Advances in mRNA 5-methylcytosine modifications: Detection, effectors, biological functions, and clinical relevance.

5-methylcytosine RNA epigenetics disease mRNA post-transcriptional modification prediction

Journal

Molecular therapy. Nucleic acids
ISSN: 2162-2531
Titre abrégé: Mol Ther Nucleic Acids
Pays: United States
ID NLM: 101581621

Informations de publication

Date de publication:
03 Dec 2021
Historique:
entrez: 11 10 2021
pubmed: 12 10 2021
medline: 12 10 2021
Statut: epublish

Résumé

5-methylcytosine (m

Identifiants

pubmed: 34631286
doi: 10.1016/j.omtn.2021.08.020
pii: S2162-2531(21)00214-6
pmc: PMC8479277
doi:

Types de publication

Journal Article Review

Langues

eng

Pagination

575-593

Informations de copyright

© 2021 The Author(s).

Déclaration de conflit d'intérêts

The authors declare no competing interests.

Références

Biokhimiia. 1978 Oct;43(10):1883-92
pubmed: 719057
Nucleic Acids Res. 2019 Sep 19;47(16):8720-8733
pubmed: 31276587
RNA Biol. 2017 Sep 2;14(9):1260-1268
pubmed: 28488916
Curr Cancer Drug Targets. 2021;21(4):326-352
pubmed: 33504307
Nat Cell Biol. 2019 Aug;21(8):978-990
pubmed: 31358969
mBio. 2019 Jun 11;10(3):
pubmed: 31186331
Anal Chem. 2015 Aug 4;87(15):7653-9
pubmed: 26158405
J Am Chem Soc. 2016 Nov 2;138(43):14178-14181
pubmed: 27766835
Mol Ther Nucleic Acids. 2017 Jun 16;7:155-163
pubmed: 28624191
FEBS J. 2011 Dec;278(24):4782-96
pubmed: 22040320
Curr Biol. 2006 May 23;16(10):971-81
pubmed: 16713953
Nucleic Acids Res. 2012 Jun;40(11):5023-33
pubmed: 22344696
Mol Cancer. 2021 Jan 18;20(1):18
pubmed: 33461542
Nat Struct Mol Biol. 2012 Sep;19(9):900-5
pubmed: 22885326
Biochem Biophys Res Commun. 1983 Aug 12;114(3):1161-8
pubmed: 6615511
Nat Rev Drug Discov. 2019 Nov;18(12):892-894
pubmed: 31780844
J Biotechnol. 2017 Nov 10;261:105-115
pubmed: 28822795
Nat Methods. 2018 Mar;15(3):201-206
pubmed: 29334379
Mol Cell Biol. 2015 Dec;35(23):4043-52
pubmed: 26391950
Nat Struct Mol Biol. 2019 May;26(5):380-388
pubmed: 31061524
J Cell Biochem. 2017 Sep;118(9):2587-2598
pubmed: 28247949
Trends Plant Sci. 2020 Oct;25(10):954-958
pubmed: 32736923
Mol Cell. 2019 Sep 19;75(6):1188-1202.e11
pubmed: 31399345
Genome Biol. 2013 Nov 29;14(11):215
pubmed: 24286375
Nat Biotechnol. 2013 May;31(5):458-64
pubmed: 23604283
Mol Syst Biol. 2020 Nov;16(11):e10025
pubmed: 33251765
Oncotarget. 2017 Mar 28;8(13):20751-20765
pubmed: 27447970
EMBO J. 2014 Sep 17;33(18):2020-39
pubmed: 25063673
Ann Rheum Dis. 2013 Apr;72 Suppl 2:ii116-23
pubmed: 23253932
Brief Bioinform. 2020 May 21;21(3):982-995
pubmed: 31157855
Mol Cell. 2019 May 16;74(4):640-650
pubmed: 31100245
Nucleic Acids Res. 1993 May 25;21(10):2479-86
pubmed: 8506141
Nucleic Acids Res. 2017 Jul 27;45(13):8014-8025
pubmed: 28549193
RNA Biol. 2010 Mar-Apr;7(2):237-47
pubmed: 20224293
Mol Plant. 2017 Nov 6;10(11):1387-1399
pubmed: 28965832
Genome Biol. 2017 Jan 5;18(1):1
pubmed: 28077169
