Fitbeat: COVID-19 estimation based on wristband heart rate using a contrastive convolutional auto-encoder.

Anomaly detection COVID-19 Contrastive learning Convolutional auto-encoder Respiratory tract infection

Journal

Pattern recognition
ISSN: 0031-3203
Titre abrégé: Pattern Recognit
Pays: England
ID NLM: 0250655

Informations de publication

Date de publication:
Mar 2022
Historique:
received: 05 04 2021
revised: 30 08 2021
accepted: 24 10 2021
pubmed: 2 11 2021
medline: 2 11 2021
entrez: 1 11 2021
Statut: ppublish

Résumé

This study proposes a contrastive convolutional auto-encoder (contrastive CAE), a combined architecture of an auto-encoder and contrastive loss, to identify individuals with suspected COVID-19 infection using heart-rate data from participants with multiple sclerosis (MS) in the ongoing RADAR-CNS mHealth research project. Heart-rate data was remotely collected using a Fitbit wristband. COVID-19 infection was either confirmed through a positive swab test, or inferred through a self-reported set of recognised symptoms of the virus. The contrastive CAE outperforms a conventional convolutional neural network (CNN), a long short-term memory (LSTM) model, and a convolutional auto-encoder without contrastive loss (CAE). On a test set of 19 participants with MS with reported symptoms of COVID-19, each one paired with a participant with MS with no COVID-19 symptoms, the contrastive CAE achieves an unweighted average recall of

Identifiants

pubmed: 34720200
doi: 10.1016/j.patcog.2021.108403
pii: S0031-3203(21)00579-3
pmc: PMC8547790
doi:

Types de publication

Journal Article

Langues

eng

Pagination

108403

Subventions

Organisme : Alzheimer's Society
ID : 171
Pays : United Kingdom
Organisme : Medical Research Council
ID : MC_PC_17214
Pays : United Kingdom

Informations de copyright

© 2021 Elsevier Ltd. All rights reserved.

Déclaration de conflit d'intérêts

The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

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Auteurs

Shuo Liu (S)

EIHW - Chair of Embedded Intelligence for Health Care and Wellbeing, University of Augsburg, Augsburg, Germany.

Jing Han (J)

EIHW - Chair of Embedded Intelligence for Health Care and Wellbeing, University of Augsburg, Augsburg, Germany.
Department of Computer Science and Technology, University of Cambridge, Cambridge, United Kingdom.

Estela Laporta Puyal (EL)

BSICoS Group, Aragón Institute of Engineering Research (I3A), IIS Aragón, University of Zaragoza, Zaragoza, Spain.
CIBER of Bioengineering, Biomaterials and Nanomedicine (CIBER-BNN), Madrid, Spain.

Spyridon Kontaxis (S)

BSICoS Group, Aragón Institute of Engineering Research (I3A), IIS Aragón, University of Zaragoza, Zaragoza, Spain.
CIBER of Bioengineering, Biomaterials and Nanomedicine (CIBER-BNN), Madrid, Spain.

Shaoxiong Sun (S)

The Department of Biostatistics and Health informatics, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, UK.

Patrick Locatelli (P)

Department of Engineering and Applied Science, University of Bergamo, Bergamo, Italy.

Judith Dineley (J)

EIHW - Chair of Embedded Intelligence for Health Care and Wellbeing, University of Augsburg, Augsburg, Germany.

Florian B Pokorny (FB)

EIHW - Chair of Embedded Intelligence for Health Care and Wellbeing, University of Augsburg, Augsburg, Germany.
Division of Phoniatrics, Medical University of Graz, Graz, Austria.

Gloria Dalla Costa (GD)

Università Vita Salute San Raffaele and Experimental Neurophysiology Unit, Institute of Experimental Neurology, Scientific Institute Hospital San Raffaele, Milan, Italy.

Letizia Leocani (L)

Università Vita Salute San Raffaele and Experimental Neurophysiology Unit, Institute of Experimental Neurology, Scientific Institute Hospital San Raffaele, Milan, Italy.

Ana Isabel Guerrero (AI)

Multiple Sclerosis Centre of Catalonia (Cemcat), Department of NeurologyNeuroimmunology, Hospital Universitari Vall dH́ebron, Universitat Autónoma de Barcelona, Barcelona, Spain.

Carlos Nos (C)

Multiple Sclerosis Centre of Catalonia (Cemcat), Department of NeurologyNeuroimmunology, Hospital Universitari Vall dH́ebron, Universitat Autónoma de Barcelona, Barcelona, Spain.

Ana Zabalza (A)

Multiple Sclerosis Centre of Catalonia (Cemcat), Department of NeurologyNeuroimmunology, Hospital Universitari Vall dH́ebron, Universitat Autónoma de Barcelona, Barcelona, Spain.

Per Soelberg Sørensen (PS)

Danish Multiple Sclerosis Centre, Department of Neurology, Copenhagen University Hospital Rigshospitalet, Copenhagen, Denmark.

Mathias Buron (M)

Danish Multiple Sclerosis Centre, Department of Neurology, Copenhagen University Hospital Rigshospitalet, Copenhagen, Denmark.

Melinda Magyari (M)

Danish Multiple Sclerosis Centre, Department of Neurology, Copenhagen University Hospital Rigshospitalet, Copenhagen, Denmark.

Yatharth Ranjan (Y)

The Department of Biostatistics and Health informatics, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, UK.

Zulqarnain Rashid (Z)

The Department of Biostatistics and Health informatics, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, UK.

Pauline Conde (P)

The Department of Biostatistics and Health informatics, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, UK.

Callum Stewart (C)

The Department of Biostatistics and Health informatics, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, UK.

Amos A Folarin (AA)

The Department of Biostatistics and Health informatics, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, UK.
Institute of Health Informatics, University College London, London, United Kingdom.

Richard Jb Dobson (RJ)

The Department of Biostatistics and Health informatics, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, UK.
Institute of Health Informatics, University College London, London, United Kingdom.

Raquel Bailón (R)

BSICoS Group, Aragón Institute of Engineering Research (I3A), IIS Aragón, University of Zaragoza, Zaragoza, Spain.
CIBER of Bioengineering, Biomaterials and Nanomedicine (CIBER-BNN), Madrid, Spain.

Srinivasan Vairavan (S)

Janssen Research and Development LLC, Titusville, NJ, USA.

Nicholas Cummins (N)

EIHW - Chair of Embedded Intelligence for Health Care and Wellbeing, University of Augsburg, Augsburg, Germany.
The Department of Biostatistics and Health informatics, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, UK.

Vaibhav A Narayan (VA)

Janssen Research and Development LLC, Titusville, NJ, USA.

Matthew Hotopf (M)

The Department of Psychological Medicine, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, United Kingdom.
South London and Maudsley National Health Service Foundation Trust, London, United Kingdom.

Giancarlo Comi (G)

Università Vita Salute San Raffaele, Casa di Cura Privata del Policlinico, Milan, Italy.

Björn Schuller (B)

EIHW - Chair of Embedded Intelligence for Health Care and Wellbeing, University of Augsburg, Augsburg, Germany.
GLAM - Group on Language, Audio, & Music, Imperial College London, London, United Kingdom.

Radar-Cns Consortium (RC)

The RADAR-CNS Consortium, London, United Kingdom.

Classifications MeSH