Fungi in Permafrost-Affected Soils of the Canadian Arctic: Horizon- and Site-Specific Keystone Taxa Revealed by Co-Occurrence Network.

Zi-Pi plot arctic co-occurrence network keystone taxa permafrost

Journal

Microorganisms
ISSN: 2076-2607
Titre abrégé: Microorganisms
Pays: Switzerland
ID NLM: 101625893

Informations de publication

Date de publication:
13 Sep 2021
Historique:
received: 20 08 2021
revised: 03 09 2021
accepted: 09 09 2021
entrez: 28 9 2021
pubmed: 29 9 2021
medline: 29 9 2021
Statut: epublish

Résumé

Permafrost-affected soil stores a significant amount of organic carbon. Identifying the biological constraints of soil organic matter transformation, e.g., the interaction of major soil microbial soil organic matter decomposers, is crucial for predicting carbon vulnerability in permafrost-affected soil. Fungi are important players in the decomposition of soil organic matter and often interact in various mutualistic relationships during this process. We investigated four different soil horizon types (including specific horizons of cryoturbated soil organic matter (cryoOM)) across different types of permafrost-affected soil in the Western Canadian Arctic, determined the composition of fungal communities by sequencing (Illumina MPS) the fungal internal transcribed spacer region, assigned fungal lifestyles, and by determining the co-occurrence of fungal network properties, identified the topological role of keystone fungal taxa. Compositional analysis revealed a significantly higher relative proportion of the litter saprotroph

Identifiants

pubmed: 34576837
pii: microorganisms9091943
doi: 10.3390/microorganisms9091943
pmc: PMC8466989
pii:
doi:

