A novel self-learning framework for bladder cancer grading using histopathological images.

Bladder cancer Deep clustering Histopathological images Immunohistochemical staining Self-learning Tumour budding Unsupervised learning

Journal

Computers in biology and medicine
ISSN: 1879-0534
Titre abrégé: Comput Biol Med
Pays: United States
ID NLM: 1250250

Informations de publication

Date de publication:
11 2021
Historique:
received: 15 06 2021
revised: 07 10 2021
accepted: 07 10 2021
pubmed: 22 10 2021
medline: 5 11 2021
entrez: 21 10 2021
Statut: ppublish

Résumé

In recent times, bladder cancer has increased significantly in terms of incidence and mortality. Currently, two subtypes are known based on tumour growth: non-muscle invasive (NMIBC) and muscle-invasive bladder cancer (MIBC). In this work, we focus on the MIBC subtype because it has the worst prognosis and can spread to adjacent organs. We present a self-learning framework to grade bladder cancer from histological images stained by immunohistochemical techniques. Specifically, we propose a novel Deep Convolutional Embedded Attention Clustering (DCEAC) which allows for the classification of histological patches into different levels of disease severity, according to established patterns in the literature. The proposed DCEAC model follows a fully unsupervised two-step learning methodology to discern between non-tumour, mild and infiltrative patterns from high-resolution 512 × 512 pixel samples. Our system outperforms previous clustering-based methods by including a convolutional attention module, which enables the refinement of the features of the latent space prior to the classification stage. The proposed network surpasses state-of-the-art approaches by 2-3% across different metrics, reaching a final average accuracy of 0.9034 in a multi-class scenario. Furthermore, the reported class activation maps evidence that our model is able to learn by itself the same patterns that clinicians consider relevant, without requiring previous annotation steps. This represents a breakthrough in MIBC grading that bridges the gap with respect to training the model on labelled data.

Identifiants

pubmed: 34673472
pii: S0010-4825(21)00726-5
doi: 10.1016/j.compbiomed.2021.104932
pii:
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

104932

Informations de copyright

Copyright © 2021. Published by Elsevier Ltd.

Auteurs

Gabriel García (G)

Instituto de Investigación e Innovación en Bioingeniería, Universitat Politècnica de València, 46022, Valencia, Spain. Electronic address: jogarpa7@i3b.upv.es.

Anna Esteve (A)

Instituto de Investigación e Innovación en Bioingeniería, Universitat Politècnica de València, 46022, Valencia, Spain; Hospital Universitario y Politécnico La Fe, Avinguda de Fernando Abril Martorell, 106, 46026, Valencia, Spain.

Adrián Colomer (A)

Instituto de Investigación e Innovación en Bioingeniería, Universitat Politècnica de València, 46022, Valencia, Spain.

David Ramos (D)

Hospital Universitario y Politécnico La Fe, Avinguda de Fernando Abril Martorell, 106, 46026, Valencia, Spain.

Valery Naranjo (V)

Instituto de Investigación e Innovación en Bioingeniería, Universitat Politècnica de València, 46022, Valencia, Spain.

Articles similaires

[Redispensing of expensive oral anticancer medicines: a practical application].

Lisanne N van Merendonk, Kübra Akgöl, Bastiaan Nuijen
1.00
Humans Antineoplastic Agents Administration, Oral Drug Costs Counterfeit Drugs

Smoking Cessation and Incident Cardiovascular Disease.

Jun Hwan Cho, Seung Yong Shin, Hoseob Kim et al.
1.00
Humans Male Smoking Cessation Cardiovascular Diseases Female
Humans United States Aged Cross-Sectional Studies Medicare Part C
1.00
Humans Yoga Low Back Pain Female Male

Classifications MeSH