Developmental graphs comparison strategy for analysis of pattern formation and phylogeny.
Bioinformatics
Developmental graphs (trees)
Embryogenesis of angiosperms
Inception of morphological characters
Phylogeny
Trees distance algorithm
Journal
Journal of theoretical biology
ISSN: 1095-8541
Titre abrégé: J Theor Biol
Pays: England
ID NLM: 0376342
Informations de publication
Date de publication:
07 01 2022
07 01 2022
Historique:
received:
12
05
2021
revised:
27
09
2021
accepted:
04
10
2021
pubmed:
16
10
2021
medline:
15
12
2021
entrez:
15
10
2021
Statut:
ppublish
Résumé
In most taxa of plant and animal kingdoms the initial steps of embryogenesis and the final morphology of an organism are strongly determined. However, these two phenomena do not correlate from phylogenetic point of view, namely, different unrelated taxa can have the same type of early embryogenesis, while there can be different types of cleavage inside one taxon. Here we discuss an approach enabling giving an insight into the understanding of this phenomenon. First, we propose a strategy for constructing developmental graphs (trees) that provide mathematical formalization of a process of embryogenesis. Second, we suggested an algorithm of trees comparison, developed specifically for this type of labeled graphs, which allows calculating a distance between two developmental trees, and thus clustering them into groups. Next we performed the analysis of correspondence between the obtained clusters and the inception of morphological characters in given clustered groups of organisms, which allows describing several particular cases of interrelation between developmental trends and formation of morphological structures. Here we present some illustrations of the suggested methodology on the analysis of plant angiosperm species belonging to different taxa of various ranks.
Identifiants
pubmed: 34653506
pii: S0022-5193(21)00344-1
doi: 10.1016/j.jtbi.2021.110925
pii:
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
110925Informations de copyright
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