Types de publication

Journal Article

Langues

eng

Subventions

Organisme : Grantová Agentura České Republiky
ID : 20-21259J

Références

Ecology. 2012 Aug;93(8):1867-79
pubmed: 22928415
Appl Environ Microbiol. 2017 Jun 30;83(14):
pubmed: 28476769
Ecol Evol. 2018 Jul 22;8(16):8217-8230
pubmed: 30250697
BMC Bioinformatics. 2012 May 30;13:113
pubmed: 22646978
Front Microbiol. 2019 Jan 08;9:3243
pubmed: 30671045
Ecol Lett. 2016 Aug;19(8):937-47
pubmed: 27335203
Front Microbiol. 2014 May 20;5:219
pubmed: 24904535
Nature. 1998 Jun 4;393(6684):440-2
pubmed: 9623998
Bioinformatics. 2010 Mar 15;26(6):715-21
pubmed: 20130030
Mycorrhiza. 2009 Nov;20(1):1-11
pubmed: 19495811
Soil Biol Biochem. 2013 Dec;67(100):85-93
pubmed: 24302785
Front Microbiol. 2016 Feb 26;7:227
pubmed: 26955371
Proc Natl Acad Sci U S A. 2007 Dec 11;104(50):19891-6
pubmed: 18056808
Soil Biol Biochem. 2014 Aug;75(100):143-151
pubmed: 25089062
Extremophiles. 2020 Nov;24(6):821-829
pubmed: 32974723
Nature. 2005 Feb 24;433(7028):895-900
pubmed: 15729348
Global Biogeochem Cycles. 2015 May;29(5):567-582
pubmed: 26693204
Trends Microbiol. 2017 Mar;25(3):217-228
pubmed: 27916383
Nat Rev Microbiol. 2012 Jul 16;10(8):538-50
pubmed: 22796884
Science. 2015 Nov 6;350(6261):663-6
pubmed: 26542567
New Phytol. 2006;171(2):391-404
pubmed: 16866945
Commun Biol. 2019 Jun 21;2:233
pubmed: 31263777
ISME J. 2014 Apr;8(4):841-53
pubmed: 24335828
PLoS One. 2014 Apr 04;9(4):e94076
pubmed: 24705618
ISME J. 2020 Jun;14(6):1396-1409
pubmed: 32076127
Appl Environ Microbiol. 2019 Jun 17;85(13):
pubmed: 31003986
Ecol Lett. 2011 May;14(5):493-502
pubmed: 21395963
ISME J. 2017 Sep;11(9):1964-1974
pubmed: 28430188
PLoS Comput Biol. 2012;8(7):e1002606
pubmed: 22807668
Nat Ecol Evol. 2016 Dec 05;1(1):15
pubmed: 28812567
J Anim Ecol. 2009 Mar;78(2):346-53
pubmed: 19021779
Nature. 2017 May 31;546(7656):22-24
pubmed: 28569825
Proc Natl Acad Sci U S A. 2006 Jun 6;103(23):8577-82
pubmed: 16723398
Microb Ecol. 2018 Jul;76(1):156-168
pubmed: 29204781
Front Microbiol. 2019 Mar 21;10:557
pubmed: 30949152
Nature. 2007 Nov 8;450(7167):277-80
pubmed: 17994095
PLoS One. 2016 Nov 18;11(11):e0165987
pubmed: 27861486
Environ Microbiol. 2018 Jun;20(6):2207-2217
pubmed: 29708645
BMC Syst Biol. 2007 Nov 21;1:54
pubmed: 18031580
PLoS One. 2015 Jun 12;10(6):e0130051
pubmed: 26067836
New Phytol. 2015 Mar;205(4):1587-1597
pubmed: 25483568
Nat Commun. 2019 Oct 24;10(1):4841
pubmed: 31649246
Mol Ecol. 2014 Jul;23(13):3258-72
pubmed: 24689939
Appl Environ Microbiol. 2000 Oct;66(10):4356-60
pubmed: 11010882
Mol Ecol. 2017 Dec;26(23):6608-6620
pubmed: 29087010
Nature. 1971 Sep 10;233(5315):133
pubmed: 16063238
Microbiome. 2020 Jan 17;8(1):3
pubmed: 31952472
mBio. 2010 Oct 05;1(4):
pubmed: 20941329
Water Res. 2016 Nov 1;104:1-10
pubmed: 27497626
ISME J. 2012 Feb;6(2):343-51
pubmed: 21900968
Bioinformatics. 2015 Nov 1;31(21):3476-82
pubmed: 26139637
mBio. 2011 Jul 26;2(4):
pubmed: 21791581
New Phytol. 2007;174(2):230-233
pubmed: 17388883
Nat Genet. 2015 Apr;47(4):410-5
pubmed: 25706625
FEMS Microbiol Ecol. 2012 Nov;82(2):303-15
pubmed: 22404643
FEMS Microbiol Ecol. 2021 Mar 8;97(3):
pubmed: 33452882
FEMS Microbiol Rev. 2005 Sep;29(4):795-811
pubmed: 16102603
ISME J. 2013 Oct;7(10):2010-22
pubmed: 23788332
Mol Ecol. 2001 Jul;10(7):1801-10
pubmed: 11472547
New Phytol. 2007;173(3):611-620
pubmed: 17244056
FEMS Microbiol Ecol. 2007 Feb;59(2):428-35
pubmed: 17313585
Mol Ecol. 2013 Nov;22(21):5271-7
pubmed: 24112409
ISME J. 2019 May;13(5):1330-1344
pubmed: 30692628
Nat Rev Microbiol. 2018 Sep;16(9):567-576
pubmed: 29789680
Microb Ecol. 2008 Jul;56(1):76-89
pubmed: 17943340
FEMS Microbiol Ecol. 2014 Dec;90(3):708-17
pubmed: 25229424
Appl Microbiol Biotechnol. 2018 Apr;102(8):3805-3818
pubmed: 29532103
J Exp Bot. 2005 Jul;56(417):1761-78
pubmed: 15911555
Ecol Lett. 2016 Aug;19(8):926-36
pubmed: 27264635
Nature. 2006 Oct 19;443(7113):818-22
pubmed: 17051209

Auteurs

Milan Varsadiya (M)

Department of Ecosystems Biology, University of South Bohemia, 37005 České Budějovice, Czech Republic.

Tim Urich (T)

Institute of Microbiology, University of Greifswald, 17487 Greifswald, Germany.

Gustaf Hugelius (G)

Department of Physical Geography, Stockholm University, 10691 Stockholm, Sweden.
Bolin Centre for Climate Research, Stockholm University, 10691 Stockholm, Sweden.

Jiří Bárta (J)

Department of Ecosystems Biology, University of South Bohemia, 37005 České Budějovice, Czech Republic.
Centre for Polar Ecology, Faculty of Science, University of South Bohemia, 37005 České Budějovice, Czech Republic.

Classifications MeSH