A WDR35-dependent coat protein complex transports ciliary membrane cargo vesicles to cilia.

CLEM COPI IFT TEM cell biology chlamydomonas reinhardtii cilia ciliary pocket coatomer correlative light and electron microscopy intraflagellar transport membrane cargos mouse transmission electron microscopy vesicular traffic

Journal

eLife
ISSN: 2050-084X
Titre abrégé: Elife
Pays: England
ID NLM: 101579614

Informations de publication

Date de publication:
04 11 2021
Historique:
received: 26 04 2021
accepted: 04 11 2021
pubmed: 5 11 2021
medline: 27 1 2022
entrez: 4 11 2021
Statut: epublish

Résumé

Intraflagellar transport (IFT) is a highly conserved mechanism for motor-driven transport of cargo within cilia, but how this cargo is selectively transported to cilia is unclear. WDR35/IFT121 is a component of the IFT-A complex best known for its role in ciliary retrograde transport. In the absence of WDR35, small mutant cilia form but fail to enrich in diverse classes of ciliary membrane proteins. In Most human cells have at least one small hair-like structure on their surface called a cilium. These structures can act as antennae and allow the cell to sense signals from the rest of the body. To do this, they contain proteins that differ from the rest of the cell. The content of cilia depends on regulated delivery of these proteins in and out of cilia by a process called the intraflagellar transport or IFT, which involves a large complex made of several proteins. This complex shuttles the cargo proteins back and forth between the base and the tip of the cilia. However, ciliary proteins are not produced in the cilia; instead, they are made in a different part of the cell and then they are transported to the ciliary base. At the point where they enter the cilia, they were thought to bind to the assembling IFT ‘trains’ and be transported across the ciliary gate to the positions where they are needed in cilia. One of the components of the IFT machinery is a protein called WDR35, also known as IFT121. If the gene that codes for this protein is faulty or missing, it results in severe disorders in both humans and mice including a range of potentially lethal skeletal dysplasias. Interestingly, without WDR35, cells cannot build functional cilia. The absence of this protein not only disrupts IFT, stopping certain ciliary proteins and their associated membranes from entering cilia; it also causes a ‘traffic jam’ with a pile-up of transport intermediates from the place in cell where they are made to the cilia. It is unclear why a mutation in one of the components of the IFT would have this effect, raising the question of whether WDR35, or IFTs a whole, has another role in bringing the cargo proteins into the cilia. To understand this phenomenon, Quidwai et al. analysed the structure of WDR35 and other IFT proteins and found that they are very similar to a protein complex called COPI, which is involved in transporting membrane proteins around the cell. When certain proteins are newly made, they are stored in small lipid bubbles – called vesicles – that then selectively move to where the proteins are needed. COPI coats these vesicles, helping them get to where they need to go in a process called vesicular transport. Quidwai et al. found that WDR35 and other IFT proteins are able to bind to specific types of lipid molecules, suggesting that they might be assisting in a form of vesicle transport too. Indeed, when mouse cells grown in the lab were genetically engineered so they could not produce WDR35, coatless vesicles accumulated around the base of the cilia. Adding back WDR35 to these mutant cells rescued these defects in vesicle transport to cilia as well as allowed functional cilia to be formed. These results provide evidence that WDR35, likely with other IFT proteins, acts as a COPI-like complex to deliver proteins to growing cilia. Further research will investigate the composition of these vesicles that transport proteins to cilia, and help pinpoint where they originate. Quidwai et al.’s findings not only shed light on how different genetic mutations found in patients with cilia dysfunction affect different steps of transporting proteins to and within cilia. They also increase our understanding of the cellular roadmap by which cells shuttle building blocks around in order to assemble these important ‘antennae’.

