Sample Preparation and Diagnostic Methods for a Variety of Settings: A Comprehensive Review.


Journal

Molecules (Basel, Switzerland)
ISSN: 1420-3049
Titre abrégé: Molecules
Pays: Switzerland
ID NLM: 100964009

Informations de publication

Date de publication:
18 Sep 2021
Historique:
received: 14 08 2021
revised: 14 09 2021
accepted: 14 09 2021
entrez: 28 9 2021
pubmed: 29 9 2021
medline: 2 10 2021
Statut: epublish

Résumé

Sample preparation is an essential step for nearly every type of biochemical analysis in use today. Among the most important of these analyses is the diagnosis of diseases, since their treatment may rely greatly on time and, in the case of infectious diseases, containing their spread within a population to prevent outbreaks. To address this, many different methods have been developed for use in the wide variety of settings for which they are needed. In this work, we have reviewed the literature and report on a broad range of methods that have been developed in recent years and their applications to point-of-care (POC), high-throughput screening, and low-resource and traditional clinical settings for diagnosis, including some of those that were developed in response to the coronavirus disease 2019 (COVID-19) pandemic. In addition to covering alternative approaches and improvements to traditional sample preparation techniques such as extractions and separations, techniques that have been developed with focuses on integration with smart devices, laboratory automation, and biosensors are also discussed.

Identifiants

pubmed: 34577137
pii: molecules26185666
doi: 10.3390/molecules26185666
pmc: PMC8470389
pii:
doi:

Types de publication

Journal Article Review

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : HHS/NIH/National Institute of General Medical Sciences (NIGMS) through the Chemistry/Biology Interface Program at the University of Maryland Baltimore County
ID : 5T32GM066706

