Knowledge transfer to enhance the performance of deep learning models for automated classification of B cell neoplasms.
FCS data merge
classification
decision-support
deep learning
flow cytometry
lymphoma
neoplasm
open source
transfer learning
Journal
Patterns (New York, N.Y.)
ISSN: 2666-3899
Titre abrégé: Patterns (N Y)
Pays: United States
ID NLM: 101767765
Informations de publication
Date de publication:
08 Oct 2021
08 Oct 2021
Historique:
received:
12
04
2021
revised:
10
05
2021
accepted:
25
08
2021
entrez:
25
10
2021
pubmed:
26
10
2021
medline:
26
10
2021
Statut:
epublish
Résumé
Multi-parameter flow cytometry (MFC) is a cornerstone in clinical decision making for leukemia and lymphoma. MFC data analysis requires manual gating of cell populations, which is time-consuming, subjective, and often limited to a two-dimensional space. In recent years, deep learning models have been successfully used to analyze data in high-dimensional space and are highly accurate. However, AI models used for disease classification with MFC data are limited to the panel they were trained on. Thus, a key challenge in deploying AI into routine diagnostics is the robustness and adaptability of such models. This study demonstrates how transfer learning can be applied to boost the performance of models with smaller datasets acquired with different MFC panels. We trained models for four additional datasets by transferring the features learned from our base model. Our workflow increased the model's overall performance and, more prominently, improved the learning rate for small training sizes.
Identifiants
pubmed: 34693376
doi: 10.1016/j.patter.2021.100351
pii: S2666-3899(21)00206-3
pmc: PMC8515009
doi:
Types de publication
Journal Article
Langues
eng
Pagination
100351Informations de copyright
© 2021 The Authors.
Déclaration de conflit d'intérêts
H.L. is a founder and employee of res mechanica; F.E. is an employee of res mechanica; W.K. is a founder and employee of MLL; T.H. is a founder and employee of MLL.
Références
Bioinformatics. 2015 May 15;31(10):1623-31
pubmed: 25600947
Cytometry A. 2008 Sep;73(9):834-46
pubmed: 18629843
Nat Biotechnol. 2012 Jul 10;30(7):639-47
pubmed: 22781693
Leukemia. 2010 Nov;24(11):1927-33
pubmed: 20844562
J Biomed Inform. 2011 Aug;44(4):663-76
pubmed: 21406248
Leukemia. 2012 Sep;26(9):1908-75
pubmed: 22552007
Bioinformatics. 2019 Oct 15;35(20):4063-4071
pubmed: 30874801
Am J Clin Pathol. 2021 Mar 15;155(4):597-605
pubmed: 33210119
Blood. 2008 Apr 15;111(8):3941-67
pubmed: 18198345
Br J Haematol. 2021 Jan;192(2):239-250
pubmed: 32602593
Blood. 2016 May 19;127(20):2375-90
pubmed: 26980727
Curr Hematol Malig Rep. 2020 Jun;15(3):203-210
pubmed: 32239350
Cytometry A. 2020 Oct;97(10):1073-1080
pubmed: 32519455
PLoS Comput Biol. 2013;9(12):e1003365
pubmed: 24363631
Cytometry. 1991;12(1):82-90
pubmed: 1999125
Cytometry. 1990;11(3):321-2
pubmed: 2340768