Autres résumés

Type: plain-language-summary (eng)
Most human cells have at least one small hair-like structure on their surface called a cilium. These structures can act as antennae and allow the cell to sense signals from the rest of the body. To do this, they contain proteins that differ from the rest of the cell. The content of cilia depends on regulated delivery of these proteins in and out of cilia by a process called the intraflagellar transport or IFT, which involves a large complex made of several proteins. This complex shuttles the cargo proteins back and forth between the base and the tip of the cilia. However, ciliary proteins are not produced in the cilia; instead, they are made in a different part of the cell and then they are transported to the ciliary base. At the point where they enter the cilia, they were thought to bind to the assembling IFT ‘trains’ and be transported across the ciliary gate to the positions where they are needed in cilia. One of the components of the IFT machinery is a protein called WDR35, also known as IFT121. If the gene that codes for this protein is faulty or missing, it results in severe disorders in both humans and mice including a range of potentially lethal skeletal dysplasias. Interestingly, without WDR35, cells cannot build functional cilia. The absence of this protein not only disrupts IFT, stopping certain ciliary proteins and their associated membranes from entering cilia; it also causes a ‘traffic jam’ with a pile-up of transport intermediates from the place in cell where they are made to the cilia. It is unclear why a mutation in one of the components of the IFT would have this effect, raising the question of whether WDR35, or IFTs a whole, has another role in bringing the cargo proteins into the cilia. To understand this phenomenon, Quidwai et al. analysed the structure of WDR35 and other IFT proteins and found that they are very similar to a protein complex called COPI, which is involved in transporting membrane proteins around the cell. When certain proteins are newly made, they are stored in small lipid bubbles – called vesicles – that then selectively move to where the proteins are needed. COPI coats these vesicles, helping them get to where they need to go in a process called vesicular transport. Quidwai et al. found that WDR35 and other IFT proteins are able to bind to specific types of lipid molecules, suggesting that they might be assisting in a form of vesicle transport too. Indeed, when mouse cells grown in the lab were genetically engineered so they could not produce WDR35, coatless vesicles accumulated around the base of the cilia. Adding back WDR35 to these mutant cells rescued these defects in vesicle transport to cilia as well as allowed functional cilia to be formed. These results provide evidence that WDR35, likely with other IFT proteins, acts as a COPI-like complex to deliver proteins to growing cilia. Further research will investigate the composition of these vesicles that transport proteins to cilia, and help pinpoint where they originate. Quidwai et al.’s findings not only shed light on how different genetic mutations found in patients with cilia dysfunction affect different steps of transporting proteins to and within cilia. They also increase our understanding of the cellular roadmap by which cells shuttle building blocks around in order to assemble these important ‘antennae’.

Identifiants

pubmed: 34734804
doi: 10.7554/eLife.69786
pii: 69786
pmc: PMC8754431
doi:
pii:

Substances chimiques

Cytoskeletal Proteins 0
Intracellular Signaling Peptides and Proteins 0
WDR35 protein, mouse 0

Banques de données

Dryad
['10.5061/dryad.m37pvmd33']

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : Medical Research Council
ID : MC_UU_00007/14
Pays : United Kingdom
Organisme : Medical Research Council
ID : MC_UU_12018/26
Pays : United Kingdom

Informations de copyright

© 2021, Quidwai et al.

Déclaration de conflit d'intérêts

TQ, JW, EH, NP, WL, PK, JW, LM, MK, JM, EL, GP, PM No competing interests declared

