxana Ameli (R)

Department of Radiology, Lyon Sud Hospital, Hospices Civils de Lyon, Lyon, France.

Jean-Christophe Ferré (JC)

Univ Rennes, Inria, CNRS, Inserm - IRISA UMR 6074, Empenn ERL U1228, Rennes F-35000, France; Department of Neuroradiology, CHU Rennes, Rennes F-35033, France.

Anne Kerbrat (A)

Department of Neurology, CHU Rennes, Rennes F-35033, France.

Thomas Tourdias (T)

CHU de Bordeaux, Service de Neuro-Imagerie, Bordeaux, France.

Frédéric Cervenansky (F)

Univ Lyon, INSA-Lyon, Université Claude Bernard Lyon 1, UJM-Saint Etienne, CNRS, Inserm, CREATIS UMR 5220, Lyon U1206, F-69621, France.

Sorina Camarasu-Pop (S)

Univ Lyon, INSA-Lyon, Université Claude Bernard Lyon 1, UJM-Saint Etienne, CNRS, Inserm, CREATIS UMR 5220, Lyon U1206, F-69621, France.

Tristan Glatard (T)

Department of Computer Science and Software Engineering, Concordia University, Montreal, Canada.

Sandra Vukusic (S)

Department of Radiology, Lyon Sud Hospital, Hospices Civils de Lyon, Lyon, France.

Gilles Edan (G)

Univ Rennes, Inria, CNRS, Inserm - IRISA UMR 6074, Empenn ERL U1228, Rennes F-35000, France; Department of Neurology, CHU Rennes, Rennes F-35033, France.

Christian Barillot (C)

Univ Rennes, Inria, CNRS, Inserm - IRISA UMR 6074, Empenn ERL U1228, Rennes F-35000, France.

Michel Dojat (M)

Inserm U1216, University Grenoble Alpes, CHU Grenoble, GIN, Grenoble, France.

Francois Cotton (F)

Department of Radiology, Lyon Sud Hospital, Hospices Civils de Lyon, Lyon, France.

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