Références

Virulence. 2015;6(6):558-65
pubmed: 26068569
Am J Clin Pathol. 2006 Oct;126(4):513-20
pubmed: 16938656
Clin Microbiol Rev. 2014 Oct;27(4):783-822
pubmed: 25278575
Tohoku J Exp Med. 2016;238(4):287-93
pubmed: 27020774
Biotechnol Adv. 2016 May-Jun;34(3):161-76
pubmed: 26837054
ACS Sens. 2017 Aug 25;2(8):1247-1254
pubmed: 28809488
Lab Chip. 2020 Nov 7;20(21):4031-4042
pubmed: 32996969
Proc Natl Acad Sci U S A. 2011 Jul 19;108(29):11784-9
pubmed: 21715661
Plasmonics. 2014;9:781-799
pubmed: 27330521
Nat Biotechnol. 2019 Apr;37(4):389-406
pubmed: 30804534
Medicina (Kaunas). 2018 Mar 13;54(1):
pubmed: 30344234
Biosens Bioelectron. 2020 Dec 15;170:112682
pubmed: 33035898
Chem Rev. 2014 Jun 11;114(11):5728-52
pubmed: 24745365
Viruses. 2020 Feb 14;12(2):
pubmed: 32074965
Biotechnol Adv. 2016 May-Jun;34(3):291-304
pubmed: 26952640
Nano Lett. 2020 Jun 10;20(6):4330-4336
pubmed: 32375003
Trends Biotechnol. 2011 May;29(5):240-50
pubmed: 21377748
Expert Rev Anti Infect Ther. 2013 Aug;11(8):805-15
pubmed: 23977936
Anal Bioanal Chem. 2009 Jun;394(3):743-58
pubmed: 19377840
Anal Chem. 2007 Sep 15;79(18):7042-52
pubmed: 17696497
Chem Rev. 2015 Oct 14;115(19):10690-724
pubmed: 26258867
Talanta. 2020 Feb 1;208:120304
pubmed: 31816721
Molecules. 2020 Jun 28;25(13):
pubmed: 32605281
Biosens Bioelectron. 2020 Dec 15;170:112649
pubmed: 33022516
J Clin Microbiol. 2013 Jul;51(7):2018-24
pubmed: 23486706
Diagn Microbiol Infect Dis. 2015 Jan;81(1):57-9
pubmed: 25456043
Anal Chem. 2014 Jun 3;86(11):5470-7
pubmed: 24797144
Analyst. 2015 Nov 21;140(22):7776-83
pubmed: 26460197
Biotechnol Adv. 2016 May-Jun;34(3):139-60
pubmed: 26808189
J Biomol Tech. 2008 Dec;19(5):285-95
pubmed: 19183792
Mol Cell Proteomics. 2015 Oct;14(10):2814-23
pubmed: 26223766
Comp Biochem Physiol A Mol Integr Physiol. 2016 Dec;202:99-111
pubmed: 27083239
Clin Biochem. 2017 Jul;50(10-11):555-561
pubmed: 28284827
Eur J Clin Microbiol Infect Dis. 2019 Jun;38(6):1059-1070
pubmed: 30834996
Talanta. 2016 Jan 1;146:714-26
pubmed: 26695321
Annu Rev Biomed Eng. 2017 Jun 21;19:221-248
pubmed: 28301734
Biotechnol Adv. 2020 Jul - Aug;41:107537
pubmed: 32199980
Nat Biomed Eng. 2018 Sep;2(9):657-665
pubmed: 30906647
Clin Biochem. 2017 Jul;50(10-11):605-611
pubmed: 28390779
Biosens Bioelectron. 2020 Nov 15;168:112513
pubmed: 32889395
PLoS One. 2019 Sep 30;14(9):e0223008
pubmed: 31568482
Proteomics. 2013 Oct;13(20):2980-3
pubmed: 23943524
Talanta. 2020 Aug 1;215:120895
pubmed: 32312440
Biotechnol Adv. 2016 May-Jun;34(3):321-30
pubmed: 26631766
Biotechniques. 2020 Oct;69(4):317-325
pubmed: 32815744
J Microbiol Methods. 2017 Dec;143:1-5
pubmed: 28935157
Biosens Bioelectron. 2020 Oct 15;166:112471
pubmed: 32777726
Pharmacotherapy. 2012 Aug;32(8):677-87
pubmed: 23307517
Chem Rev. 2017 Jun 28;117(12):8447-8480
pubmed: 28627178
Oral Dis. 2011 Nov;17(8):745-52
pubmed: 21521419
Drug Test Anal. 2016 Jan;8(1):30-8
pubmed: 26607771
Comput Struct Biotechnol J. 2014 Nov 15;13:8-17
pubmed: 25750696
Lab Chip. 2013 Jun 21;13(12):2210-51
pubmed: 23652632
Clin Chem. 2012 Dec;58(12):1636-43
pubmed: 22730450
Analyst. 2019 Dec 2;144(24):7105-7129
pubmed: 31663527
Mil Med. 2017 Jul;182(7):e1938-e1940
pubmed: 28810994
Analyst. 2010 Sep;135(9):2408-14
pubmed: 20617276
J Chromatogr B Analyt Technol Biomed Life Sci. 2017 Aug 15;1060:424-442
pubmed: 28683395
Anal Chim Acta. 2019 Jul 31;1063:159-166
pubmed: 30967180
Dev Eng. 2017;2:99-106
pubmed: 29276756
J Chromatogr A. 2008 Mar 14;1184(1-2):191-219
pubmed: 17991475
Front Microbiol. 2020 Jan 14;10:2903
pubmed: 31993022
Comb Chem High Throughput Screen. 2007 Jul;10(6):399-412
pubmed: 17896936
J Lab Autom. 2015 Aug;20(4):365-89
pubmed: 25878051
IEEE Access. 2021;9:37823-37833
pubmed: 33996342
Eur J Clin Microbiol Infect Dis. 2011 Sep;30(9):1053-61
pubmed: 21311936
Sci Transl Med. 2013 Apr 24;5(182):182ra54
pubmed: 23616121
ACS Appl Mater Interfaces. 2014 Nov 26;6(22):19525-30
pubmed: 25318086
Anal Chem. 2008 Jun 1;80(11):4125-32
pubmed: 18459738
Anal Methods. 2013 Jul 7;5(13):3177-3184
pubmed: 23914255
J Chromatogr A. 2012 Jan 20;1221:84-98
pubmed: 22137129
J Chromatogr A. 2010 Apr 16;1217(16):2390-414
pubmed: 20038465
J Fluoresc. 2007 May;17(3):279-87
pubmed: 17404821