Proc Natl Acad Sci U S A. 2000 Jul 18;97(15):8263-5
pubmed: 10899996
Chem Commun (Camb). 2019 Feb 19;55(16):2328-2331
pubmed: 30723849
Nat Chem Biol. 2010 Dec;6(12):863-5
pubmed: 21079590
Curr Opin Cell Biol. 2014 Dec;31:1-7
pubmed: 25014650
Science. 2011 Sep 2;333(6047):1303-7
pubmed: 21817016
Bioinformatics. 2020 Jun 1;36(11):3336-3342
pubmed: 32134472
Methods Mol Biol. 2017;1562:3-18
pubmed: 28349450
Cell Rep. 2013 Jul 25;4(2):255-61
pubmed: 23871666
Nucleic Acids Res. 2016 Jan 29;44(2):852-62
pubmed: 26578598
EMBO J. 2016 Oct 4;35(19):2104-2119
pubmed: 27497299
Elife. 2017 Oct 06;6:
pubmed: 28984244
Methods Mol Biol. 2017;1562:91-106
pubmed: 28349456
Sci Rep. 2018 Nov 23;8(1):17299
pubmed: 30470762
Wiley Interdiscip Rev RNA. 2019 Jan;10(1):e1510
pubmed: 30311405
RNA. 2011 Feb;17(2):251-62
pubmed: 21159796
Proc Natl Acad Sci U S A. 1992 Mar 1;89(5):1827-31
pubmed: 1542678
Aging (Albany NY). 2015 Dec;7(12):1143-58
pubmed: 26687548
Elife. 2016 Jul 02;5:
pubmed: 27371828
Genome Res. 2017 Sep;27(9):1589-1596
pubmed: 28684555
Biotechniques. 2001 Mar;30(3):574-80, 582
pubmed: 11252793
Nat Commun. 2020 Jun 5;11(1):2834
pubmed: 32503981
Cell Death Dis. 2020 Apr 24;11(4):270
pubmed: 32332707
J Biol Chem. 1960 May;235:1488-98
pubmed: 13811056
Nucleic Acids Res. 1979 Aug 10;6(11):3459-69
pubmed: 386274
Methods Mol Biol. 2019;1933:389-394
pubmed: 30945199
EMBO J. 2015 Sep 14;34(18):2350-62
pubmed: 26271101
Biochem J. 2017 Jun 6;474(12):2009-2026
pubmed: 28476776
Nucleic Acids Res. 2021 Jan 25;49(2):1006-1022
pubmed: 33330931
Plant Sci. 2001 Jan 5;160(2):315-321
pubmed: 11164603
Nat Protoc. 2014 Feb;9(2):337-61
pubmed: 24434802
Dev Cell. 2020 May 4;53(3):272-286.e7
pubmed: 32275888
Nucleic Acids Res. 2017 Jul 7;45(12):7401-7415
pubmed: 28472312
PLoS One. 2014 Apr 08;9(4):e93248
pubmed: 24714572
Oncotarget. 2017 Jun 20;8(25):41178-41188
pubmed: 28476023
J Transl Med. 2020 Jun 22;18(1):245
pubmed: 32571340
Methods. 2014 Oct 1;69(3):274-81
pubmed: 24979058
Front Immunol. 2021 Mar 10;12:641507
pubmed: 33777035
RNA. 2020 Oct;26(10):1489-1506
pubmed: 32636310
Mol Cancer Ther. 2020 Mar;19(3):882-894
pubmed: 31879363
Infect Dis Clin North Am. 2016 Jun;30(2):523-537
pubmed: 27208771
Mol Cell. 2016 Feb 18;61(4):507-519
pubmed: 26876937
Biochemistry. 1993 Sep 28;32(38):10249-53
pubmed: 8399153
Mol Cancer. 2020 Apr 17;19(1):78
pubmed: 32303268
Proc Natl Acad Sci U S A. 1974 Oct;71(10):3971-5
pubmed: 4372599
J Genet Genomics. 2014 Jan 20;41(1):21-33
pubmed: 24480744
J Hematol Oncol. 2020 Mar 18;13(1):22
pubmed: 32188475
Nucleic Acids Res. 2018 Jan 4;46(D1):D303-D307
pubmed: 29106616
J Am Soc Mass Spectrom. 2005 Dec;16(12):1985-99
pubmed: 16271296
Biochem Biophys Res Commun. 2017 Nov 4;493(1):94-99
pubmed: 28919411
Cancer Invest. 2018 Apr 21;36(4):246-253
pubmed: 29775108
Development. 2018 Oct 2;145(19):
pubmed: 30135188
RNA. 2010 Aug;16(8):1584-96
pubmed: 20558545