Références

J Biol Chem. 2017 May 5;292(18):7462-7473
pubmed: 28298440
J Cell Biol. 1962 Nov;15:363-77
pubmed: 13978319
J Cell Biol. 1999 Nov 1;147(3):519-30
pubmed: 10545497
Elife. 2017 Jun 16;6:
pubmed: 28621666
J Cell Biol. 2011 Jun 13;193(6):963-72
pubmed: 21670211
PLoS Genet. 2014 Sep 18;10(9):e1004577
pubmed: 25232951
Genes Dev. 2010 Oct 1;24(19):2180-93
pubmed: 20889716
Eukaryot Cell. 2008 Aug;7(8):1256-67
pubmed: 18515754
Nat Struct Mol Biol. 2020 Dec;27(12):1115-1124
pubmed: 32989303
Dev Cell. 2014 Nov 10;31(3):265-278
pubmed: 25443296
Elife. 2015 Nov 09;4:
pubmed: 26551564
Curr Opin Struct Biol. 2016 Dec;41:98-108
pubmed: 27393972
Am J Hum Genet. 2011 Apr 8;88(4):508-15
pubmed: 21473986
J Cell Sci. 2019 Feb 11;132(3):
pubmed: 30659111
Cell. 2004 May 14;117(4):527-39
pubmed: 15137945
J Am Soc Nephrol. 2012 Apr;23(4):641-51
pubmed: 22282595
Biochemistry. 2004 Apr 13;43(14):4263-71
pubmed: 15065870
Elife. 2020 Jun 08;9:
pubmed: 32510327
J Cell Biol. 1992 Feb;116(3):737-44
pubmed: 1309818
PLoS One. 2012;7(2):e30729
pubmed: 22328921
Mol Biol Cell. 2011 Dec;22(23):4549-62
pubmed: 21998199
Methods Mol Biol. 2019;1851:251-261
pubmed: 30298401
J Anat. 1969 Sep;105(Pt 2):351-62
pubmed: 4308456
Bioinformatics. 2013 Jul 15;29(14):1840-1
pubmed: 23681123
Hum Mol Genet. 2018 Feb 1;27(3):516-528
pubmed: 29220510
Cell. 2010 Jun 25;141(7):1208-19
pubmed: 20603001
Cell Mol Life Sci. 2011 Sep;68(17):2951-60
pubmed: 21152952
Nat Genet. 2004 Sep;36(9):989-93
pubmed: 15314642
Cell Rep. 2016 Nov 1;17(6):1505-1517
pubmed: 27806291
Proc Natl Acad Sci U S A. 1993 Jun 15;90(12):5519-23
pubmed: 8516294
Proc Natl Acad Sci U S A. 2016 May 10;113(19):E2589-97
pubmed: 27118846
Mol Biol Cell. 2006 Nov;17(11):4801-11
pubmed: 16957054
Mol Biol Cell. 2017 Feb 1;28(3):429-439
pubmed: 27932497
Proc Natl Acad Sci U S A. 2013 Apr 23;110(17):6943-8
pubmed: 23569277
Cell. 2017 Jan 12;168(1-2):252-263.e14
pubmed: 28017328
Dev Cell. 2015 Mar 23;32(6):665-6
pubmed: 25805133
Cell. 2007 Jun 15;129(6):1201-13
pubmed: 17574030
J Cell Sci. 2015 Mar 15;128(6):1065-70
pubmed: 25774051
Elife. 2020 Jan 15;9:
pubmed: 31939736
EMBO J. 2009 Feb 4;28(3):183-92
pubmed: 19153612
Nat Commun. 2018 Nov 8;9(1):4684
pubmed: 30409972
J Biol Chem. 2012 Apr 6;287(15):11689-703
pubmed: 22170070
Elife. 2015 Feb 17;4:
pubmed: 25688564
J Cell Biol. 2018 Jan 2;217(1):413-427
pubmed: 29038301
Cell Rep. 2013 Jun 27;3(6):1806-14
pubmed: 23746451
Nat Rev Mol Cell Biol. 2002 Nov;3(11):813-25
pubmed: 12415299
Genes Dev. 2002 Nov 1;16(21):2743-8
pubmed: 12414725
Cell. 2010 Jul 9;142(1):123-32
pubmed: 20579721
J Biol Chem. 2017 Oct 27;292(43):17703-17717
pubmed: 28848045
Dev Cell. 2014 Nov 10;31(3):279-290
pubmed: 25446516
J Lipid Res. 2011 Nov;52(11):2012-20
pubmed: 21900174
Nat Commun. 2014 Dec 15;5:5813
pubmed: 25504142
J Cell Sci. 2009 Mar 15;122(Pt 6):859-66
pubmed: 19240119
Curr Biol. 2017 Jan 9;27(1):R17-R18
pubmed: 28073014
Cilia. 2017 Apr 10;6:7
pubmed: 28400947
Proc Natl Acad Sci U S A. 2011 Jan 25;108(4):1456-61
pubmed: 21209331
Biophys J. 2015 Oct 20;109(8):1619-29
pubmed: 26488653
PLoS Genet. 2014 Feb 20;10(2):e1004170
pubmed: 24586199
J Cell Sci. 2010 May 15;123(Pt 10):1785-95
pubmed: 20427320
Hum Mol Genet. 2015 Jul 15;24(14):4126-37
pubmed: 25908617
Am J Hum Genet. 2018 Oct 4;103(4):612-620
pubmed: 30269812
J Cell Biol. 2012 Jun 11;197(6):789-800
pubmed: 22689656
Mol Biol Cell. 2006 Sep;17(9):3781-92
pubmed: 16775004
Methods Enzymol. 2013;524:171-94
pubmed: 23498740
Nat Methods. 2012 Jun 28;9(7):676-82
pubmed: 22743772
Cell. 1999 Oct 15;99(2):189-98
pubmed: 10535737
Proc Natl Acad Sci U S A. 2013 Apr 9;110(15):5987-92
pubmed: 23530209
J Cell Biol. 2010 Jun 14;189(6):1039-51
pubmed: 20530210
Elife. 2018 Apr 16;7:
pubmed: 29658880
Proc Natl Acad Sci U S A. 2005 Aug 9;102(32):11325-30
pubmed: 16061793
Nat Genet. 2008 Apr;40(4):403-410
pubmed: 18327258
Biochem Biophys Res Commun. 2008 Aug 15;373(1):119-24
pubmed: 18554500
Neuron. 2011 Mar 10;69(5):856-75
pubmed: 21382547