Biosens Bioelectron. 2016 Jan 15;75:273-84
pubmed: 26319170
Mil Med. 2021 Jan 25;186(Suppl 1):716-721
pubmed: 33499548
Int J Mol Sci. 2021 Jan 05;22(1):
pubmed: 33466437
Biosens Bioelectron. 2020 Sep 15;164:112326
pubmed: 32553352
Clin Chim Acta. 2020 Aug;507:104-116
pubmed: 32305536
ACS Nano. 2019 Dec 24;13(12):13866-13874
pubmed: 31756079
Chem Rev. 2016 Mar 9;116(5):2826-85
pubmed: 26799741
Anal Chim Acta. 2018 Feb 25;1001:1-17
pubmed: 29291790
Biotechnol Adv. 2019 Dec;37(8):107440
pubmed: 31476421
Clin Chim Acta. 2018 Jul;482:21-26
pubmed: 29580858
Lab Chip. 2016 May 24;16(11):1957-61
pubmed: 27149012
Biosens Bioelectron. 2019 Sep 15;141:111448
pubmed: 31252258
Biosens Bioelectron. 2018 Jul 1;110:78-88
pubmed: 29602034
PLoS One. 2019 Jul 23;14(7):e0220102
pubmed: 31335892
Crit Rev Clin Lab Sci. 2011 Sep-Dec;48(5-6):217-49
pubmed: 22185616
Anal Chem. 2010 Jan 1;82(1):3-10
pubmed: 20000334
ACS Sens. 2017 Jan 27;2(1):16-30
pubmed: 28722437
PLoS One. 2018 Jul 25;13(7):e0201070
pubmed: 30044836
ACS Nano. 2014 Apr 22;8(4):3992-4003
pubmed: 24588742
J Clin Virol. 2014 Oct;61(2):265-9
pubmed: 25132398
Clin Chim Acta. 2014 May 15;432:44-8
pubmed: 24012653
Clin Microbiol Infect. 2020 Apr;26(4):421-424
pubmed: 31610301
Sensors (Basel). 2019 Sep 28;19(19):
pubmed: 31569330
Expert Rev Mol Diagn. 2012 Mar;12(2):189-206
pubmed: 22369378
Clin Biochem. 2017 Aug;50(12):645-647
pubmed: 28363751
Cell. 2018 Feb 22;172(5):1122-1131.e9
pubmed: 29474911
Adv Infect Dis. 2018 Sep;8(3):121-138
pubmed: 30197838
Analyst. 2014 Jun 7;139(11):2627-40
pubmed: 24733714
J Appl Microbiol. 2016 Feb;120(2):379-87
pubmed: 26606545
Genome. 2021 Apr;64(4):416-425
pubmed: 33091314
Clin Infect Dis. 2013 Dec;57 Suppl 3:S139-70
pubmed: 24200831
Trends Biotechnol. 2020 Jun;38(6):637-649
pubmed: 31918858
Nature. 2016 Jan 28;529(7587):509-514
pubmed: 26819044
Anal Biochem. 2016 Oct 1;510:33-40
pubmed: 27325503
Sci Rep. 2017 Aug 31;7(1):10216
pubmed: 28860471
Eur J Clin Microbiol Infect Dis. 2013 Jun;32(6):723-8
pubmed: 23339016
Genome Med. 2016 Jul 01;8(1):73
pubmed: 27368373
Lab Chip. 2020 Sep 21;20(18):3386-3398
pubmed: 32766666
Br Med Bull. 2014 Dec;112(1):27-35
pubmed: 25274572
IEEE J Transl Eng Health Med. 2016 Aug 16;4:2800614
pubmed: 27730014
Annu Rev Biomed Eng. 2015;17:267-86
pubmed: 26290952
Anal Chim Acta. 2019 Dec 20;1090:23-30
pubmed: 31655642
J Electroanal Chem (Lausanne). 2021 Feb 1;882:114989
pubmed: 33456428
N Engl J Med. 2012 Feb 2;366(5):454-61
pubmed: 22296079
Int J Mol Sci. 2018 Sep 12;19(9):
pubmed: 30213089
Methods Mol Biol. 2012;864:89-115
pubmed: 22367895
Eur J Clin Microbiol Infect Dis. 2017 Oct;36(10):1717-1731
pubmed: 28573472
Microorganisms. 2020 Oct 06;8(10):
pubmed: 33036303
Crit Rev Clin Lab Sci. 2021 Mar;58(2):77-100
pubmed: 32609551
J Mol Diagn. 2016 Sep;18(5):605-619
pubmed: 27542512
PLoS One. 2019 Dec 2;14(12):e0225475
pubmed: 31790434
Crit Rev Clin Lab Sci. 2016 Aug;53(4):268-76
pubmed: 26857116
Anal Chem. 2020 Jan 7;92(1):183-202
pubmed: 31671262
Wiley Interdiscip Rev Nanomed Nanobiotechnol. 2015 Mar-Apr;7(2):152-68
pubmed: 25377594
Talanta. 2015 May;136:114-27
pubmed: 25702993

Auteurs

Zach E Nichols (ZE)

Department of Chemistry and Biochemistry, University of Maryland, Baltimore County, 1000 Hilltop Drive, Baltimore, MD 21250, USA.
Institute of Fluorescence, University of Maryland, Baltimore County, 701 E Pratt Street, Baltimore, MD 21270, USA.

Chris D Geddes (CD)

Department of Chemistry and Biochemistry, University of Maryland, Baltimore County, 1000 Hilltop Drive, Baltimore, MD 21250, USA.
Institute of Fluorescence, University of Maryland, Baltimore County, 701 E Pratt Street, Baltimore, MD 21270, USA.

Articles similaires

[Redispensing of expensive oral anticancer medicines: a practical application].

Lisanne N van Merendonk, Kübra Akgöl, Bastiaan Nuijen
1.00
Humans Antineoplastic Agents Administration, Oral Drug Costs Counterfeit Drugs

Smoking Cessation and Incident Cardiovascular Disease.

Jun Hwan Cho, Seung Yong Shin, Hoseob Kim et al.
1.00
Humans Male Smoking Cessation Cardiovascular Diseases Female
Humans United States Aged Cross-Sectional Studies Medicare Part C
1.00
Humans Yoga Low Back Pain Female Male

Classifications MeSH