Angew Chem Int Ed Engl. 2012 Nov 5;51(45):11289-92
pubmed: 23042528
Int J Mol Sci. 2020 Oct 31;21(21):
pubmed: 33142933
Curr Biol. 2019 Aug 5;29(15):2465-2476.e5
pubmed: 31327714
Front Plant Sci. 2018 Apr 18;9:519
pubmed: 29720995
Recent Results Cancer Res. 1983;84:202-11
pubmed: 6189159
Mol Ther Nucleic Acids. 2020 Sep 4;21:332-342
pubmed: 32645685
J Nanobiotechnology. 2013 Apr 03;11:8
pubmed: 23552456
Cell Res. 2014 Feb;24(2):177-89
pubmed: 24407421
Biochemistry. 2002 Sep 17;41(37):11218-25
pubmed: 12220187
Nat Commun. 2012 Jul 03;3:937
pubmed: 22760636
Nature. 2016 Jun 15;534(7607):335-40
pubmed: 27306184
Nat Commun. 2013;4:1798
pubmed: 23653210
Mol Ther Nucleic Acids. 2019 Dec 6;18:739-747
pubmed: 31726390
J Vis Exp. 2020 Jul 10;(161):
pubmed: 32716367
Genomics Proteomics Bioinformatics. 2016 Oct;14(5):265-279
pubmed: 27646134
J Am Chem Soc. 2018 Jun 13;140(23):7135-7143
pubmed: 29782154
EMBO Rep. 2017 Nov;18(11):2004-2014
pubmed: 29051200
RNA. 1997 Nov;3(11):1233-47
pubmed: 9409616
Cancer Lett. 2021 Jan 28;497:89-99
pubmed: 33038492
Front Plant Sci. 2016 Sep 22;7:1439
pubmed: 27713760
Nat Chem Biol. 2014 Feb;10(2):93-5
pubmed: 24316715
Genes Dev. 2010 Aug 1;24(15):1590-5
pubmed: 20679393
Cell Host Microbe. 2016 Nov 9;20(5):666-673
pubmed: 27773536
Methods Mol Biol. 2019;1870:1-21
pubmed: 30539543
Nucleic Acids Res. 2019 Nov 18;47(20):e125
pubmed: 31504795
Nat Cell Biol. 2019 May;21(5):552-559
pubmed: 31048770
Biochimie. 1995;77(1-2):142-4
pubmed: 7599271
Science. 1992 Feb 28;255(5048):1125-7
pubmed: 1347662
Genome Biol. 2012 Oct 31;13(10):175
pubmed: 23113984
Cell Discov. 2018 Feb 27;4:10
pubmed: 29507755
Proc Natl Acad Sci U S A. 2020 Feb 18;117(7):3603-3609
pubmed: 32015133
Pharmacol Ther. 2019 Mar;195:85-99
pubmed: 30347210
PLoS One. 2015 Nov 25;10(11):e0143756
pubmed: 26606401
J Vis Exp. 2020 May 14;(159):
pubmed: 32478728
Nucleic Acids Res. 1976 Sep;3(9):2233-41
pubmed: 787934
Methods Mol Biol. 2017;1562:79-87
pubmed: 28349455
J Theor Biol. 2018 Sep 7;452:1-9
pubmed: 29727634
Science. 2018 Sep 28;361(6409):1346-1349
pubmed: 30262497
Nucleic Acids Res. 1996 Apr 15;24(8):1489-96
pubmed: 8628682
Acta Neuropathol. 2019 Dec;138(6):1053-1074
pubmed: 31428936
Plant Cell. 2017 Mar;29(3):445-460
pubmed: 28062751
Gigascience. 2020 Sep 1;9(9):
pubmed: 32893860
Cell Res. 2017 Mar;27(3):315-328
pubmed: 28106072
Nat Methods. 2008 Jul;5(7):621-8
pubmed: 18516045
Math Biosci Eng. 2019 Jul 4;16(6):6231-6241
pubmed: 31698559
Nucleic Acids Res. 2006;34(20):6034-43
pubmed: 17071714
Mol Cell. 2013 Jan 10;49(1):18-29
pubmed: 23177736
Circ Res. 2016 Mar 18;118(6):944-56
pubmed: 26838785
Nucleic Acids Res. 1999 Aug 1;27(15):3138-45
pubmed: 10454610
Proc Natl Acad Sci U S A. 2005 Dec 6;102(49):17551-8
pubmed: 16251272
Cancer Sci. 2019 Nov;110(11):3510-3519
pubmed: 31487418
Biochim Biophys Acta. 1982 Jun 30;697(3):330-5
pubmed: 7049245
Nat Rev Genet. 2017 May;18(5):275-291
pubmed: 28216634