Nat Cell Biol. 2009 Nov;11(11):1332-9
pubmed: 19855387
Development. 2006 Oct;133(19):3859-70
pubmed: 16943275
J Cell Biol. 2007 Oct 22;179(2):321-30
pubmed: 17954613
J Biol Chem. 2007 Jul 27;282(30):21746-57
pubmed: 17540765
Front Cell Dev Biol. 2019 Dec 10;7:291
pubmed: 31921835
Science. 2016 May 6;352(6286):721-4
pubmed: 27151870
Genetics. 2009 Nov;183(3):885-96
pubmed: 19720863
J Cell Biol. 2010 Mar 22;188(6):953-69
pubmed: 20231383
PLoS One. 2009;4(5):e5384
pubmed: 19412537
Cell. 1998 May 1;93(3):455-66
pubmed: 9590179
Small GTPases. 2018 Mar 4;9(1-2):76-94
pubmed: 29072526
Mol Biol Cell. 2001 Aug;12(8):2341-51
pubmed: 11514620
EMBO J. 2011 May 18;30(10):1907-18
pubmed: 21505417
Nat Commun. 2014 Nov 18;5:5482
pubmed: 25405894
Semin Cell Dev Biol. 2018 Nov;83:51-58
pubmed: 29559335
Cell. 2004 Jan 23;116(2):153-66
pubmed: 14744428
Curr Biol. 2008 Dec 23;18(24):1899-906
pubmed: 19097904
Nat Genet. 2016 Jun;48(6):648-56
pubmed: 27158779
Am J Hum Genet. 2008 Aug;83(2):170-9
pubmed: 18674751
Methods Enzymol. 2013;524:243-63
pubmed: 23498744
J Struct Biol. 2005 Oct;152(1):36-51
pubmed: 16182563
J Cell Biol. 2013 Apr 15;201(2):249-61
pubmed: 23589493
Differentiation. 2012 Feb;83(2):S12-22
pubmed: 22118932
J Cell Sci. 2008 Feb 15;121(Pt 4):428-36
pubmed: 18211962
J Cell Sci. 2017 Dec 1;130(23):3975-3987
pubmed: 29025970
EMBO J. 2016 Apr 1;35(7):773-90
pubmed: 26912722
Curr Opin Cell Biol. 2018 Apr;51:124-131
pubmed: 29579578
Cell. 2009 Jun 26;137(7):1308-19
pubmed: 19563761
Bioessays. 2006 Feb;28(2):191-8
pubmed: 16435301
PLoS Genet. 2008 Dec;4(12):e1000315
pubmed: 19112494
Trends Biochem Sci. 2016 Sep;41(9):784-797
pubmed: 27364476
Nat Methods. 2011 Dec 25;9(2):173-5
pubmed: 22198341
Nucleic Acids Res. 2018 Jul 2;46(W1):W296-W303
pubmed: 29788355
PLoS Genet. 2017 Feb 16;13(2):e1006627
pubmed: 28207750
J Cell Sci. 2014 Jan 15;127(Pt 2):422-31
pubmed: 24213529
Biology (Basel). 2014 Apr 16;3(2):320-32
pubmed: 24833512
J Cell Biol. 1998 May 18;141(4):979-92
pubmed: 9585416
Genes Dev. 2013 Jan 15;27(2):163-8
pubmed: 23348840
J Cell Sci. 1996 Jul;109 ( Pt 7):1891-8
pubmed: 8832411
J Cell Biol. 2009 Nov 2;187(3):365-74
pubmed: 19948480
J Cell Biol. 2012 Dec 24;199(7):1083-101
pubmed: 23253480
Mol Biol Cell. 1999 Mar;10(3):693-712
pubmed: 10069812
Nat Cell Biol. 2008 Oct;10(10):1146-53
pubmed: 18776900
J Cell Sci. 2010 May 1;123(Pt 9):1460-7
pubmed: 20375059
Proc Natl Acad Sci U S A. 1998 Mar 3;95(5):2279-83
pubmed: 9482876
Curr Biol. 2014 May 19;24(10):1114-20
pubmed: 24814148
Mol Biol Cell. 2007 May;18(5):1554-69
pubmed: 17314406
J Cell Biol. 2011 Feb 21;192(4):631-45
pubmed: 21321097
Dev Cell. 2012 May 15;22(5):940-51
pubmed: 22595669
J Biol Chem. 2021 Jan-Jun;296:100190
pubmed: 33334886
J Cell Biol. 2009 Oct 5;187(1):135-48
pubmed: 19805633
J Cell Biol. 2010 Apr 5;189(1):171-86
pubmed: 20368623
Nat Rev Mol Cell Biol. 2017 Sep;18(9):533-547
pubmed: 28698599
J Cell Biol. 1998 May 4;141(3):611-23
pubmed: 9566963
Structure. 2019 Sep 3;27(9):1384-1394.e4
pubmed: 31303482
Elife. 2020 Jan 17;9:
pubmed: 31951201
Nat Cell Biol. 2018 Nov;20(11):1250-1255
pubmed: 30323187
Prog Retin Eye Res. 2014 Jan;38:1-19
pubmed: 24135424
PLoS Genet. 2010 Nov 24;6(11):e1001199
pubmed: 21124868
J Cell Biol. 2009 Dec 28;187(7):1117-32
pubmed: 20038682
Mol Biol Cell. 2017 Mar 1;28(5):624-633
pubmed: 28077622
J Struct Biol. 1996 Jan-Feb;116(1):71-6
pubmed: 8742726
J Cell Biol. 2018 May 7;217(5):1847-1868
pubmed: 29483145
J Cell Biol. 2020 Dec 7;219(12):
pubmed: 33185668
J Cell Sci. 2010 Nov 15;123(Pt 22):3966-77
pubmed: 20980383
J Cell Biol. 1998 Dec 14;143(6):1591-601
pubmed: 9852153
Sci Rep. 2015 Jul 07;5:11855
pubmed: 26150102
Curr Biol. 2019 Oct 7;29(19):3323-3330.e8
pubmed: 31564489
Elife. 2015 Jul 16;4:
pubmed: 26182404
Curr Biol. 2018 Oct 22;28(20):3279-3287.e2
pubmed: 30293716
Mol Biol Cell. 2006 Dec;17(12):5053-62
pubmed: 17021254
Genetics. 2014 Jun;197(2):667-84
pubmed: 24646679
J Biol Chem. 2016 May 20;291(21):10962-75
pubmed: 26980730

