Breast mass segmentation in ultrasound with selective kernel U-Net convolutional neural network.

Attention mechanism Breast mass segmentation Convolutional neural networks Deep learning Receptive field Ultrasound imaging

Journal

Biomedical signal processing and control
ISSN: 1746-8094
Titre abrégé: Biomed Signal Process Control
Pays: England
ID NLM: 101317299

Informations de publication

Date de publication:
Aug 2020
Historique:
entrez: 27 10 2021
pubmed: 1 8 2020
medline: 1 8 2020
Statut: ppublish

Résumé

In this work, we propose a deep learning method for breast mass segmentation in ultrasound (US). Variations in breast mass size and image characteristics make the automatic segmentation difficult. To address this issue, we developed a selective kernel (SK) U-Net convolutional neural network. The aim of the SKs was to adjust network's receptive fields via an attention mechanism, and fuse feature maps extracted with dilated and conventional convolutions. The proposed method was developed and evaluated using US images collected from 882 breast masses. Moreover, we used three datasets of US images collected at different medical centers for testing (893 US images). On our test set of 150 US images, the SK-U-Net achieved mean Dice score of 0.826, and outperformed regular U-Net, Dice score of 0.778. When evaluated on three separate datasets, the proposed method yielded mean Dice scores ranging from 0.646 to 0.780. Additional fine-tuning of our better-performing model with data collected at different centers improved mean Dice scores by ~6%. SK-U-Net utilized both dilated and regular convolutions to process US images. We found strong correlation, Spearman's rank coefficient of 0.7, between the utilization of dilated convolutions and breast mass size in the case of network's expansion path. Our study shows the usefulness of deep learning methods for breast mass segmentation. SK-U-Net implementation and pre-trained weights can be found at github.com/mbyr/bus_seg.

Identifiants

pubmed: 34703489
doi: 10.1016/j.bspc.2020.102027
pmc: PMC8545275
mid: NIHMS1729934
pii:
doi:

Types de publication

Journal Article

Langues

eng

Subventions

Organisme : NCI NIH HHS
ID : P30 CA008748
Pays : United States
Organisme : NCI NIH HHS
ID : R44 CA112858
Pays : United States

Déclaration de conflit d'intérêts

Conflict of interest The authors do not have any conflicts of interest.

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Auteurs

Michal Byra (M)

Department of Ultrasound, Institute of Fundamental Technological Research, Polish Academy of Sciences, Warsaw, Poland.
Department of Radiology, University of California, San Diego, USA.

Piotr Jarosik (P)

Department of Information and Computational Science, Institute of Fundamental Technological Research, Polish Academy of Sciences, Warsaw, Poland.

Aleksandra Szubert (A)

Maria Sklodowska-Curie Memorial Cancer Centre and Institute of Oncology, Warsaw, Poland.

Michael Galperin (M)

Almen Laboratories, Vista, USA.

Haydee Ojeda-Fournier (H)

Department of Radiology, University of California, San Diego, USA.

Linda Olson (L)

Department of Radiology, University of California, San Diego, USA.

Mary O'Boyle (M)

Department of Radiology, University of California, San Diego, USA.

Christopher Comstock (C)

Memorial Sloan-Kettering Cancer Center, New York, USA.

Michael Andre (M)

Department of Radiology, University of California, San Diego, USA.

Classifications MeSH