Cell Stem Cell. 2010 Nov 5;7(5):618-30
pubmed: 20888316
Genome Biol. 2017 Oct 23;18(1):197
pubmed: 29061143
Trends Biochem Sci. 2006 Mar;31(3):173-81
pubmed: 16483781
Curr Genomics. 2020 Jan;21(1):3-10
pubmed: 32655293
Nucleic Acids Res. 2012 Dec;40(22):11450-62
pubmed: 23034806
Nucleic Acids Res. 1981 Sep 25;9(18):4557-62
pubmed: 7301582
Nature. 2016 May 25;534(7608):575-8
pubmed: 27281194
F1000Res. 2019 Apr 26;8:
pubmed: 31069058
Int J Mass Spectrom. 2011 Jul 1;304(2-3):98-104
pubmed: 21811394
Mol Cell Biol. 2013 Apr;33(8):1561-70
pubmed: 23401851
Cell Res. 2017 May;27(5):606-625
pubmed: 28418038
RNA Biol. 2014;11(12):1568-85
pubmed: 25616408
Anal Biochem. 1983 Feb 15;129(1):1-13
pubmed: 6190418
Am J Transl Res. 2020 Mar 15;12(3):912-922
pubmed: 32269723
Am J Hum Genet. 2012 May 4;90(5):847-55
pubmed: 22541559
Biochim Biophys Acta. 1978 Dec 21;521(2):576-83
pubmed: 737182
Nucleic Acids Res. 2018 Apr 20;46(7):e38
pubmed: 29346625
Science. 2006 Jan 20;311(5759):395-8
pubmed: 16424344
BMC Bioinformatics. 2020 Oct 30;21(1):489
pubmed: 33126851
Nat Commun. 2012 Mar 06;3:712
pubmed: 22395603
Front Pharmacol. 2019 Mar 27;10:303
pubmed: 30971929
Nature. 2000 Sep 21;407(6802):401-5
pubmed: 11014198
BMC Plant Biol. 2019 Oct 14;19(1):421
pubmed: 31610789
Nat Protoc. 2014 Apr;9(4):828-41
pubmed: 24625781
Nucleic Acids Res. 1993 Sep 25;21(19):4577-85
pubmed: 8233793
Trends Genet. 2018 Sep;34(9):666-681
pubmed: 29941292
Mol Cell. 2018 Mar 15;69(6):1028-1038.e6
pubmed: 29547716
J Biol Chem. 1982 Jan 25;257(2):674-7
pubmed: 6798031
Cell. 2017 Jun 15;169(7):1187-1200
pubmed: 28622506
Methods. 2016 Sep 1;107:48-56
pubmed: 27020891
RNA. 2017 Dec;23(12):1754-1769
pubmed: 28855326
Front Genet. 2019 Mar 21;10:253
pubmed: 30949200
Front Cell Dev Biol. 2020 Jun 05;8:430
pubmed: 32582707
Anal Biochem. 2018 Jun 1;550:41-48
pubmed: 29649472
Cell Discov. 2015 Jun 09;1:15010
pubmed: 27462411
Biochem Biophys Res Commun. 1975 Oct 27;66(4):1373-9
pubmed: 1191298
Mol Cancer. 2017 Feb 1;16(1):29
pubmed: 28148257
Methods Mol Biol. 2019;1870:219-235
pubmed: 30539559
Int J Mol Sci. 2017 Nov 10;18(11):
pubmed: 29125541
J Virol. 2020 Jun 16;94(13):
pubmed: 32321818
Nucleic Acids Res. 1976 Mar;3(3):749-65
pubmed: 1272797
Proc Natl Acad Sci U S A. 2019 Jan 15;116(3):976-981
pubmed: 30591559
Nature. 2014 Jan 2;505(7481):117-20
pubmed: 24284625
J Biol Chem. 1981 Sep 10;256(17):9059-62
pubmed: 6927846
Nature. 2018 Feb 1;554(7690):123-127
pubmed: 29364877
Nature. 2016 Sep 15;537(7620):369-373
pubmed: 27602518
Mol Cell Biol. 1986 Jul;6(7):2663-73
pubmed: 3537724
DNA Cell Biol. 2012 May;31(5):660-71
pubmed: 22136356
Biochem Biophys Res Commun. 2019 Nov 26;520(1):60-66
pubmed: 31570165
Oncotarget. 2016 Apr 12;7(15):19099-110
pubmed: 26992231
RNA Biol. 2016 Sep;13(9):756-9
pubmed: 27351695
BMC Biol. 2020 Apr 15;18(1):40
pubmed: 32293435
Cell Host Microbe. 2019 Aug 14;26(2):217-227.e6
pubmed: 31415754