Auteurs

Tooba Quidwai (T)

MRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, United Kingdom.

Jiaolong Wang (J)

Department of Molecular Biology and Genetics, Aarhus University, Aarhus, Denmark.

Emma A Hall (EA)

MRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, United Kingdom.

Narcis A Petriman (NA)

Department of Molecular Biology and Genetics, Aarhus University, Aarhus, Denmark.

Weihua Leng (W)

Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany.

Petra Kiesel (P)

Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany.

Jonathan N Wells (JN)

MRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, United Kingdom.

Laura C Murphy (LC)

MRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, United Kingdom.

Margaret A Keighren (MA)

MRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, United Kingdom.

Joseph A Marsh (JA)

MRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, United Kingdom.

Esben Lorentzen (E)

Department of Molecular Biology and Genetics, Aarhus University, Aarhus, Denmark.

Gaia Pigino (G)

Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany.
Human Technopole, Milan, Italy.

Pleasantine Mill (P)

MRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, United Kingdom.

Articles similaires

Robotic Surgical Procedures Animals Humans Telemedicine Models, Animal

Odour generalisation and detection dog training.

Lyn Caldicott, Thomas W Pike, Helen E Zulch et al.
1.00
Animals Odorants Dogs Generalization, Psychological Smell
Animals TOR Serine-Threonine Kinases Colorectal Neoplasms Colitis Mice
Animals Tail Swine Behavior, Animal Animal Husbandry

Classifications MeSH