Grafting vigour is associated with DNA de-methylation in eggplant.


Journal

Horticulture research
ISSN: 2662-6810
Titre abrégé: Hortic Res
Pays: England
ID NLM: 101655540

Informations de publication

Date de publication:
01 Nov 2021
Historique:
received: 01 02 2021
accepted: 30 07 2021
revised: 20 07 2021
entrez: 1 11 2021
pubmed: 2 11 2021
medline: 2 11 2021
Statut: epublish

Résumé

In horticulture, grafting is a popular technique used to combine positive traits from two different plants. This is achieved by joining the plant top part (scion) onto a rootstock which contains the stem and roots. Rootstocks can provide resistance to stress and increase plant production, but despite their wide use, the biological mechanisms driving rootstock-induced alterations of the scion phenotype remain largely unknown. Given that epigenetics plays a relevant role during distance signalling in plants, we studied the genome-wide DNA methylation changes induced in eggplant (Solanum melongena) scion using two interspecific rootstocks to increase vigour. We found that vigour was associated with a change in scion gene expression and a genome-wide hypomethylation in the CHH context. Interestingly, this hypomethylation correlated with the downregulation of younger and potentially more active long terminal repeat retrotransposable elements (LTR-TEs), suggesting that graft-induced epigenetic modifications are associated with both physiological and molecular phenotypes in grafted plants. Our results indicate that the enhanced vigour induced by heterografting in eggplant is associated with epigenetic modifications, as also observed in some heterotic hybrids.

Identifiants

pubmed: 34719687
doi: 10.1038/s41438-021-00660-6
pii: 10.1038/s41438-021-00660-6
pmc: PMC8558322
doi:

Types de publication

Journal Article

Langues

eng

Pagination

241

Informations de copyright

© 2021. Crown.

Références

Bioinformatics. 2015 Jan 15;31(2):166-9
pubmed: 25260700
Genome Biol Evol. 2018 Oct 1;10(10):2596-2613
pubmed: 30239695
EMBO J. 2017 Mar 1;36(5):617-628
pubmed: 28069706
Nucleic Acids Res. 2018 Nov 2;46(19):e114
pubmed: 29986099
Nat Plants. 2015 Jul 06;1:15092
pubmed: 27250257
Genome Biol. 2010;11(10):R106
pubmed: 20979621
PLoS One. 2012;7(1):e30377
pubmed: 22276185
Nat Biotechnol. 2013 Feb;31(2):154-9
pubmed: 23354102
Nat Commun. 2020 Oct 22;11(1):5343
pubmed: 33093443
PLoS One. 2019 Oct 9;14(10):e0223581
pubmed: 31596886
BMC Plant Biol. 2016 Feb 17;16:45
pubmed: 26882898
PLoS Comput Biol. 2013;9(8):e1003118
pubmed: 23950696
Science. 2010 May 14;328(5980):872-5
pubmed: 20413459
Nat Rev Mol Cell Biol. 2018 Aug;19(8):489-506
pubmed: 29784956
Plant Physiol. 2018 Feb;176(2):1627-1645
pubmed: 29196538
Bioinformatics. 2014 Aug 1;30(15):2114-20
pubmed: 24695404
Front Plant Sci. 2014 Dec 17;5:727
pubmed: 25566298
Mitochondrial DNA B Resour. 2016 Nov 12;1(1):843-844
pubmed: 33473650
PLoS One. 2013 Apr 16;8(4):e61995
pubmed: 23614002
Cell. 2012 Sep 28;151(1):167-80
pubmed: 23021223
Nat Genet. 2003 May;34(1):65-9
pubmed: 12669067
Nat Commun. 2020 Mar 6;11(1):1221
pubmed: 32144266
J Exp Bot. 2011 Aug;62(13):4561-70
pubmed: 21652532
Bioinformatics. 2009 May 1;25(9):1105-11
pubmed: 19289445
Bioinformatics. 2020 Apr 15;36(8):2628-2629
pubmed: 31882993
EMBO J. 2011 Aug 31;30(17):3553-63
pubmed: 21878996
J Exp Bot. 2019 Feb 5;70(3):747-755
pubmed: 30481315
Proc Natl Acad Sci U S A. 2012 Feb 28;109(9):3570-5
pubmed: 22331882
Sci Rep. 2019 Aug 13;9(1):11769
pubmed: 31409808
Proc Natl Acad Sci U S A. 2011 Feb 8;108(6):2617-22
pubmed: 21266545
Bioinformatics. 2011 Jun 1;27(11):1571-2
pubmed: 21493656
Nat Plants. 2015 Mar 23;1(4):15025
pubmed: 27247031
J Exp Bot. 2013 Nov;64(16):4829-37
pubmed: 24014873
Trends Plant Sci. 2016 May;21(5):418-437
pubmed: 26698413
Proc Natl Acad Sci U S A. 2016 Feb 9;113(6):E801-10
pubmed: 26787884
Genome Biol. 2020 Aug 6;21(1):194
pubmed: 32762764
Proc Natl Acad Sci U S A. 2017 Jul 25;114(30):8101-8106
pubmed: 28696287
Front Plant Sci. 2017 Jun 30;8:1130
pubmed: 28713405

Auteurs

Elisa Cerruti (E)

Department of Agricultural, Forest and Food Sciences, Plant Genetics and Breeding, University of Torino, Grugliasco, Italy.
The Sainsbury Laboratory, University of Cambridge, Cambridge, UK.

Carmina Gisbert (C)

Institute for Conservation & Improvement of Valencian Agrodiversity (COMAV), Universitat Politècnica de València, Valencia, Spain.

Hajk-Georg Drost (HG)

The Sainsbury Laboratory, University of Cambridge, Cambridge, UK.
Computational Biology Group, Department of Molecular Biology, Max Planck Institute for Developmental Biology, Tübingen, Germany.

Danila Valentino (D)

Department of Agricultural, Forest and Food Sciences, Plant Genetics and Breeding, University of Torino, Grugliasco, Italy.

Ezio Portis (E)

Department of Agricultural, Forest and Food Sciences, Plant Genetics and Breeding, University of Torino, Grugliasco, Italy.

Lorenzo Barchi (L)

Department of Agricultural, Forest and Food Sciences, Plant Genetics and Breeding, University of Torino, Grugliasco, Italy.

Jaime Prohens (J)

Institute for Conservation & Improvement of Valencian Agrodiversity (COMAV), Universitat Politècnica de València, Valencia, Spain.

Sergio Lanteri (S)

Department of Agricultural, Forest and Food Sciences, Plant Genetics and Breeding, University of Torino, Grugliasco, Italy.

Cinzia Comino (C)

Department of Agricultural, Forest and Food Sciences, Plant Genetics and Breeding, University of Torino, Grugliasco, Italy. cinzia.comino@unito.it.

Marco Catoni (M)

The Sainsbury Laboratory, University of Cambridge, Cambridge, UK. m.catoni@bham.ac.uk.
School of Biosciences, University of Birmingham, Birmingham, United Kingdom. m.catoni@bham.ac.uk.
Institute for Sustainable Plant Protection, National Research Council of Italy, Torino, Italy. m.catoni@bham.ac.uk.

Classifications MeSH