Auteurs

Gangqiang Guo (G)

Wenzhou Collaborative Innovation Center of Gastrointestinal Cancer in Basic Research and Precision Medicine, Wenzhou Key Laboratory of Cancer-related Pathogens and Immunity, Department of Microbiology and Immunology, Institute of Molecular Virology and Immunology, Institute of Tropical Medicine, School of Basic Medical Sciences, Wenzhou Medical University, Wenzhou, China.

Kan Pan (K)

First Clinical College, Wenzhou Medical University, Wenzhou, China.

Su Fang (S)

Wenzhou Collaborative Innovation Center of Gastrointestinal Cancer in Basic Research and Precision Medicine, Wenzhou Key Laboratory of Cancer-related Pathogens and Immunity, Department of Microbiology and Immunology, Institute of Molecular Virology and Immunology, Institute of Tropical Medicine, School of Basic Medical Sciences, Wenzhou Medical University, Wenzhou, China.

Lele Ye (L)

Department of Gynecologic Oncology, Women's Hospital, School of Medicine, Zhejiang University, Hangzhou, China.

Xinya Tong (X)

Wenzhou Collaborative Innovation Center of Gastrointestinal Cancer in Basic Research and Precision Medicine, Wenzhou Key Laboratory of Cancer-related Pathogens and Immunity, Department of Microbiology and Immunology, Institute of Molecular Virology and Immunology, Institute of Tropical Medicine, School of Basic Medical Sciences, Wenzhou Medical University, Wenzhou, China.

Zhibin Wang (Z)

Wenzhou Collaborative Innovation Center of Gastrointestinal Cancer in Basic Research and Precision Medicine, Wenzhou Key Laboratory of Cancer-related Pathogens and Immunity, Department of Microbiology and Immunology, Institute of Molecular Virology and Immunology, Institute of Tropical Medicine, School of Basic Medical Sciences, Wenzhou Medical University, Wenzhou, China.

Xiangyang Xue (X)

Wenzhou Collaborative Innovation Center of Gastrointestinal Cancer in Basic Research and Precision Medicine, Wenzhou Key Laboratory of Cancer-related Pathogens and Immunity, Department of Microbiology and Immunology, Institute of Molecular Virology and Immunology, Institute of Tropical Medicine, School of Basic Medical Sciences, Wenzhou Medical University, Wenzhou, China.

Huidi Zhang (H)

Department of Nephrology, The First Affiliated Hospital, Wenzhou Medical University, Wenzhou, China.

Classifications MeSH