Web-based and machine learning approaches for identification of patient-reported outcomes in inflammatory bowel disease.

Inflammatory bowel disease Machine learning Patient-reported outcomes World wide web-based approach

Journal

Digestive and liver disease : official journal of the Italian Society of Gastroenterology and the Italian Association for the Study of the Liver
ISSN: 1878-3562
Titre abrégé: Dig Liver Dis
Pays: Netherlands
ID NLM: 100958385

Informations de publication

Date de publication:
Apr 2022
Historique:
received: 14 05 2021
revised: 03 08 2021
accepted: 08 09 2021
pubmed: 1 10 2021
medline: 6 5 2022
entrez: 30 9 2021
Statut: ppublish

Résumé

Messages from an Internet forum are raw material that emerges in a natural setting (i.e., non-induced by a research situation). The FLARE-IBD project aimed at using an innovative approach consisting of collecting messages posted by patients in an Internet forum and conducting a machine-learning study (data analysis/language processing) for developing a patient-reported outcome measuring flare in inflammatory bowel disease meeting international requirements. We used web-based and machine learning approaches, in the following steps. 1) Web-scraping to collect all available posts in an Internet forum (23 656 messages) and extracting metadata from the forum. 2) Twenty patients were randomly assigned 50 extracted messages; participants indicated whether the message corresponded or not to the flare phenomenon (labeling). If yes, participants were asked to identify excerpts from the text they considered significant flare markers (annotation). 3) The set of annotated messages underwent a vocabulary analysis. The phenomenon of flare was circumscribed with the identification of 20 surrogate flare markers classified into five dimensions with their frequency within extracted labeled data: impact on life, symptoms, extra-intestinal manifestations, drugs and environmental factors. Web-based and machine-learning approaches met international recommendations to inform the content and structure for the development of patient-reported outcomes.

Sections du résumé

BACKGROUND BACKGROUND
Messages from an Internet forum are raw material that emerges in a natural setting (i.e., non-induced by a research situation).
AIMS OBJECTIVE
The FLARE-IBD project aimed at using an innovative approach consisting of collecting messages posted by patients in an Internet forum and conducting a machine-learning study (data analysis/language processing) for developing a patient-reported outcome measuring flare in inflammatory bowel disease meeting international requirements.
METHODS METHODS
We used web-based and machine learning approaches, in the following steps. 1) Web-scraping to collect all available posts in an Internet forum (23 656 messages) and extracting metadata from the forum. 2) Twenty patients were randomly assigned 50 extracted messages; participants indicated whether the message corresponded or not to the flare phenomenon (labeling). If yes, participants were asked to identify excerpts from the text they considered significant flare markers (annotation). 3) The set of annotated messages underwent a vocabulary analysis.
RESULTS RESULTS
The phenomenon of flare was circumscribed with the identification of 20 surrogate flare markers classified into five dimensions with their frequency within extracted labeled data: impact on life, symptoms, extra-intestinal manifestations, drugs and environmental factors. Web-based and machine-learning approaches met international recommendations to inform the content and structure for the development of patient-reported outcomes.

Identifiants

pubmed: 34588153
pii: S1590-8658(21)00774-X
doi: 10.1016/j.dld.2021.09.005
pii:
doi:

Types de publication

Journal Article Randomized Controlled Trial

Langues

eng

Sous-ensembles de citation

IM

Pagination

483-489

Informations de copyright

Copyright © 2021. Published by Elsevier Ltd.

Déclaration de conflit d'intérêts

Declaration of Competing Interest None declared

Auteurs

Laetitia Ricci (L)

CHRU-Nancy, INSERM, Université de Lorraine, CIC 1433 Clinical Epidemiology, F-54000 Nancy, France. Electronic address: l.ricci@chru-nancy.fr.

Yannick Toussaint (Y)

Laboratoire lorrain de recherche en informatique et ses applications, Université de Lorraine, Nancy, France. Electronic address: yannick.toussaint@loria.fr.

Justine Becker (J)

Ecole des mines de Nancy, Université de Lorraine, Nancy, France. Electronic address: justine.becker5@etu.univ-lorraine.fr.

Hiba Najjar (H)

Ecole des mines de Nancy, Université de Lorraine, Nancy, France. Electronic address: hiba.najjar@etu.mines-nancy.univ-lorraine.fr.

Alix Renier (A)

Ecole des mines de Nancy, Université de Lorraine, Nancy, France. Electronic address: alix.renier@etu.mines-nancy.univ-lorraine.fr.

Myriam Choukour (M)

INSERM, U1256 NGERE and gastroenterology Department, CHRU-Nancy, Université de Lorraine, Nancy, France. Electronic address: m.choukour@chru-nancy.fr.

Anne Buisson (A)

afa Crohn RCH, France.

Corinne Devos (C)

afa Crohn RCH, France.

Jonathan Epstein (J)

CHRU-Nancy, INSERM, Université de Lorraine, CIC 1433 Clinical Epidemiology, F-54000 Nancy, France; Université de Lorraine, APEMAC, F-54000 Nancy, France. Electronic address: j.epstein@chru-nancy.fr.

Laurent Peyrin Biroulet (L)

INSERM, U1256 NGERE and gastroenterology Department, CHRU-Nancy, Université de Lorraine, Nancy, France.

Francis Guillemin (F)

CHRU-Nancy, INSERM, Université de Lorraine, CIC 1433 Clinical Epidemiology, F-54000 Nancy, France; Université de Lorraine, APEMAC, F-54000 Nancy, France. Electronic address: francis.guillemin@chru-nancy.fr.

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